Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01450 and HMPREF1058_RS01445 overlap by 35 nucleotides HMPREF1058_RS01445 and HMPREF1058_RS21720 are separated by 709 nucleotides HMPREF1058_RS21720 and HMPREF1058_RS0120085 are separated by 117 nucleotides
HMPREF1058_RS01450: HMPREF1058_RS01450 - acetyl-CoA carboxylase biotin carboxylase subunit, at 121,867 to 123,378
_RS01450
HMPREF1058_RS01445: HMPREF1058_RS01445 - cysteine-rich CWC family protein, at 123,344 to 123,595
_RS01445
HMPREF1058_RS21720: HMPREF1058_RS21720 - ribonucleoside-triphosphate reductase, at 124,305 to 124,805
_RS21720
HMPREF1058_RS0120085: HMPREF1058_RS0120085 - IS1182 family transposase, at 124,923 to 126,578
_RS0120085
Position (kb) 124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 123.417 kb on + strand, within HMPREF1058_RS01445 at 123.469 kb on - strand, within HMPREF1058_RS01445 at 123.484 kb on - strand, within HMPREF1058_RS01445 at 123.578 kb on + strand at 123.967 kb on + strand at 124.038 kb on - strand at 124.051 kb on + strand at 124.211 kb on + strand at 124.263 kb on - strand at 124.286 kb on - strand at 124.288 kb on - strand at 124.299 kb on - strand at 124.304 kb on + strand at 124.322 kb on - strand at 124.528 kb on - strand, within HMPREF1058_RS21720 at 124.546 kb on - strand, within HMPREF1058_RS21720 at 124.547 kb on + strand, within HMPREF1058_RS21720 at 124.547 kb on + strand, within HMPREF1058_RS21720 at 124.547 kb on + strand, within HMPREF1058_RS21720 at 124.548 kb on - strand, within HMPREF1058_RS21720 at 124.615 kb on - strand, within HMPREF1058_RS21720 at 124.767 kb on + strand at 124.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 123,417 + HMPREF1058_RS01445 0.29 -3.1 123,469 - HMPREF1058_RS01445 0.50 -0.3 123,484 - HMPREF1058_RS01445 0.56 +1.0 123,578 + -2.6 123,967 + -0.0 124,038 - +0.8 124,051 + +0.5 124,211 + -0.4 124,263 - +0.0 124,286 - +1.2 124,288 - -0.9 124,299 - +0.8 124,304 + -0.4 124,322 - -1.4 124,528 - HMPREF1058_RS21720 0.45 +1.2 124,546 - HMPREF1058_RS21720 0.48 +1.1 124,547 + HMPREF1058_RS21720 0.48 +0.2 124,547 + HMPREF1058_RS21720 0.48 -0.1 124,547 + HMPREF1058_RS21720 0.48 -1.3 124,548 - HMPREF1058_RS21720 0.49 -0.1 124,615 - HMPREF1058_RS21720 0.62 +1.5 124,767 + -0.3 124,768 - +0.0
Or see this region's nucleotide sequence