Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20840

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
115,399	+		HMPREF1058_RS07865	0.84	+0.3
115,400	-		HMPREF1058_RS07865	0.84	+0.3
115,400	-		HMPREF1058_RS07865	0.84	-1.3
115,418	+		HMPREF1058_RS07865	0.85	-1.3
115,471	+		HMPREF1058_RS07865	0.88	+3.0
115,476	+		HMPREF1058_RS07865	0.88	+0.3
115,479	+		HMPREF1058_RS07865	0.88	+2.0
115,482	-		HMPREF1058_RS07865	0.89	+0.3
115,482	-		HMPREF1058_RS07865	0.89	+0.4
115,527	-				-0.5
115,527	-				+0.4
115,539	-				+0.7
115,602	-				+0.4
115,603	+				-1.7
115,604	-				-1.1
115,604	-				+0.7
115,642	+				+1.0
115,710	+				+2.5
115,743	-				+0.5
115,750	+				+0.3
115,820	+		HMPREF1058_RS07860	0.20	-0.2
115,910	+		HMPREF1058_RS07860	0.46	+0.4
115,911	-		HMPREF1058_RS07860	0.46	-0.6
115,911	-		HMPREF1058_RS07860	0.46	+0.2
115,912	+		HMPREF1058_RS07860	0.46	-1.5
115,912	+		HMPREF1058_RS07860	0.46	-0.5
115,913	-		HMPREF1058_RS07860	0.46	+0.4
115,952	-		HMPREF1058_RS07860	0.57	+0.3
116,120	-				+0.5
116,312	+				+0.2
116,312	+				-0.2
116,313	-				+1.1
116,313	-				+0.8
116,315	+				+0.4
116,316	-				-0.0
116,316	-				+1.4
116,325	+				-0.3
116,401	-		HMPREF1058_RS20840	0.24	+0.2
116,408	-		HMPREF1058_RS20840	0.27	+1.0
116,429	+		HMPREF1058_RS20840	0.35	+1.3
116,429	+		HMPREF1058_RS20840	0.35	-0.1
116,494	-		HMPREF1058_RS20840	0.61	+0.4
116,505	+		HMPREF1058_RS20840	0.66	+0.3
116,536	+		HMPREF1058_RS20840	0.78	+0.3
116,538	+		HMPREF1058_RS20840	0.79	+0.8
116,538	+		HMPREF1058_RS20840	0.79	+0.6
116,538	+		HMPREF1058_RS20840	0.79	+1.3
116,633	-				+2.4
116,634	+				+0.8
116,635	-				+0.0
116,635	-				+1.8
116,635	-				+0.0
116,666	-				-1.1
116,674	+				-2.1
116,676	+				+0.4
116,677	-				-1.0
116,726	-				-0.1
116,867	-		HMPREF1058_RS07855	0.17	-3.1
116,869	-		HMPREF1058_RS07855	0.17	-0.2
116,872	+		HMPREF1058_RS07855	0.18	-1.3
116,933	-		HMPREF1058_RS07855	0.23	+1.2
116,993	-		HMPREF1058_RS07855	0.29	-1.7
116,993	-		HMPREF1058_RS07855	0.29	+0.6
116,995	+		HMPREF1058_RS07855	0.29	+1.4
116,995	+		HMPREF1058_RS07855	0.29	+0.0
116,995	+		HMPREF1058_RS07855	0.29	-0.2
116,996	-		HMPREF1058_RS07855	0.29	-0.1
117,045	+		HMPREF1058_RS07855	0.34	+1.2
117,132	+		HMPREF1058_RS07855	0.41	-0.4
117,133	-		HMPREF1058_RS07855	0.42	-1.7
117,149	+		HMPREF1058_RS07855	0.43	-1.8
117,158	+		HMPREF1058_RS07855	0.44	+1.8
117,234	-		HMPREF1058_RS07855	0.51	-1.0
117,234	-		HMPREF1058_RS07855	0.51	-1.6
117,234	-		HMPREF1058_RS07855	0.51	+0.4
117,234	-		HMPREF1058_RS07855	0.51	-0.3
117,253	+		HMPREF1058_RS07855	0.53	-0.6
117,333	-		HMPREF1058_RS07855	0.60	+0.5
117,360	+		HMPREF1058_RS07855	0.62	+0.7
117,361	-		HMPREF1058_RS07855	0.62	-0.8
117,365	+		HMPREF1058_RS07855	0.63	+1.5
117,366	-		HMPREF1058_RS07855	0.63	-0.3
117,366	-		HMPREF1058_RS07855	0.63	-1.2
117,366	-		HMPREF1058_RS07855	0.63	-0.2
117,452	-		HMPREF1058_RS07855	0.71	+0.9
117,492	-		HMPREF1058_RS07855	0.74	-0.8