Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18795

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18800 and HMPREF1058_RS18795 are separated by 178 nucleotidesHMPREF1058_RS18795 and HMPREF1058_RS18790 are separated by 20 nucleotidesHMPREF1058_RS18790 and HMPREF1058_RS18785 are separated by 17 nucleotides HMPREF1058_RS18800: HMPREF1058_RS18800 - copper-translocating P-type ATPase, at 66,865 to 69,078 _RS18800 HMPREF1058_RS18795: HMPREF1058_RS18795 - DUF3298 and DUF4163 domain-containing protein, at 69,257 to 70,105 _RS18795 HMPREF1058_RS18790: HMPREF1058_RS18790 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 70,126 to 70,755 _RS18790 HMPREF1058_RS18785: HMPREF1058_RS18785 - MBL fold metallo-hydrolase, at 70,773 to 71,411 _RS18785 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 68.267 kb on - strand, within HMPREF1058_RS18800at 68.431 kb on - strand, within HMPREF1058_RS18800at 68.494 kb on + strand, within HMPREF1058_RS18800at 68.494 kb on + strand, within HMPREF1058_RS18800at 68.496 kb on + strand, within HMPREF1058_RS18800at 68.497 kb on - strand, within HMPREF1058_RS18800at 68.513 kb on + strand, within HMPREF1058_RS18800at 68.514 kb on - strand, within HMPREF1058_RS18800at 68.516 kb on + strand, within HMPREF1058_RS18800at 68.517 kb on - strand, within HMPREF1058_RS18800at 68.518 kb on + strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.519 kb on - strand, within HMPREF1058_RS18800at 68.601 kb on + strand, within HMPREF1058_RS18800at 68.616 kb on + strand, within HMPREF1058_RS18800at 68.663 kb on + strand, within HMPREF1058_RS18800at 68.722 kb on + strand, within HMPREF1058_RS18800at 68.791 kb on - strandat 68.863 kb on + strandat 68.934 kb on - strandat 68.998 kb on + strandat 69.090 kb on + strandat 69.090 kb on + strandat 69.094 kb on + strandat 69.095 kb on - strandat 69.098 kb on + strandat 69.199 kb on + strandat 69.199 kb on + strandat 69.329 kb on - strandat 69.421 kb on + strand, within HMPREF1058_RS18795at 69.428 kb on - strand, within HMPREF1058_RS18795at 69.438 kb on - strand, within HMPREF1058_RS18795at 69.439 kb on + strand, within HMPREF1058_RS18795at 69.440 kb on - strand, within HMPREF1058_RS18795at 69.443 kb on + strand, within HMPREF1058_RS18795at 69.499 kb on - strand, within HMPREF1058_RS18795at 69.665 kb on + strand, within HMPREF1058_RS18795at 69.665 kb on + strand, within HMPREF1058_RS18795at 69.709 kb on + strand, within HMPREF1058_RS18795at 69.710 kb on - strand, within HMPREF1058_RS18795at 69.710 kb on - strand, within HMPREF1058_RS18795at 69.740 kb on + strand, within HMPREF1058_RS18795at 69.742 kb on + strand, within HMPREF1058_RS18795at 69.825 kb on + strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.959 kb on - strand, within HMPREF1058_RS18795at 69.964 kb on + strand, within HMPREF1058_RS18795at 69.965 kb on - strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.969 kb on - strand, within HMPREF1058_RS18795at 69.991 kb on - strand, within HMPREF1058_RS18795at 70.025 kb on + strandat 70.025 kb on + strandat 70.032 kb on + strandat 70.040 kb on + strandat 70.093 kb on + strandat 70.094 kb on - strandat 70.098 kb on + strandat 70.099 kb on - strandat 70.103 kb on + strandat 70.117 kb on - strandat 70.122 kb on + strandat 70.122 kb on + strandat 70.123 kb on - strandat 70.123 kb on - strandat 70.134 kb on - strandat 70.202 kb on - strand, within HMPREF1058_RS18790at 70.203 kb on + strand, within HMPREF1058_RS18790at 70.215 kb on + strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.376 kb on + strand, within HMPREF1058_RS18790at 70.377 kb on - strand, within HMPREF1058_RS18790at 70.553 kb on + strand, within HMPREF1058_RS18790at 70.678 kb on + strand, within HMPREF1058_RS18790at 70.678 kb on + strand, within HMPREF1058_RS18790at 70.733 kb on - strandat 70.733 kb on - strandat 70.736 kb on + strandat 70.753 kb on + strandat 70.757 kb on + strandat 70.759 kb on + strandat 70.763 kb on + strandat 70.800 kb on - strandat 70.853 kb on + strand, within HMPREF1058_RS18785at 70.904 kb on + strand, within HMPREF1058_RS18785at 70.996 kb on - strand, within HMPREF1058_RS18785at 71.063 kb on + strand, within HMPREF1058_RS18785at 71.063 kb on + strand, within HMPREF1058_RS18785

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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68,267 - HMPREF1058_RS18800 0.63 -0.8
68,431 - HMPREF1058_RS18800 0.71 -0.2
68,494 + HMPREF1058_RS18800 0.74 -1.2
68,494 + HMPREF1058_RS18800 0.74 -0.5
68,496 + HMPREF1058_RS18800 0.74 -0.0
68,497 - HMPREF1058_RS18800 0.74 +0.7
68,513 + HMPREF1058_RS18800 0.74 +0.3
68,514 - HMPREF1058_RS18800 0.74 -0.8
68,516 + HMPREF1058_RS18800 0.75 -1.5
68,517 - HMPREF1058_RS18800 0.75 -0.3
68,518 + HMPREF1058_RS18800 0.75 -0.8
68,519 - HMPREF1058_RS18800 0.75 +0.8
68,519 - HMPREF1058_RS18800 0.75 -0.2
68,519 - HMPREF1058_RS18800 0.75 -0.7
68,601 + HMPREF1058_RS18800 0.78 +0.6
68,616 + HMPREF1058_RS18800 0.79 -0.6
68,663 + HMPREF1058_RS18800 0.81 -0.1
68,722 + HMPREF1058_RS18800 0.84 -0.5
68,791 - -0.8
68,863 + +1.1
68,934 - -0.4
68,998 + -0.1
69,090 + -0.5
69,090 + +0.4
69,094 + -0.4
69,095 - +2.0
69,098 + -0.1
69,199 + +0.1
69,199 + -2.2
69,329 - -0.2
69,421 + HMPREF1058_RS18795 0.19 -0.3
69,428 - HMPREF1058_RS18795 0.20 +2.3
69,438 - HMPREF1058_RS18795 0.21 +1.0
69,439 + HMPREF1058_RS18795 0.21 +0.2
69,440 - HMPREF1058_RS18795 0.22 +2.3
69,443 + HMPREF1058_RS18795 0.22 -0.4
69,499 - HMPREF1058_RS18795 0.29 +2.0
69,665 + HMPREF1058_RS18795 0.48 -0.4
69,665 + HMPREF1058_RS18795 0.48 -0.8
69,709 + HMPREF1058_RS18795 0.53 +0.7
69,710 - HMPREF1058_RS18795 0.53 +1.0
69,710 - HMPREF1058_RS18795 0.53 +1.2
69,740 + HMPREF1058_RS18795 0.57 +0.8
69,742 + HMPREF1058_RS18795 0.57 -0.6
69,825 + HMPREF1058_RS18795 0.67 -1.8
69,826 - HMPREF1058_RS18795 0.67 +1.2
69,826 - HMPREF1058_RS18795 0.67 +0.9
69,826 - HMPREF1058_RS18795 0.67 +0.3
69,959 - HMPREF1058_RS18795 0.83 +0.8
69,964 + HMPREF1058_RS18795 0.83 -1.0
69,965 - HMPREF1058_RS18795 0.83 +1.2
69,968 + HMPREF1058_RS18795 0.84 -1.9
69,968 + HMPREF1058_RS18795 0.84 -0.3
69,968 + HMPREF1058_RS18795 0.84 +0.4
69,968 + HMPREF1058_RS18795 0.84 -1.5
69,969 - HMPREF1058_RS18795 0.84 +0.8
69,991 - HMPREF1058_RS18795 0.86 +1.4
70,025 + -0.8
70,025 + -0.6
70,032 + +1.1
70,040 + +0.4
70,093 + +0.1
70,094 - +1.7
70,098 + -0.1
70,099 - +1.2
70,103 + +1.3
70,117 - +1.1
70,122 + +0.9
70,122 + +0.6
70,123 - +1.0
70,123 - +1.2
70,134 - +1.5
70,202 - HMPREF1058_RS18790 0.12 +0.4
70,203 + HMPREF1058_RS18790 0.12 +0.3
70,215 + HMPREF1058_RS18790 0.14 +0.9
70,272 - HMPREF1058_RS18790 0.23 +1.6
70,272 - HMPREF1058_RS18790 0.23 +0.5
70,272 - HMPREF1058_RS18790 0.23 +1.3
70,376 + HMPREF1058_RS18790 0.40 -0.2
70,377 - HMPREF1058_RS18790 0.40 +1.8
70,553 + HMPREF1058_RS18790 0.68 +0.3
70,678 + HMPREF1058_RS18790 0.88 +0.3
70,678 + HMPREF1058_RS18790 0.88 +0.1
70,733 - -0.2
70,733 - +1.6
70,736 + -0.9
70,753 + -0.1
70,757 + +0.4
70,759 + +0.3
70,763 + -0.0
70,800 - +0.1
70,853 + HMPREF1058_RS18785 0.13 +1.2
70,904 + HMPREF1058_RS18785 0.21 -0.2
70,996 - HMPREF1058_RS18785 0.35 +0.5
71,063 + HMPREF1058_RS18785 0.45 -0.1
71,063 + HMPREF1058_RS18785 0.45 -0.1

Or see this region's nucleotide sequence