Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20490

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,002,974	+		HMPREF1058_RS15135	0.14	-0.2
1,002,978	+		HMPREF1058_RS15135	0.15	-0.0
1,002,978	+		HMPREF1058_RS15135	0.15	+0.7
1,002,979	-		HMPREF1058_RS15135	0.15	+0.7
1,002,983	-		HMPREF1058_RS15135	0.15	+0.4
1,002,990	-		HMPREF1058_RS15135	0.16	-0.2
1,003,074	-		HMPREF1058_RS15135	0.24	-0.1
1,003,158	+		HMPREF1058_RS15135	0.31	+0.3
1,003,197	+		HMPREF1058_RS15135	0.35	+0.0
1,003,197	+		HMPREF1058_RS15135	0.35	-1.3
1,003,197	+		HMPREF1058_RS15135	0.35	-0.1
1,003,197	+		HMPREF1058_RS15135	0.35	+0.4
1,003,197	+		HMPREF1058_RS15135	0.35	-0.6
1,003,198	-		HMPREF1058_RS15135	0.35	+0.9
1,003,198	-		HMPREF1058_RS15135	0.35	+0.4
1,003,199	+		HMPREF1058_RS15135	0.35	+0.2
1,003,201	+		HMPREF1058_RS15135	0.35	-0.4
1,003,202	-		HMPREF1058_RS15135	0.35	-2.8
1,003,225	+		HMPREF1058_RS15135	0.38	-0.1
1,003,227	+		HMPREF1058_RS15135	0.38	-0.6
1,003,227	+		HMPREF1058_RS15135	0.38	+0.3
1,003,276	+		HMPREF1058_RS15135	0.42	+0.4
1,003,276	+		HMPREF1058_RS15135	0.42	-0.5
1,003,277	-		HMPREF1058_RS15135	0.42	+0.2
1,003,277	-		HMPREF1058_RS15135	0.42	+0.8
1,003,278	+		HMPREF1058_RS15135	0.42	-0.7
1,003,291	-		HMPREF1058_RS15135	0.44	+0.4
1,003,496	+		HMPREF1058_RS15135	0.63	-0.6
1,003,497	-		HMPREF1058_RS15135	0.63	+1.1
1,003,518	+		HMPREF1058_RS15135	0.65	-0.5
1,003,519	-		HMPREF1058_RS15135	0.65	+0.8
1,003,522	-		HMPREF1058_RS15135	0.65	-1.7
1,003,528	+		HMPREF1058_RS15135	0.66	-0.7
1,003,545	+		HMPREF1058_RS15135	0.67	+0.4
1,003,745	+		HMPREF1058_RS15135	0.86	+0.7
1,003,782	+		HMPREF1058_RS15135	0.89	+0.8
1,003,782	+		HMPREF1058_RS15135	0.89	+0.1
1,003,785	-		HMPREF1058_RS15135	0.89	+0.7
1,003,852	-				-0.8
1,003,852	-				+0.3
1,003,853	+				+0.7
1,004,042	-		HMPREF1058_RS20490	0.38	+0.5
1,004,058	+		HMPREF1058_RS20490	0.47	+0.6
1,004,123	-		HMPREF1058_RS20490	0.83	+1.1
1,004,138	-				+0.6