Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19200

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
2,709	-				+1.8
2,712	-				-1.0
2,759	+				-0.8
2,760	-				+0.4
2,764	+				+0.0
2,769	+				+0.1
3,010	+		HMPREF1058_RS19210	0.67	+1.1
3,010	+		HMPREF1058_RS19210	0.67	-0.1
3,011	-		HMPREF1058_RS19210	0.67	+0.4
3,012	+		HMPREF1058_RS19210	0.68	+0.6
3,104	+				+0.1
3,104	+				+1.4
3,108	+				+0.5
3,109	-				+0.9
3,109	-				-1.7
3,164	+				+2.8
3,217	-		HMPREF1058_RS19205	0.17	+0.1
3,271	-		HMPREF1058_RS19205	0.29	-0.4
3,317	+		HMPREF1058_RS19205	0.39	-0.7
3,357	+		HMPREF1058_RS19205	0.47	-0.2
3,376	+		HMPREF1058_RS19205	0.52	+0.6
3,522	+		HMPREF1058_RS19205	0.83	+0.6
3,600	-				+1.0
3,611	+				-1.3
3,611	+				+1.1
3,695	-		HMPREF1058_RS19200	0.32	+0.3
3,735	+		HMPREF1058_RS19200	0.45	+0.5
3,889	+				+1.2
3,899	-				+0.3
3,926	-				-0.4
3,929	+				+0.1
3,929	+				-1.7
3,929	+				+0.2
3,930	-				+0.2
3,976	-				-1.1
4,002	+		HMPREF1058_RS19195	0.27	-0.2
4,003	-		HMPREF1058_RS19195	0.27	+1.4
4,003	-		HMPREF1058_RS19195	0.27	+1.0
4,183	-		HMPREF1058_RS19195	0.84	+0.7
4,194	-		HMPREF1058_RS19195	0.87	-0.1
4,194	-		HMPREF1058_RS19195	0.87	+0.2
4,234	-				+0.0
4,238	+				-1.2
4,398	+		HMPREF1058_RS19190	0.12	+0.5
4,398	+		HMPREF1058_RS19190	0.12	-0.1
4,499	-		HMPREF1058_RS19190	0.20	-1.0
4,602	+		HMPREF1058_RS19190	0.28	-0.5
4,604	+		HMPREF1058_RS19190	0.28	+0.4
4,836	+		HMPREF1058_RS19190	0.46	-2.1