Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21565 and HMPREF1058_RS19210 are separated by 4 nucleotides HMPREF1058_RS19210 and HMPREF1058_RS19205 overlap by 4 nucleotides HMPREF1058_RS19205 and HMPREF1058_RS19200 overlap by 10 nucleotides HMPREF1058_RS19200 and HMPREF1058_RS19195 are separated by 2 nucleotides HMPREF1058_RS19195 and HMPREF1058_RS19190 are separated by 3 nucleotides
HMPREF1058_RS21565: HMPREF1058_RS21565 - hypothetical protein, at 2,055 to 2,735
_RS21565
HMPREF1058_RS19210: HMPREF1058_RS19210 - hypothetical protein, at 2,740 to 3,141
_RS19210
HMPREF1058_RS19205: HMPREF1058_RS19205 - hypothetical protein, at 3,138 to 3,599
_RS19205
HMPREF1058_RS19200: HMPREF1058_RS19200 - hypothetical protein, at 3,590 to 3,913
_RS19200
HMPREF1058_RS19195: HMPREF1058_RS19195 - hypothetical protein, at 3,916 to 4,233
_RS19195
HMPREF1058_RS19190: HMPREF1058_RS19190 - hypothetical protein, at 4,237 to 5,541
_RS19190
Position (kb)
3
4 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2.709 kb on - strand at 2.712 kb on - strand at 2.759 kb on + strand at 2.760 kb on - strand at 2.764 kb on + strand at 2.769 kb on + strand at 3.010 kb on + strand, within HMPREF1058_RS19210 at 3.010 kb on + strand, within HMPREF1058_RS19210 at 3.011 kb on - strand, within HMPREF1058_RS19210 at 3.012 kb on + strand, within HMPREF1058_RS19210 at 3.104 kb on + strand at 3.104 kb on + strand at 3.108 kb on + strand at 3.109 kb on - strand at 3.109 kb on - strand at 3.164 kb on + strand at 3.217 kb on - strand, within HMPREF1058_RS19205 at 3.271 kb on - strand, within HMPREF1058_RS19205 at 3.317 kb on + strand, within HMPREF1058_RS19205 at 3.357 kb on + strand, within HMPREF1058_RS19205 at 3.376 kb on + strand, within HMPREF1058_RS19205 at 3.522 kb on + strand, within HMPREF1058_RS19205 at 3.600 kb on - strand at 3.611 kb on + strand at 3.611 kb on + strand at 3.695 kb on - strand, within HMPREF1058_RS19200 at 3.735 kb on + strand, within HMPREF1058_RS19200 at 3.889 kb on + strand at 3.899 kb on - strand at 3.926 kb on - strand at 3.929 kb on + strand at 3.929 kb on + strand at 3.929 kb on + strand at 3.930 kb on - strand at 3.976 kb on - strand at 4.002 kb on + strand, within HMPREF1058_RS19195 at 4.003 kb on - strand, within HMPREF1058_RS19195 at 4.003 kb on - strand, within HMPREF1058_RS19195 at 4.183 kb on - strand, within HMPREF1058_RS19195 at 4.194 kb on - strand, within HMPREF1058_RS19195 at 4.194 kb on - strand, within HMPREF1058_RS19195 at 4.234 kb on - strand at 4.238 kb on + strand at 4.398 kb on + strand, within HMPREF1058_RS19190 at 4.398 kb on + strand, within HMPREF1058_RS19190 at 4.499 kb on - strand, within HMPREF1058_RS19190 at 4.602 kb on + strand, within HMPREF1058_RS19190 at 4.604 kb on + strand, within HMPREF1058_RS19190 at 4.836 kb on + strand, within HMPREF1058_RS19190
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 2,709 - +1.8 2,712 - -1.0 2,759 + -0.8 2,760 - +0.4 2,764 + +0.0 2,769 + +0.1 3,010 + HMPREF1058_RS19210 0.67 +1.1 3,010 + HMPREF1058_RS19210 0.67 -0.1 3,011 - HMPREF1058_RS19210 0.67 +0.4 3,012 + HMPREF1058_RS19210 0.68 +0.6 3,104 + +0.1 3,104 + +1.4 3,108 + +0.5 3,109 - +0.9 3,109 - -1.7 3,164 + +2.8 3,217 - HMPREF1058_RS19205 0.17 +0.1 3,271 - HMPREF1058_RS19205 0.29 -0.4 3,317 + HMPREF1058_RS19205 0.39 -0.7 3,357 + HMPREF1058_RS19205 0.47 -0.2 3,376 + HMPREF1058_RS19205 0.52 +0.6 3,522 + HMPREF1058_RS19205 0.83 +0.6 3,600 - +1.0 3,611 + -1.3 3,611 + +1.1 3,695 - HMPREF1058_RS19200 0.32 +0.3 3,735 + HMPREF1058_RS19200 0.45 +0.5 3,889 + +1.2 3,899 - +0.3 3,926 - -0.4 3,929 + +0.1 3,929 + -1.7 3,929 + +0.2 3,930 - +0.2 3,976 - -1.1 4,002 + HMPREF1058_RS19195 0.27 -0.2 4,003 - HMPREF1058_RS19195 0.27 +1.4 4,003 - HMPREF1058_RS19195 0.27 +1.0 4,183 - HMPREF1058_RS19195 0.84 +0.7 4,194 - HMPREF1058_RS19195 0.87 -0.1 4,194 - HMPREF1058_RS19195 0.87 +0.2 4,234 - +0.0 4,238 + -1.2 4,398 + HMPREF1058_RS19190 0.12 +0.5 4,398 + HMPREF1058_RS19190 0.12 -0.1 4,499 - HMPREF1058_RS19190 0.20 -1.0 4,602 + HMPREF1058_RS19190 0.28 -0.5 4,604 + HMPREF1058_RS19190 0.28 +0.4 4,836 + HMPREF1058_RS19190 0.46 -2.1
Or see this region's nucleotide sequence