Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00035

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00040 and HMPREF1058_RS00035 are separated by 18 nucleotides HMPREF1058_RS00040: HMPREF1058_RS00040 - RagB/SusD family nutrient uptake outer membrane protein, at 84,130 to 86,106 _RS00040 HMPREF1058_RS00035: HMPREF1058_RS00035 - TonB-dependent receptor, at 86,125 to 89,307 _RS00035 Position (kb) 86 87 88 89 90Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 85.134 kb on + strand, within HMPREF1058_RS00040at 85.200 kb on + strand, within HMPREF1058_RS00040at 85.201 kb on - strand, within HMPREF1058_RS00040at 85.201 kb on - strand, within HMPREF1058_RS00040at 85.212 kb on + strand, within HMPREF1058_RS00040at 85.323 kb on - strand, within HMPREF1058_RS00040at 85.342 kb on + strand, within HMPREF1058_RS00040at 85.377 kb on + strand, within HMPREF1058_RS00040at 85.474 kb on + strand, within HMPREF1058_RS00040at 85.475 kb on - strand, within HMPREF1058_RS00040at 85.481 kb on + strand, within HMPREF1058_RS00040at 85.507 kb on - strand, within HMPREF1058_RS00040at 85.583 kb on - strand, within HMPREF1058_RS00040at 85.629 kb on + strand, within HMPREF1058_RS00040at 85.660 kb on + strand, within HMPREF1058_RS00040at 85.691 kb on - strand, within HMPREF1058_RS00040at 85.699 kb on + strand, within HMPREF1058_RS00040at 85.716 kb on + strand, within HMPREF1058_RS00040at 85.717 kb on - strand, within HMPREF1058_RS00040at 85.728 kb on - strand, within HMPREF1058_RS00040at 85.728 kb on - strand, within HMPREF1058_RS00040at 85.755 kb on - strand, within HMPREF1058_RS00040at 85.771 kb on - strand, within HMPREF1058_RS00040at 85.778 kb on + strand, within HMPREF1058_RS00040at 85.778 kb on + strand, within HMPREF1058_RS00040at 85.779 kb on - strand, within HMPREF1058_RS00040at 85.850 kb on - strand, within HMPREF1058_RS00040at 85.854 kb on - strand, within HMPREF1058_RS00040at 85.887 kb on + strand, within HMPREF1058_RS00040at 85.904 kb on + strand, within HMPREF1058_RS00040at 85.904 kb on + strand, within HMPREF1058_RS00040at 85.905 kb on - strand, within HMPREF1058_RS00040at 85.957 kb on - strandat 85.965 kb on + strandat 85.966 kb on - strandat 85.966 kb on - strandat 86.040 kb on + strandat 86.080 kb on - strandat 86.092 kb on - strandat 86.377 kb on - strandat 86.457 kb on + strand, within HMPREF1058_RS00035at 86.491 kb on - strand, within HMPREF1058_RS00035at 86.491 kb on - strand, within HMPREF1058_RS00035at 86.525 kb on - strand, within HMPREF1058_RS00035at 86.526 kb on + strand, within HMPREF1058_RS00035at 86.599 kb on - strand, within HMPREF1058_RS00035at 86.649 kb on + strand, within HMPREF1058_RS00035at 86.663 kb on - strand, within HMPREF1058_RS00035at 86.690 kb on + strand, within HMPREF1058_RS00035at 86.692 kb on + strand, within HMPREF1058_RS00035at 86.692 kb on + strand, within HMPREF1058_RS00035at 86.723 kb on - strand, within HMPREF1058_RS00035at 86.747 kb on + strand, within HMPREF1058_RS00035at 86.747 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.749 kb on + strand, within HMPREF1058_RS00035at 86.759 kb on + strand, within HMPREF1058_RS00035at 86.844 kb on + strand, within HMPREF1058_RS00035at 86.845 kb on - strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.846 kb on + strand, within HMPREF1058_RS00035at 86.847 kb on - strand, within HMPREF1058_RS00035at 86.847 kb on - strand, within HMPREF1058_RS00035at 86.897 kb on + strand, within HMPREF1058_RS00035at 87.012 kb on + strand, within HMPREF1058_RS00035at 87.023 kb on - strand, within HMPREF1058_RS00035at 87.051 kb on + strand, within HMPREF1058_RS00035at 87.051 kb on + strand, within HMPREF1058_RS00035at 87.060 kb on + strand, within HMPREF1058_RS00035at 87.114 kb on + strand, within HMPREF1058_RS00035at 87.121 kb on + strand, within HMPREF1058_RS00035at 87.156 kb on + strand, within HMPREF1058_RS00035at 87.156 kb on + strand, within HMPREF1058_RS00035at 87.262 kb on - strand, within HMPREF1058_RS00035at 87.268 kb on + strand, within HMPREF1058_RS00035at 87.269 kb on - strand, within HMPREF1058_RS00035at 87.269 kb on - strand, within HMPREF1058_RS00035at 87.272 kb on + strand, within HMPREF1058_RS00035at 87.285 kb on + strand, within HMPREF1058_RS00035at 87.286 kb on - strand, within HMPREF1058_RS00035at 87.342 kb on + strand, within HMPREF1058_RS00035at 87.518 kb on + strand, within HMPREF1058_RS00035at 87.518 kb on + strand, within HMPREF1058_RS00035at 87.581 kb on + strand, within HMPREF1058_RS00035at 87.581 kb on + strand, within HMPREF1058_RS00035at 87.581 kb on + strand, within HMPREF1058_RS00035at 87.589 kb on - strand, within HMPREF1058_RS00035at 87.599 kb on + strand, within HMPREF1058_RS00035at 87.599 kb on + strand, within HMPREF1058_RS00035at 87.599 kb on + strand, within HMPREF1058_RS00035at 87.644 kb on + strand, within HMPREF1058_RS00035at 87.649 kb on + strand, within HMPREF1058_RS00035at 87.663 kb on + strand, within HMPREF1058_RS00035at 87.725 kb on + strand, within HMPREF1058_RS00035at 87.744 kb on + strand, within HMPREF1058_RS00035at 87.784 kb on - strand, within HMPREF1058_RS00035at 87.821 kb on + strand, within HMPREF1058_RS00035at 87.821 kb on + strand, within HMPREF1058_RS00035at 87.852 kb on + strand, within HMPREF1058_RS00035at 87.895 kb on + strand, within HMPREF1058_RS00035at 87.896 kb on - strand, within HMPREF1058_RS00035at 87.932 kb on + strand, within HMPREF1058_RS00035at 87.933 kb on - strand, within HMPREF1058_RS00035at 87.933 kb on - strand, within HMPREF1058_RS00035at 88.044 kb on - strand, within HMPREF1058_RS00035at 88.047 kb on - strand, within HMPREF1058_RS00035at 88.085 kb on + strand, within HMPREF1058_RS00035at 88.086 kb on - strand, within HMPREF1058_RS00035at 88.156 kb on - strand, within HMPREF1058_RS00035at 88.187 kb on + strand, within HMPREF1058_RS00035at 88.188 kb on - strand, within HMPREF1058_RS00035at 88.204 kb on - strand, within HMPREF1058_RS00035at 88.206 kb on - strandat 88.266 kb on - strand, within HMPREF1058_RS00035at 88.270 kb on + strand, within HMPREF1058_RS00035at 88.271 kb on - strand, within HMPREF1058_RS00035at 88.293 kb on + strand, within HMPREF1058_RS00035at 88.386 kb on + strand, within HMPREF1058_RS00035at 88.387 kb on - strand, within HMPREF1058_RS00035at 88.441 kb on + strand, within HMPREF1058_RS00035at 88.442 kb on - strand, within HMPREF1058_RS00035at 88.551 kb on + strand, within HMPREF1058_RS00035at 88.595 kb on - strand, within HMPREF1058_RS00035at 88.628 kb on - strand, within HMPREF1058_RS00035at 88.630 kb on + strand, within HMPREF1058_RS00035at 88.633 kb on - strand, within HMPREF1058_RS00035at 88.662 kb on + strand, within HMPREF1058_RS00035at 88.671 kb on + strand, within HMPREF1058_RS00035at 88.671 kb on + strand, within HMPREF1058_RS00035at 88.674 kb on + strand, within HMPREF1058_RS00035at 88.674 kb on + strand, within HMPREF1058_RS00035at 88.674 kb on + strand, within HMPREF1058_RS00035at 88.675 kb on - strand, within HMPREF1058_RS00035at 88.723 kb on - strand, within HMPREF1058_RS00035at 88.815 kb on + strand, within HMPREF1058_RS00035at 88.816 kb on - strand, within HMPREF1058_RS00035at 88.862 kb on - strand, within HMPREF1058_RS00035at 88.873 kb on - strand, within HMPREF1058_RS00035at 88.907 kb on + strand, within HMPREF1058_RS00035at 88.908 kb on - strand, within HMPREF1058_RS00035at 88.908 kb on - strand, within HMPREF1058_RS00035at 89.021 kb on - strandat 89.026 kb on - strandat 89.074 kb on - strandat 89.074 kb on - strandat 89.074 kb on - strandat 89.076 kb on + strandat 89.080 kb on + strandat 89.118 kb on + strandat 89.118 kb on + strandat 89.118 kb on + strandat 89.138 kb on - strandat 89.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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85,134 + HMPREF1058_RS00040 0.51 -3.3
85,200 + HMPREF1058_RS00040 0.54 -0.6
85,201 - HMPREF1058_RS00040 0.54 -0.5
85,201 - HMPREF1058_RS00040 0.54 -1.1
85,212 + HMPREF1058_RS00040 0.55 +0.2
85,323 - HMPREF1058_RS00040 0.60 -0.6
85,342 + HMPREF1058_RS00040 0.61 -0.9
85,377 + HMPREF1058_RS00040 0.63 -0.2
85,474 + HMPREF1058_RS00040 0.68 -0.9
85,475 - HMPREF1058_RS00040 0.68 -1.4
85,481 + HMPREF1058_RS00040 0.68 +0.4
85,507 - HMPREF1058_RS00040 0.70 -1.3
85,583 - HMPREF1058_RS00040 0.73 -0.2
85,629 + HMPREF1058_RS00040 0.76 -0.5
85,660 + HMPREF1058_RS00040 0.77 -1.7
85,691 - HMPREF1058_RS00040 0.79 -1.7
85,699 + HMPREF1058_RS00040 0.79 -1.3
85,716 + HMPREF1058_RS00040 0.80 -3.3
85,717 - HMPREF1058_RS00040 0.80 -2.7
85,728 - HMPREF1058_RS00040 0.81 -3.6
85,728 - HMPREF1058_RS00040 0.81 -1.7
85,755 - HMPREF1058_RS00040 0.82 -3.1
85,771 - HMPREF1058_RS00040 0.83 -1.6
85,778 + HMPREF1058_RS00040 0.83 -1.4
85,778 + HMPREF1058_RS00040 0.83 -0.6
85,779 - HMPREF1058_RS00040 0.83 -2.6
85,850 - HMPREF1058_RS00040 0.87 -0.4
85,854 - HMPREF1058_RS00040 0.87 +1.0
85,887 + HMPREF1058_RS00040 0.89 -0.8
85,904 + HMPREF1058_RS00040 0.90 -1.8
85,904 + HMPREF1058_RS00040 0.90 -0.4
85,905 - HMPREF1058_RS00040 0.90 -0.6
85,957 - -2.4
85,965 + -1.0
85,966 - -0.0
85,966 - -2.9
86,040 + +0.5
86,080 - -2.5
86,092 - -0.7
86,377 - -0.2
86,457 + HMPREF1058_RS00035 0.10 +0.8
86,491 - HMPREF1058_RS00035 0.11 -0.8
86,491 - HMPREF1058_RS00035 0.11 -2.0
86,525 - HMPREF1058_RS00035 0.13 -0.3
86,526 + HMPREF1058_RS00035 0.13 -1.2
86,599 - HMPREF1058_RS00035 0.15 -2.7
86,649 + HMPREF1058_RS00035 0.16 -2.0
86,663 - HMPREF1058_RS00035 0.17 -1.3
86,690 + HMPREF1058_RS00035 0.18 -1.0
86,692 + HMPREF1058_RS00035 0.18 +0.5
86,692 + HMPREF1058_RS00035 0.18 -1.9
86,723 - HMPREF1058_RS00035 0.19 -0.1
86,747 + HMPREF1058_RS00035 0.20 -1.6
86,747 + HMPREF1058_RS00035 0.20 -0.9
86,749 + HMPREF1058_RS00035 0.20 -0.9
86,749 + HMPREF1058_RS00035 0.20 +2.4
86,749 + HMPREF1058_RS00035 0.20 -2.4
86,759 + HMPREF1058_RS00035 0.20 -2.2
86,844 + HMPREF1058_RS00035 0.23 -2.1
86,845 - HMPREF1058_RS00035 0.23 -3.0
86,846 + HMPREF1058_RS00035 0.23 -0.9
86,846 + HMPREF1058_RS00035 0.23 -0.2
86,846 + HMPREF1058_RS00035 0.23 -2.1
86,847 - HMPREF1058_RS00035 0.23 -1.7
86,847 - HMPREF1058_RS00035 0.23 +0.4
86,897 + HMPREF1058_RS00035 0.24 -2.7
87,012 + HMPREF1058_RS00035 0.28 -0.9
87,023 - HMPREF1058_RS00035 0.28 -1.1
87,051 + HMPREF1058_RS00035 0.29 -2.1
87,051 + HMPREF1058_RS00035 0.29 -2.6
87,060 + HMPREF1058_RS00035 0.29 -2.6
87,114 + HMPREF1058_RS00035 0.31 -2.8
87,121 + HMPREF1058_RS00035 0.31 -2.1
87,156 + HMPREF1058_RS00035 0.32 -2.1
87,156 + HMPREF1058_RS00035 0.32 -1.9
87,262 - HMPREF1058_RS00035 0.36 -1.9
87,268 + HMPREF1058_RS00035 0.36 -1.4
87,269 - HMPREF1058_RS00035 0.36 +0.4
87,269 - HMPREF1058_RS00035 0.36 -1.2
87,272 + HMPREF1058_RS00035 0.36 -0.6
87,285 + HMPREF1058_RS00035 0.36 -2.2
87,286 - HMPREF1058_RS00035 0.36 -2.2
87,342 + HMPREF1058_RS00035 0.38 -2.9
87,518 + HMPREF1058_RS00035 0.44 +0.0
87,518 + HMPREF1058_RS00035 0.44 -0.6
87,581 + HMPREF1058_RS00035 0.46 -0.2
87,581 + HMPREF1058_RS00035 0.46 -1.4
87,581 + HMPREF1058_RS00035 0.46 -1.7
87,589 - HMPREF1058_RS00035 0.46 -1.8
87,599 + HMPREF1058_RS00035 0.46 -1.0
87,599 + HMPREF1058_RS00035 0.46 -3.5
87,599 + HMPREF1058_RS00035 0.46 -1.8
87,644 + HMPREF1058_RS00035 0.48 -2.3
87,649 + HMPREF1058_RS00035 0.48 -2.4
87,663 + HMPREF1058_RS00035 0.48 -1.6
87,725 + HMPREF1058_RS00035 0.50 -2.1
87,744 + HMPREF1058_RS00035 0.51 -0.8
87,784 - HMPREF1058_RS00035 0.52 -1.3
87,821 + HMPREF1058_RS00035 0.53 +0.5
87,821 + HMPREF1058_RS00035 0.53 -2.2
87,852 + HMPREF1058_RS00035 0.54 -0.8
87,895 + HMPREF1058_RS00035 0.56 -3.2
87,896 - HMPREF1058_RS00035 0.56 -2.3
87,932 + HMPREF1058_RS00035 0.57 -1.1
87,933 - HMPREF1058_RS00035 0.57 -1.4
87,933 - HMPREF1058_RS00035 0.57 -2.0
88,044 - HMPREF1058_RS00035 0.60 -2.3
88,047 - HMPREF1058_RS00035 0.60 +0.8
88,085 + HMPREF1058_RS00035 0.62 -1.3
88,086 - HMPREF1058_RS00035 0.62 +0.5
88,156 - HMPREF1058_RS00035 0.64 -0.7
88,187 + HMPREF1058_RS00035 0.65 -1.4
88,188 - HMPREF1058_RS00035 0.65 -0.9
88,204 - HMPREF1058_RS00035 0.65 -0.8
88,206 - +1.8
88,266 - HMPREF1058_RS00035 0.67 -1.0
88,270 + HMPREF1058_RS00035 0.67 -0.7
88,271 - HMPREF1058_RS00035 0.67 -1.5
88,293 + HMPREF1058_RS00035 0.68 -0.6
88,386 + HMPREF1058_RS00035 0.71 -0.3
88,387 - HMPREF1058_RS00035 0.71 -1.2
88,441 + HMPREF1058_RS00035 0.73 -1.7
88,442 - HMPREF1058_RS00035 0.73 +0.4
88,551 + HMPREF1058_RS00035 0.76 -2.4
88,595 - HMPREF1058_RS00035 0.78 +0.1
88,628 - HMPREF1058_RS00035 0.79 +2.7
88,630 + HMPREF1058_RS00035 0.79 -0.9
88,633 - HMPREF1058_RS00035 0.79 -1.7
88,662 + HMPREF1058_RS00035 0.80 -1.0
88,671 + HMPREF1058_RS00035 0.80 -0.9
88,671 + HMPREF1058_RS00035 0.80 -0.9
88,674 + HMPREF1058_RS00035 0.80 -0.4
88,674 + HMPREF1058_RS00035 0.80 -2.1
88,674 + HMPREF1058_RS00035 0.80 -1.8
88,675 - HMPREF1058_RS00035 0.80 -3.8
88,723 - HMPREF1058_RS00035 0.82 +1.0
88,815 + HMPREF1058_RS00035 0.85 -3.0
88,816 - HMPREF1058_RS00035 0.85 -0.6
88,862 - HMPREF1058_RS00035 0.86 -0.3
88,873 - HMPREF1058_RS00035 0.86 +0.8
88,907 + HMPREF1058_RS00035 0.87 +1.1
88,908 - HMPREF1058_RS00035 0.87 -1.3
88,908 - HMPREF1058_RS00035 0.87 -0.8
89,021 - -2.1
89,026 - -0.5
89,074 - -1.5
89,074 - -1.6
89,074 - -0.8
89,076 + -0.4
89,080 + +0.3
89,118 + -1.3
89,118 + +1.0
89,118 + +0.8
89,138 - -1.8
89,178 + +0.1

Or see this region's nucleotide sequence