Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19190 and HMPREF1058_RS19185 are separated by 21 nucleotides HMPREF1058_RS19185 and HMPREF1058_RS19180 are separated by 24 nucleotides
HMPREF1058_RS19190: HMPREF1058_RS19190 - hypothetical protein, at 4,237 to 5,541
_RS19190
HMPREF1058_RS19185: HMPREF1058_RS19185 - hypothetical protein, at 5,563 to 5,961
_RS19185
HMPREF1058_RS19180: HMPREF1058_RS19180 - hypothetical protein, at 5,986 to 6,684
_RS19180
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.602 kb on + strand, within HMPREF1058_RS19190 at 4.604 kb on + strand, within HMPREF1058_RS19190 at 4.836 kb on + strand, within HMPREF1058_RS19190 at 4.981 kb on + strand, within HMPREF1058_RS19190 at 5.188 kb on + strand, within HMPREF1058_RS19190 at 5.188 kb on + strand, within HMPREF1058_RS19190 at 5.189 kb on - strand, within HMPREF1058_RS19190 at 5.233 kb on - strand, within HMPREF1058_RS19190 at 5.356 kb on + strand, within HMPREF1058_RS19190 at 5.356 kb on + strand, within HMPREF1058_RS19190 at 5.356 kb on + strand, within HMPREF1058_RS19190 at 5.360 kb on + strand, within HMPREF1058_RS19190 at 5.361 kb on - strand, within HMPREF1058_RS19190 at 5.361 kb on - strand, within HMPREF1058_RS19190 at 5.435 kb on + strand at 5.506 kb on - strand at 5.558 kb on + strand at 5.579 kb on + strand at 5.580 kb on - strand at 5.581 kb on + strand at 5.581 kb on + strand at 5.581 kb on + strand at 5.721 kb on - strand, within HMPREF1058_RS19185 at 5.784 kb on - strand, within HMPREF1058_RS19185 at 5.797 kb on - strand, within HMPREF1058_RS19185 at 5.811 kb on + strand, within HMPREF1058_RS19185 at 5.812 kb on - strand, within HMPREF1058_RS19185 at 6.116 kb on + strand, within HMPREF1058_RS19180 at 6.200 kb on - strand, within HMPREF1058_RS19180 at 6.396 kb on + strand, within HMPREF1058_RS19180 at 6.544 kb on + strand, within HMPREF1058_RS19180 at 6.603 kb on + strand, within HMPREF1058_RS19180 at 6.610 kb on + strand, within HMPREF1058_RS19180 at 6.645 kb on + strand at 6.699 kb on + strand at 6.705 kb on - strand at 6.708 kb on - strand at 6.756 kb on - strand at 6.762 kb on + strand at 6.805 kb on + strand at 6.805 kb on + strand at 6.833 kb on - strand at 6.833 kb on - strand at 6.848 kb on - strand at 6.853 kb on + strand at 6.854 kb on - strand at 6.912 kb on + strand at 6.912 kb on + strand at 6.943 kb on + strand at 6.943 kb on + strand at 6.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 4,602 + HMPREF1058_RS19190 0.28 -0.5 4,604 + HMPREF1058_RS19190 0.28 +0.4 4,836 + HMPREF1058_RS19190 0.46 -2.1 4,981 + HMPREF1058_RS19190 0.57 +0.0 5,188 + HMPREF1058_RS19190 0.73 -0.6 5,188 + HMPREF1058_RS19190 0.73 -0.3 5,189 - HMPREF1058_RS19190 0.73 -0.6 5,233 - HMPREF1058_RS19190 0.76 -0.8 5,356 + HMPREF1058_RS19190 0.86 -0.6 5,356 + HMPREF1058_RS19190 0.86 -0.5 5,356 + HMPREF1058_RS19190 0.86 -0.8 5,360 + HMPREF1058_RS19190 0.86 -0.4 5,361 - HMPREF1058_RS19190 0.86 -1.6 5,361 - HMPREF1058_RS19190 0.86 +0.2 5,435 + -0.9 5,506 - +0.2 5,558 + -2.9 5,579 + -0.0 5,580 - -1.1 5,581 + -0.1 5,581 + -0.3 5,581 + +0.5 5,721 - HMPREF1058_RS19185 0.40 +0.6 5,784 - HMPREF1058_RS19185 0.55 +2.5 5,797 - HMPREF1058_RS19185 0.59 +1.2 5,811 + HMPREF1058_RS19185 0.62 -0.2 5,812 - HMPREF1058_RS19185 0.62 +0.9 6,116 + HMPREF1058_RS19180 0.19 -0.0 6,200 - HMPREF1058_RS19180 0.31 -0.1 6,396 + HMPREF1058_RS19180 0.59 +0.5 6,544 + HMPREF1058_RS19180 0.80 +0.2 6,603 + HMPREF1058_RS19180 0.88 -0.3 6,610 + HMPREF1058_RS19180 0.89 +0.0 6,645 + -1.1 6,699 + -2.5 6,705 - +0.3 6,708 - +0.3 6,756 - +1.8 6,762 + -0.2 6,805 + +0.9 6,805 + -0.2 6,833 - +0.4 6,833 - -0.9 6,848 - -0.4 6,853 + +2.6 6,854 - -0.1 6,912 + -0.2 6,912 + -0.1 6,943 + -0.2 6,943 + +0.1 6,944 - -3.2
Or see this region's nucleotide sequence