Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18785

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
69,825	+		HMPREF1058_RS18795	0.67	-1.8
69,826	-		HMPREF1058_RS18795	0.67	+1.2
69,826	-		HMPREF1058_RS18795	0.67	+0.9
69,826	-		HMPREF1058_RS18795	0.67	+0.3
69,959	-		HMPREF1058_RS18795	0.83	+0.8
69,964	+		HMPREF1058_RS18795	0.83	-1.0
69,965	-		HMPREF1058_RS18795	0.83	+1.2
69,968	+		HMPREF1058_RS18795	0.84	-1.9
69,968	+		HMPREF1058_RS18795	0.84	-0.3
69,968	+		HMPREF1058_RS18795	0.84	+0.4
69,968	+		HMPREF1058_RS18795	0.84	-1.5
69,969	-		HMPREF1058_RS18795	0.84	+0.8
69,991	-		HMPREF1058_RS18795	0.86	+1.4
70,025	+				-0.8
70,025	+				-0.6
70,032	+				+1.1
70,040	+				+0.4
70,093	+				+0.1
70,094	-				+1.7
70,098	+				-0.1
70,099	-				+1.2
70,103	+				+1.3
70,117	-				+1.1
70,122	+				+0.9
70,122	+				+0.6
70,123	-				+1.0
70,123	-				+1.2
70,134	-				+1.5
70,202	-		HMPREF1058_RS18790	0.12	+0.4
70,203	+		HMPREF1058_RS18790	0.12	+0.3
70,215	+		HMPREF1058_RS18790	0.14	+0.9
70,272	-		HMPREF1058_RS18790	0.23	+1.6
70,272	-		HMPREF1058_RS18790	0.23	+0.5
70,272	-		HMPREF1058_RS18790	0.23	+1.3
70,376	+		HMPREF1058_RS18790	0.40	-0.2
70,377	-		HMPREF1058_RS18790	0.40	+1.8
70,553	+		HMPREF1058_RS18790	0.68	+0.3
70,678	+		HMPREF1058_RS18790	0.88	+0.3
70,678	+		HMPREF1058_RS18790	0.88	+0.1
70,733	-				-0.2
70,733	-				+1.6
70,736	+				-0.9
70,753	+				-0.1
70,757	+				+0.4
70,759	+				+0.3
70,763	+				-0.0
70,800	-				+0.1
70,853	+		HMPREF1058_RS18785	0.13	+1.2
70,904	+		HMPREF1058_RS18785	0.21	-0.2
70,996	-		HMPREF1058_RS18785	0.35	+0.5
71,063	+		HMPREF1058_RS18785	0.45	-0.1
71,063	+		HMPREF1058_RS18785	0.45	-0.1
71,110	-		HMPREF1058_RS18785	0.53	+2.5
71,110	-		HMPREF1058_RS18785	0.53	-1.8
71,127	-		HMPREF1058_RS18785	0.55	+5.6
71,132	+		HMPREF1058_RS18785	0.56	-0.2
71,133	-		HMPREF1058_RS18785	0.56	+0.3
71,219	+		HMPREF1058_RS18785	0.70	-1.0
71,236	+		HMPREF1058_RS18785	0.72	+0.2
71,237	-				+2.4
71,255	-		HMPREF1058_RS18785	0.75	+0.3
71,255	-		HMPREF1058_RS18785	0.75	+0.6
71,303	+		HMPREF1058_RS18785	0.83	-2.0
71,303	+		HMPREF1058_RS18785	0.83	+0.1
71,304	-		HMPREF1058_RS18785	0.83	+0.8
71,306	-		HMPREF1058_RS18785	0.83	+0.8
71,306	-		HMPREF1058_RS18785	0.83	+1.0
71,306	-		HMPREF1058_RS18785	0.83	+0.4
71,324	-		HMPREF1058_RS18785	0.86	+0.5
71,324	-		HMPREF1058_RS18785	0.86	+0.9
71,324	-		HMPREF1058_RS18785	0.86	+0.5
71,414	+				-0.2
71,433	+				-0.3
71,433	+				+0.3
71,435	+				+0.3
71,437	+				+1.4
71,438	-				+1.5
71,438	-				+1.3
71,438	-				+0.3
71,438	-				+0.1
71,440	+				+2.0
71,441	-				+1.0
71,632	+				+0.4
71,632	+				-0.5
71,632	+				+1.1
71,643	+				+0.4
71,663	+				+0.1
71,672	+				-0.5
71,672	+				-0.4
71,672	+				+0.6
71,673	-				+0.6
71,673	-				+0.7
71,674	+				+0.5
71,674	+				+2.6
71,674	+				-0.7
71,675	-				+1.5
71,676	+				+1.2
71,677	-				+1.3
71,677	-				+3.5
71,677	-				+1.0
71,677	-				+0.0
71,677	-				+0.9
71,691	-				+0.4
71,699	-				+1.1
71,747	+		HMPREF1058_RS18780	0.11	+1.3
71,757	-		HMPREF1058_RS18780	0.11	+0.3
71,949	+		HMPREF1058_RS18780	0.18	+1.4
72,158	-		HMPREF1058_RS18780	0.25	-0.4
72,158	-		HMPREF1058_RS18780	0.25	-0.2
72,158	-		HMPREF1058_RS18780	0.25	+0.7
72,198	+		HMPREF1058_RS18780	0.26	+0.0
72,291	-		HMPREF1058_RS18780	0.30	-0.2
72,360	-		HMPREF1058_RS18780	0.32	+2.0
72,360	-		HMPREF1058_RS18780	0.32	+0.5
72,387	+		HMPREF1058_RS18780	0.33	-0.5
72,407	-		HMPREF1058_RS18780	0.34	+0.0