Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00040

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00045 and HMPREF1058_RS00040 are separated by 40 nucleotidesHMPREF1058_RS00040 and HMPREF1058_RS00035 are separated by 18 nucleotides HMPREF1058_RS00045: HMPREF1058_RS00045 - SusC/RagA family TonB-linked outer membrane protein, at 81,240 to 84,089 _RS00045 HMPREF1058_RS00040: HMPREF1058_RS00040 - RagB/SusD family nutrient uptake outer membrane protein, at 84,130 to 86,106 _RS00040 HMPREF1058_RS00035: HMPREF1058_RS00035 - TonB-dependent receptor, at 86,125 to 89,307 _RS00035 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 83.155 kb on - strand, within HMPREF1058_RS00045at 83.227 kb on + strand, within HMPREF1058_RS00045at 83.228 kb on - strand, within HMPREF1058_RS00045at 83.241 kb on - strand, within HMPREF1058_RS00045at 83.258 kb on + strand, within HMPREF1058_RS00045at 83.258 kb on + strand, within HMPREF1058_RS00045at 83.258 kb on + strand, within HMPREF1058_RS00045at 83.261 kb on - strand, within HMPREF1058_RS00045at 83.285 kb on + strand, within HMPREF1058_RS00045at 83.286 kb on - strand, within HMPREF1058_RS00045at 83.309 kb on - strand, within HMPREF1058_RS00045at 83.345 kb on + strand, within HMPREF1058_RS00045at 83.345 kb on + strand, within HMPREF1058_RS00045at 83.348 kb on + strand, within HMPREF1058_RS00045at 83.349 kb on - strand, within HMPREF1058_RS00045at 83.350 kb on + strandat 83.350 kb on + strand, within HMPREF1058_RS00045at 83.351 kb on - strand, within HMPREF1058_RS00045at 83.351 kb on - strand, within HMPREF1058_RS00045at 83.351 kb on - strand, within HMPREF1058_RS00045at 83.351 kb on - strand, within HMPREF1058_RS00045at 83.353 kb on - strand, within HMPREF1058_RS00045at 83.353 kb on - strand, within HMPREF1058_RS00045at 83.353 kb on - strand, within HMPREF1058_RS00045at 83.353 kb on - strand, within HMPREF1058_RS00045at 83.355 kb on - strand, within HMPREF1058_RS00045at 83.407 kb on + strand, within HMPREF1058_RS00045at 83.408 kb on - strand, within HMPREF1058_RS00045at 83.414 kb on - strand, within HMPREF1058_RS00045at 83.414 kb on - strand, within HMPREF1058_RS00045at 83.516 kb on - strand, within HMPREF1058_RS00045at 83.620 kb on - strand, within HMPREF1058_RS00045at 83.631 kb on + strand, within HMPREF1058_RS00045at 83.678 kb on + strand, within HMPREF1058_RS00045at 83.679 kb on - strand, within HMPREF1058_RS00045at 83.679 kb on - strand, within HMPREF1058_RS00045at 83.715 kb on - strand, within HMPREF1058_RS00045at 83.742 kb on + strand, within HMPREF1058_RS00045at 83.772 kb on + strand, within HMPREF1058_RS00045at 83.831 kb on + strandat 83.844 kb on - strandat 83.869 kb on - strandat 83.903 kb on + strandat 83.905 kb on + strandat 83.908 kb on - strandat 83.908 kb on - strandat 83.927 kb on + strandat 83.928 kb on - strandat 84.006 kb on + strandat 84.006 kb on + strandat 84.007 kb on - strandat 84.093 kb on - strandat 84.128 kb on + strandat 84.132 kb on - strandat 84.197 kb on + strandat 84.198 kb on - strandat 84.382 kb on + strand, within HMPREF1058_RS00040at 84.432 kb on + strand, within HMPREF1058_RS00040at 84.436 kb on + strand, within HMPREF1058_RS00040at 84.436 kb on + strand, within HMPREF1058_RS00040at 84.547 kb on + strand, within HMPREF1058_RS00040at 84.619 kb on + strand, within HMPREF1058_RS00040at 84.635 kb on - strand, within HMPREF1058_RS00040at 84.655 kb on + strand, within HMPREF1058_RS00040at 84.656 kb on - strand, within HMPREF1058_RS00040at 84.659 kb on + strand, within HMPREF1058_RS00040at 84.659 kb on + strand, within HMPREF1058_RS00040at 84.660 kb on - strand, within HMPREF1058_RS00040at 84.660 kb on - strand, within HMPREF1058_RS00040at 84.673 kb on - strand, within HMPREF1058_RS00040at 84.849 kb on - strand, within HMPREF1058_RS00040at 84.880 kb on + strand, within HMPREF1058_RS00040at 84.998 kb on + strand, within HMPREF1058_RS00040at 84.999 kb on - strand, within HMPREF1058_RS00040at 85.009 kb on - strand, within HMPREF1058_RS00040at 85.017 kb on - strand, within HMPREF1058_RS00040at 85.063 kb on - strand, within HMPREF1058_RS00040at 85.134 kb on + strand, within HMPREF1058_RS00040at 85.200 kb on + strand, within HMPREF1058_RS00040at 85.201 kb on - strand, within HMPREF1058_RS00040at 85.201 kb on - strand, within HMPREF1058_RS00040at 85.212 kb on + strand, within HMPREF1058_RS00040at 85.323 kb on - strand, within HMPREF1058_RS00040at 85.342 kb on + strand, within HMPREF1058_RS00040at 85.377 kb on + strand, within HMPREF1058_RS00040at 85.474 kb on + strand, within HMPREF1058_RS00040at 85.475 kb on - strand, within HMPREF1058_RS00040at 85.481 kb on + strand, within HMPREF1058_RS00040at 85.507 kb on - strand, within HMPREF1058_RS00040at 85.583 kb on - strand, within HMPREF1058_RS00040at 85.629 kb on + strand, within HMPREF1058_RS00040at 85.660 kb on + strand, within HMPREF1058_RS00040at 85.691 kb on - strand, within HMPREF1058_RS00040at 85.699 kb on + strand, within HMPREF1058_RS00040at 85.716 kb on + strand, within HMPREF1058_RS00040at 85.717 kb on - strand, within HMPREF1058_RS00040at 85.728 kb on - strand, within HMPREF1058_RS00040at 85.728 kb on - strand, within HMPREF1058_RS00040at 85.755 kb on - strand, within HMPREF1058_RS00040at 85.771 kb on - strand, within HMPREF1058_RS00040at 85.778 kb on + strand, within HMPREF1058_RS00040at 85.778 kb on + strand, within HMPREF1058_RS00040at 85.779 kb on - strand, within HMPREF1058_RS00040at 85.850 kb on - strand, within HMPREF1058_RS00040at 85.854 kb on - strand, within HMPREF1058_RS00040at 85.887 kb on + strand, within HMPREF1058_RS00040at 85.904 kb on + strand, within HMPREF1058_RS00040at 85.904 kb on + strand, within HMPREF1058_RS00040at 85.905 kb on - strand, within HMPREF1058_RS00040at 85.957 kb on - strandat 85.965 kb on + strandat 85.966 kb on - strandat 85.966 kb on - strandat 86.040 kb on + strandat 86.080 kb on - strandat 86.092 kb on - strandat 86.377 kb on - strandat 86.457 kb on + strand, within HMPREF1058_RS00035at 86.491 kb on - strand, within HMPREF1058_RS00035at 86.491 kb on - strand, within HMPREF1058_RS00035at 86.525 kb on - strand, within HMPREF1058_RS00035at 86.526 kb on + strand, within HMPREF1058_RS00035at 86.599 kb on - strand, within HMPREF1058_RS00035at 86.649 kb on + strand, within HMPREF1058_RS00035at 86.663 kb on - strand, within HMPREF1058_RS00035at 86.690 kb on + strand, within HMPREF1058_RS00035at 86.692 kb on + strand, within HMPREF1058_RS00035at 86.692 kb on + strand, within HMPREF1058_RS00035at 86.723 kb on - strand, within HMPREF1058_RS00035at 86.747 kb on + strand, within HMPREF1058_RS00035at 86.747 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.759 kb on + strand, within HMPREF1058_RS00035at 86.844 kb on + strand, within HMPREF1058_RS00035at 86.845 kb on - strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.847 kb on - strand, within HMPREF1058_RS00035at 86.847 kb on - strand, within HMPREF1058_RS00035at 86.897 kb on + strand, within HMPREF1058_RS00035at 87.012 kb on + strand, within HMPREF1058_RS00035at 87.023 kb on - strand, within HMPREF1058_RS00035at 87.051 kb on + strand, within HMPREF1058_RS00035at 87.051 kb on + strand, within HMPREF1058_RS00035at 87.060 kb on + strand, within HMPREF1058_RS00035

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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83,155 - HMPREF1058_RS00045 0.67 -2.4
83,227 + HMPREF1058_RS00045 0.70 -2.7
83,228 - HMPREF1058_RS00045 0.70 -0.8
83,241 - HMPREF1058_RS00045 0.70 -1.0
83,258 + HMPREF1058_RS00045 0.71 -0.2
83,258 + HMPREF1058_RS00045 0.71 -2.1
83,258 + HMPREF1058_RS00045 0.71 -1.4
83,261 - HMPREF1058_RS00045 0.71 -0.7
83,285 + HMPREF1058_RS00045 0.72 -1.1
83,286 - HMPREF1058_RS00045 0.72 +0.5
83,309 - HMPREF1058_RS00045 0.73 +0.5
83,345 + HMPREF1058_RS00045 0.74 -1.8
83,345 + HMPREF1058_RS00045 0.74 -1.9
83,348 + HMPREF1058_RS00045 0.74 -2.1
83,349 - HMPREF1058_RS00045 0.74 -0.8
83,350 + -0.2
83,350 + HMPREF1058_RS00045 0.74 -1.6
83,351 - HMPREF1058_RS00045 0.74 -0.1
83,351 - HMPREF1058_RS00045 0.74 -0.9
83,351 - HMPREF1058_RS00045 0.74 -3.4
83,351 - HMPREF1058_RS00045 0.74 +0.8
83,353 - HMPREF1058_RS00045 0.74 -1.4
83,353 - HMPREF1058_RS00045 0.74 +1.4
83,353 - HMPREF1058_RS00045 0.74 -0.2
83,353 - HMPREF1058_RS00045 0.74 -1.4
83,355 - HMPREF1058_RS00045 0.74 -1.7
83,407 + HMPREF1058_RS00045 0.76 -0.9
83,408 - HMPREF1058_RS00045 0.76 +0.4
83,414 - HMPREF1058_RS00045 0.76 -1.0
83,414 - HMPREF1058_RS00045 0.76 -2.2
83,516 - HMPREF1058_RS00045 0.80 +0.2
83,620 - HMPREF1058_RS00045 0.84 -0.2
83,631 + HMPREF1058_RS00045 0.84 -1.9
83,678 + HMPREF1058_RS00045 0.86 -1.5
83,679 - HMPREF1058_RS00045 0.86 -1.5
83,679 - HMPREF1058_RS00045 0.86 -2.0
83,715 - HMPREF1058_RS00045 0.87 +1.5
83,742 + HMPREF1058_RS00045 0.88 +1.0
83,772 + HMPREF1058_RS00045 0.89 -2.6
83,831 + -2.3
83,844 - -0.9
83,869 - -1.9
83,903 + -2.3
83,905 + +0.8
83,908 - +1.1
83,908 - -1.3
83,927 + -1.1
83,928 - -2.1
84,006 + -0.9
84,006 + +0.4
84,007 - -0.1
84,093 - -0.2
84,128 + -0.5
84,132 - -1.1
84,197 + -1.8
84,198 - -1.4
84,382 + HMPREF1058_RS00040 0.13 -0.9
84,432 + HMPREF1058_RS00040 0.15 -0.2
84,436 + HMPREF1058_RS00040 0.15 -0.2
84,436 + HMPREF1058_RS00040 0.15 -0.4
84,547 + HMPREF1058_RS00040 0.21 -0.9
84,619 + HMPREF1058_RS00040 0.25 -3.0
84,635 - HMPREF1058_RS00040 0.26 -1.8
84,655 + HMPREF1058_RS00040 0.27 -1.5
84,656 - HMPREF1058_RS00040 0.27 -1.9
84,659 + HMPREF1058_RS00040 0.27 -2.6
84,659 + HMPREF1058_RS00040 0.27 -4.1
84,660 - HMPREF1058_RS00040 0.27 +0.1
84,660 - HMPREF1058_RS00040 0.27 -0.1
84,673 - HMPREF1058_RS00040 0.27 -0.4
84,849 - HMPREF1058_RS00040 0.36 -0.6
84,880 + HMPREF1058_RS00040 0.38 -1.3
84,998 + HMPREF1058_RS00040 0.44 -1.7
84,999 - HMPREF1058_RS00040 0.44 -2.1
85,009 - HMPREF1058_RS00040 0.44 -0.6
85,017 - HMPREF1058_RS00040 0.45 -1.1
85,063 - HMPREF1058_RS00040 0.47 -0.9
85,134 + HMPREF1058_RS00040 0.51 -3.3
85,200 + HMPREF1058_RS00040 0.54 -0.6
85,201 - HMPREF1058_RS00040 0.54 -0.5
85,201 - HMPREF1058_RS00040 0.54 -1.1
85,212 + HMPREF1058_RS00040 0.55 +0.2
85,323 - HMPREF1058_RS00040 0.60 -0.6
85,342 + HMPREF1058_RS00040 0.61 -0.9
85,377 + HMPREF1058_RS00040 0.63 -0.2
85,474 + HMPREF1058_RS00040 0.68 -0.9
85,475 - HMPREF1058_RS00040 0.68 -1.4
85,481 + HMPREF1058_RS00040 0.68 +0.4
85,507 - HMPREF1058_RS00040 0.70 -1.3
85,583 - HMPREF1058_RS00040 0.73 -0.2
85,629 + HMPREF1058_RS00040 0.76 -0.5
85,660 + HMPREF1058_RS00040 0.77 -1.7
85,691 - HMPREF1058_RS00040 0.79 -1.7
85,699 + HMPREF1058_RS00040 0.79 -1.3
85,716 + HMPREF1058_RS00040 0.80 -3.3
85,717 - HMPREF1058_RS00040 0.80 -2.7
85,728 - HMPREF1058_RS00040 0.81 -3.6
85,728 - HMPREF1058_RS00040 0.81 -1.7
85,755 - HMPREF1058_RS00040 0.82 -3.1
85,771 - HMPREF1058_RS00040 0.83 -1.6
85,778 + HMPREF1058_RS00040 0.83 -1.4
85,778 + HMPREF1058_RS00040 0.83 -0.6
85,779 - HMPREF1058_RS00040 0.83 -2.6
85,850 - HMPREF1058_RS00040 0.87 -0.4
85,854 - HMPREF1058_RS00040 0.87 +1.0
85,887 + HMPREF1058_RS00040 0.89 -0.8
85,904 + HMPREF1058_RS00040 0.90 -1.8
85,904 + HMPREF1058_RS00040 0.90 -0.4
85,905 - HMPREF1058_RS00040 0.90 -0.6
85,957 - -2.4
85,965 + -1.0
85,966 - -0.0
85,966 - -2.9
86,040 + +0.5
86,080 - -2.5
86,092 - -0.7
86,377 - -0.2
86,457 + HMPREF1058_RS00035 0.10 +0.8
86,491 - HMPREF1058_RS00035 0.11 -0.8
86,491 - HMPREF1058_RS00035 0.11 -2.0
86,525 - HMPREF1058_RS00035 0.13 -0.3
86,526 + HMPREF1058_RS00035 0.13 -1.2
86,599 - HMPREF1058_RS00035 0.15 -2.7
86,649 + HMPREF1058_RS00035 0.16 -2.0
86,663 - HMPREF1058_RS00035 0.17 -1.3
86,690 + HMPREF1058_RS00035 0.18 -1.0
86,692 + HMPREF1058_RS00035 0.18 +0.5
86,692 + HMPREF1058_RS00035 0.18 -1.9
86,723 - HMPREF1058_RS00035 0.19 -0.1
86,747 + HMPREF1058_RS00035 0.20 -1.6
86,747 + HMPREF1058_RS00035 0.20 -0.9
86,749 + HMPREF1058_RS00035 0.20 -0.9
86,749 + HMPREF1058_RS00035 0.20 +2.4
86,749 + HMPREF1058_RS00035 0.20 -2.4
86,759 + HMPREF1058_RS00035 0.20 -2.2
86,844 + HMPREF1058_RS00035 0.23 -2.1
86,845 - HMPREF1058_RS00035 0.23 -3.0
86,846 + HMPREF1058_RS00035 0.23 -0.9
86,846 + HMPREF1058_RS00035 0.23 -0.2
86,846 + HMPREF1058_RS00035 0.23 -2.1
86,847 - HMPREF1058_RS00035 0.23 -1.7
86,847 - HMPREF1058_RS00035 0.23 +0.4
86,897 + HMPREF1058_RS00035 0.24 -2.7
87,012 + HMPREF1058_RS00035 0.28 -0.9
87,023 - HMPREF1058_RS00035 0.28 -1.1
87,051 + HMPREF1058_RS00035 0.29 -2.1
87,051 + HMPREF1058_RS00035 0.29 -2.6
87,060 + HMPREF1058_RS00035 0.29 -2.6

Or see this region's nucleotide sequence