Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20370

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
63,396	-		HMPREF1058_RS18815	0.54	-1.8
63,533	+		HMPREF1058_RS18815	0.62	-1.1
63,591	+		HMPREF1058_RS18815	0.65	-1.9
63,592	-		HMPREF1058_RS18815	0.65	+0.0
63,656	+		HMPREF1058_RS18815	0.69	+0.1
63,728	-		HMPREF1058_RS18815	0.74	+0.4
63,729	+		HMPREF1058_RS18815	0.74	-1.5
63,913	+		HMPREF1058_RS18815	0.85	-1.2
64,020	-				+0.0
64,080	-				-0.6
64,095	-				-2.1
64,132	-				-0.0
64,147	+				+1.2
64,156	-				-0.6
64,192	-				-1.5
64,201	+				-1.0
64,333	+				+0.6
64,334	-				-0.6
64,353	+				-1.2
64,353	+				+0.9
64,354	-				-0.9
64,365	+				-0.2
64,365	+				+0.5
64,366	-				-0.9
64,366	-				-1.0
64,366	-				-1.7
64,368	-				-1.0
64,368	-				-0.8
64,368	-				-0.8
64,378	+				+0.5
64,379	-				-0.8
64,455	+				-1.0
64,496	+		HMPREF1058_RS20370	0.11	+1.3
64,703	+				-1.8
64,703	+		HMPREF1058_RS20370	0.30	+0.7
64,703	+		HMPREF1058_RS20370	0.30	+2.1
64,703	+		HMPREF1058_RS20370	0.30	+1.4
64,704	-		HMPREF1058_RS20370	0.30	+0.3
64,704	-		HMPREF1058_RS20370	0.30	+0.5
64,745	+		HMPREF1058_RS20370	0.34	-0.5
64,745	+		HMPREF1058_RS20370	0.34	+0.2
64,745	+		HMPREF1058_RS20370	0.34	+0.5
64,777	+		HMPREF1058_RS20370	0.37	+1.3
64,777	+		HMPREF1058_RS20370	0.37	+1.5
64,781	+		HMPREF1058_RS20370	0.37	+0.9
64,782	-		HMPREF1058_RS20370	0.37	+0.7
64,802	+		HMPREF1058_RS20370	0.39	+1.5
64,803	-		HMPREF1058_RS20370	0.39	-1.8
64,853	+		HMPREF1058_RS20370	0.44	+1.8
64,853	+		HMPREF1058_RS20370	0.44	-0.6
64,883	+		HMPREF1058_RS20370	0.46	+0.7
64,883	+		HMPREF1058_RS20370	0.46	+1.5
64,884	-		HMPREF1058_RS20370	0.47	+2.7
64,884	-		HMPREF1058_RS20370	0.47	-0.3
64,885	+		HMPREF1058_RS20370	0.47	+0.3
64,885	+		HMPREF1058_RS20370	0.47	+0.3
65,119	+		HMPREF1058_RS20370	0.68	+0.8
65,138	+		HMPREF1058_RS20370	0.70	-0.6
65,161	+		HMPREF1058_RS20370	0.72	-0.7
65,162	-		HMPREF1058_RS20370	0.72	-0.9
65,166	+		HMPREF1058_RS20370	0.72	+0.6
65,166	+		HMPREF1058_RS20370	0.72	+1.2
65,221	-		HMPREF1058_RS20370	0.78	-0.6
65,221	-		HMPREF1058_RS20370	0.78	+0.9
65,255	+		HMPREF1058_RS20370	0.81	-0.5
65,255	+		HMPREF1058_RS20370	0.81	+1.0
65,284	-		HMPREF1058_RS20370	0.83	-1.1
65,284	-		HMPREF1058_RS20370	0.83	-0.8
65,318	+		HMPREF1058_RS20370	0.86	+0.3
65,318	+		HMPREF1058_RS20370	0.86	+1.1
65,318	+		HMPREF1058_RS20370	0.86	+0.7
65,319	-		HMPREF1058_RS20370	0.87	-0.4
65,363	+				-0.8
65,365	+				+1.8
65,390	+				+1.0
65,445	-				-0.4
65,450	+				+0.8
65,451	-				+0.2
65,461	+				+1.1
65,462	-				+0.0
65,468	+				+0.1
65,496	-				+0.4
65,530	+				-0.6
65,531	-				-0.3
65,573	+				-1.8
65,628	+		HMPREF1058_RS18810	0.14	-0.9
65,676	-		HMPREF1058_RS18810	0.21	+0.4
65,703	-		HMPREF1058_RS18810	0.25	+0.4
65,707	+		HMPREF1058_RS18810	0.25	-0.7
65,717	+		HMPREF1058_RS18810	0.26	+0.7
65,952	+		HMPREF1058_RS18810	0.60	+0.3
65,952	+				-1.2
66,000	-		HMPREF1058_RS18810	0.67	-0.3
66,047	+		HMPREF1058_RS18810	0.74	-0.2
66,048	-		HMPREF1058_RS18810	0.74	-1.6
66,199	-				+0.5
66,199	-				+0.0
66,199	-				+1.2
66,221	-				-0.8
66,228	+				-0.1
66,228	+				-2.7
66,306	+		HMPREF1058_RS18805	0.14	-0.2
66,309	+		HMPREF1058_RS18805	0.15	+0.2
66,354	+		HMPREF1058_RS18805	0.23	-0.3
66,416	-		HMPREF1058_RS18805	0.34	-0.7
66,448	+		HMPREF1058_RS18805	0.40	-1.0