Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18795 and HMPREF1058_RS18790 are separated by 20 nucleotides HMPREF1058_RS18790 and HMPREF1058_RS18785 are separated by 17 nucleotides HMPREF1058_RS18785 and HMPREF1058_RS18780 are separated by 35 nucleotides
HMPREF1058_RS18795: HMPREF1058_RS18795 - DUF3298 and DUF4163 domain-containing protein, at 69,257 to 70,105
_RS18795
HMPREF1058_RS18790: HMPREF1058_RS18790 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 70,126 to 70,755
_RS18790
HMPREF1058_RS18785: HMPREF1058_RS18785 - MBL fold metallo-hydrolase, at 70,773 to 71,411
_RS18785
HMPREF1058_RS18780: HMPREF1058_RS18780 - aminomethyl-transferring glycine dehydrogenase, at 71,447 to 74,296
_RS18780
Position (kb)
70
71
72 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 69.825 kb on + strand, within HMPREF1058_RS18795 at 69.826 kb on - strand, within HMPREF1058_RS18795 at 69.826 kb on - strand, within HMPREF1058_RS18795 at 69.826 kb on - strand, within HMPREF1058_RS18795 at 69.959 kb on - strand, within HMPREF1058_RS18795 at 69.964 kb on + strand, within HMPREF1058_RS18795 at 69.965 kb on - strand, within HMPREF1058_RS18795 at 69.968 kb on + strand, within HMPREF1058_RS18795 at 69.968 kb on + strand, within HMPREF1058_RS18795 at 69.968 kb on + strand, within HMPREF1058_RS18795 at 69.968 kb on + strand, within HMPREF1058_RS18795 at 69.969 kb on - strand, within HMPREF1058_RS18795 at 69.991 kb on - strand, within HMPREF1058_RS18795 at 70.025 kb on + strand at 70.025 kb on + strand at 70.032 kb on + strand at 70.040 kb on + strand at 70.093 kb on + strand at 70.094 kb on - strand at 70.098 kb on + strand at 70.099 kb on - strand at 70.103 kb on + strand at 70.117 kb on - strand at 70.122 kb on + strand at 70.122 kb on + strand at 70.123 kb on - strand at 70.123 kb on - strand at 70.134 kb on - strand at 70.202 kb on - strand, within HMPREF1058_RS18790 at 70.203 kb on + strand, within HMPREF1058_RS18790 at 70.215 kb on + strand, within HMPREF1058_RS18790 at 70.272 kb on - strand, within HMPREF1058_RS18790 at 70.272 kb on - strand, within HMPREF1058_RS18790 at 70.272 kb on - strand, within HMPREF1058_RS18790 at 70.376 kb on + strand, within HMPREF1058_RS18790 at 70.377 kb on - strand, within HMPREF1058_RS18790 at 70.553 kb on + strand, within HMPREF1058_RS18790 at 70.678 kb on + strand, within HMPREF1058_RS18790 at 70.678 kb on + strand, within HMPREF1058_RS18790 at 70.733 kb on - strand at 70.733 kb on - strand at 70.736 kb on + strand at 70.753 kb on + strand at 70.757 kb on + strand at 70.759 kb on + strand at 70.763 kb on + strand at 70.800 kb on - strand at 70.853 kb on + strand, within HMPREF1058_RS18785 at 70.904 kb on + strand, within HMPREF1058_RS18785 at 70.996 kb on - strand, within HMPREF1058_RS18785 at 71.063 kb on + strand, within HMPREF1058_RS18785 at 71.063 kb on + strand, within HMPREF1058_RS18785 at 71.110 kb on - strand, within HMPREF1058_RS18785 at 71.110 kb on - strand, within HMPREF1058_RS18785 at 71.127 kb on - strand, within HMPREF1058_RS18785 at 71.132 kb on + strand, within HMPREF1058_RS18785 at 71.133 kb on - strand, within HMPREF1058_RS18785 at 71.219 kb on + strand, within HMPREF1058_RS18785 at 71.236 kb on + strand, within HMPREF1058_RS18785 at 71.237 kb on - strand at 71.255 kb on - strand, within HMPREF1058_RS18785 at 71.255 kb on - strand, within HMPREF1058_RS18785 at 71.303 kb on + strand, within HMPREF1058_RS18785 at 71.303 kb on + strand, within HMPREF1058_RS18785 at 71.304 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.414 kb on + strand at 71.433 kb on + strand at 71.433 kb on + strand at 71.435 kb on + strand at 71.437 kb on + strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.440 kb on + strand at 71.441 kb on - strand at 71.632 kb on + strand at 71.632 kb on + strand at 71.632 kb on + strand at 71.643 kb on + strand at 71.663 kb on + strand at 71.672 kb on + strand at 71.672 kb on + strand at 71.672 kb on + strand at 71.673 kb on - strand at 71.673 kb on - strand at 71.674 kb on + strand at 71.674 kb on + strand at 71.674 kb on + strand at 71.675 kb on - strand at 71.676 kb on + strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.691 kb on - strand at 71.699 kb on - strand at 71.747 kb on + strand, within HMPREF1058_RS18780 at 71.757 kb on - strand, within HMPREF1058_RS18780 at 71.949 kb on + strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.198 kb on + strand, within HMPREF1058_RS18780 at 72.291 kb on - strand, within HMPREF1058_RS18780 at 72.360 kb on - strand, within HMPREF1058_RS18780 at 72.360 kb on - strand, within HMPREF1058_RS18780 at 72.387 kb on + strand, within HMPREF1058_RS18780 at 72.407 kb on - strand, within HMPREF1058_RS18780
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 69,825 + HMPREF1058_RS18795 0.67 -1.8 69,826 - HMPREF1058_RS18795 0.67 +1.2 69,826 - HMPREF1058_RS18795 0.67 +0.9 69,826 - HMPREF1058_RS18795 0.67 +0.3 69,959 - HMPREF1058_RS18795 0.83 +0.8 69,964 + HMPREF1058_RS18795 0.83 -1.0 69,965 - HMPREF1058_RS18795 0.83 +1.2 69,968 + HMPREF1058_RS18795 0.84 -1.9 69,968 + HMPREF1058_RS18795 0.84 -0.3 69,968 + HMPREF1058_RS18795 0.84 +0.4 69,968 + HMPREF1058_RS18795 0.84 -1.5 69,969 - HMPREF1058_RS18795 0.84 +0.8 69,991 - HMPREF1058_RS18795 0.86 +1.4 70,025 + -0.8 70,025 + -0.6 70,032 + +1.1 70,040 + +0.4 70,093 + +0.1 70,094 - +1.7 70,098 + -0.1 70,099 - +1.2 70,103 + +1.3 70,117 - +1.1 70,122 + +0.9 70,122 + +0.6 70,123 - +1.0 70,123 - +1.2 70,134 - +1.5 70,202 - HMPREF1058_RS18790 0.12 +0.4 70,203 + HMPREF1058_RS18790 0.12 +0.3 70,215 + HMPREF1058_RS18790 0.14 +0.9 70,272 - HMPREF1058_RS18790 0.23 +1.6 70,272 - HMPREF1058_RS18790 0.23 +0.5 70,272 - HMPREF1058_RS18790 0.23 +1.3 70,376 + HMPREF1058_RS18790 0.40 -0.2 70,377 - HMPREF1058_RS18790 0.40 +1.8 70,553 + HMPREF1058_RS18790 0.68 +0.3 70,678 + HMPREF1058_RS18790 0.88 +0.3 70,678 + HMPREF1058_RS18790 0.88 +0.1 70,733 - -0.2 70,733 - +1.6 70,736 + -0.9 70,753 + -0.1 70,757 + +0.4 70,759 + +0.3 70,763 + -0.0 70,800 - +0.1 70,853 + HMPREF1058_RS18785 0.13 +1.2 70,904 + HMPREF1058_RS18785 0.21 -0.2 70,996 - HMPREF1058_RS18785 0.35 +0.5 71,063 + HMPREF1058_RS18785 0.45 -0.1 71,063 + HMPREF1058_RS18785 0.45 -0.1 71,110 - HMPREF1058_RS18785 0.53 +2.5 71,110 - HMPREF1058_RS18785 0.53 -1.8 71,127 - HMPREF1058_RS18785 0.55 +5.6 71,132 + HMPREF1058_RS18785 0.56 -0.2 71,133 - HMPREF1058_RS18785 0.56 +0.3 71,219 + HMPREF1058_RS18785 0.70 -1.0 71,236 + HMPREF1058_RS18785 0.72 +0.2 71,237 - +2.4 71,255 - HMPREF1058_RS18785 0.75 +0.3 71,255 - HMPREF1058_RS18785 0.75 +0.6 71,303 + HMPREF1058_RS18785 0.83 -2.0 71,303 + HMPREF1058_RS18785 0.83 +0.1 71,304 - HMPREF1058_RS18785 0.83 +0.8 71,306 - HMPREF1058_RS18785 0.83 +0.8 71,306 - HMPREF1058_RS18785 0.83 +1.0 71,306 - HMPREF1058_RS18785 0.83 +0.4 71,324 - HMPREF1058_RS18785 0.86 +0.5 71,324 - HMPREF1058_RS18785 0.86 +0.9 71,324 - HMPREF1058_RS18785 0.86 +0.5 71,414 + -0.2 71,433 + -0.3 71,433 + +0.3 71,435 + +0.3 71,437 + +1.4 71,438 - +1.5 71,438 - +1.3 71,438 - +0.3 71,438 - +0.1 71,440 + +2.0 71,441 - +1.0 71,632 + +0.4 71,632 + -0.5 71,632 + +1.1 71,643 + +0.4 71,663 + +0.1 71,672 + -0.5 71,672 + -0.4 71,672 + +0.6 71,673 - +0.6 71,673 - +0.7 71,674 + +0.5 71,674 + +2.6 71,674 + -0.7 71,675 - +1.5 71,676 + +1.2 71,677 - +1.3 71,677 - +3.5 71,677 - +1.0 71,677 - +0.0 71,677 - +0.9 71,691 - +0.4 71,699 - +1.1 71,747 + HMPREF1058_RS18780 0.11 +1.3 71,757 - HMPREF1058_RS18780 0.11 +0.3 71,949 + HMPREF1058_RS18780 0.18 +1.4 72,158 - HMPREF1058_RS18780 0.25 -0.4 72,158 - HMPREF1058_RS18780 0.25 -0.2 72,158 - HMPREF1058_RS18780 0.25 +0.7 72,198 + HMPREF1058_RS18780 0.26 +0.0 72,291 - HMPREF1058_RS18780 0.30 -0.2 72,360 - HMPREF1058_RS18780 0.32 +2.0 72,360 - HMPREF1058_RS18780 0.32 +0.5 72,387 + HMPREF1058_RS18780 0.33 -0.5 72,407 - HMPREF1058_RS18780 0.34 +0.0
Or see this region's nucleotide sequence