Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18785

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18795 and HMPREF1058_RS18790 are separated by 20 nucleotidesHMPREF1058_RS18790 and HMPREF1058_RS18785 are separated by 17 nucleotidesHMPREF1058_RS18785 and HMPREF1058_RS18780 are separated by 35 nucleotides HMPREF1058_RS18795: HMPREF1058_RS18795 - DUF3298 and DUF4163 domain-containing protein, at 69,257 to 70,105 _RS18795 HMPREF1058_RS18790: HMPREF1058_RS18790 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 70,126 to 70,755 _RS18790 HMPREF1058_RS18785: HMPREF1058_RS18785 - MBL fold metallo-hydrolase, at 70,773 to 71,411 _RS18785 HMPREF1058_RS18780: HMPREF1058_RS18780 - aminomethyl-transferring glycine dehydrogenase, at 71,447 to 74,296 _RS18780 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 69.825 kb on + strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.826 kb on - strand, within HMPREF1058_RS18795at 69.959 kb on - strand, within HMPREF1058_RS18795at 69.964 kb on + strand, within HMPREF1058_RS18795at 69.965 kb on - strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.968 kb on + strand, within HMPREF1058_RS18795at 69.969 kb on - strand, within HMPREF1058_RS18795at 69.991 kb on - strand, within HMPREF1058_RS18795at 70.025 kb on + strandat 70.025 kb on + strandat 70.032 kb on + strandat 70.040 kb on + strandat 70.093 kb on + strandat 70.094 kb on - strandat 70.098 kb on + strandat 70.099 kb on - strandat 70.103 kb on + strandat 70.117 kb on - strandat 70.122 kb on + strandat 70.122 kb on + strandat 70.123 kb on - strandat 70.123 kb on - strandat 70.134 kb on - strandat 70.202 kb on - strand, within HMPREF1058_RS18790at 70.203 kb on + strand, within HMPREF1058_RS18790at 70.215 kb on + strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.272 kb on - strand, within HMPREF1058_RS18790at 70.376 kb on + strand, within HMPREF1058_RS18790at 70.377 kb on - strand, within HMPREF1058_RS18790at 70.553 kb on + strand, within HMPREF1058_RS18790at 70.678 kb on + strand, within HMPREF1058_RS18790at 70.678 kb on + strand, within HMPREF1058_RS18790at 70.733 kb on - strandat 70.733 kb on - strandat 70.736 kb on + strandat 70.753 kb on + strandat 70.757 kb on + strandat 70.759 kb on + strandat 70.763 kb on + strandat 70.800 kb on - strandat 70.853 kb on + strand, within HMPREF1058_RS18785at 70.904 kb on + strand, within HMPREF1058_RS18785at 70.996 kb on - strand, within HMPREF1058_RS18785at 71.063 kb on + strand, within HMPREF1058_RS18785at 71.063 kb on + strand, within HMPREF1058_RS18785at 71.110 kb on - strand, within HMPREF1058_RS18785at 71.110 kb on - strand, within HMPREF1058_RS18785at 71.127 kb on - strand, within HMPREF1058_RS18785at 71.132 kb on + strand, within HMPREF1058_RS18785at 71.133 kb on - strand, within HMPREF1058_RS18785at 71.219 kb on + strand, within HMPREF1058_RS18785at 71.236 kb on + strand, within HMPREF1058_RS18785at 71.237 kb on - strandat 71.255 kb on - strand, within HMPREF1058_RS18785at 71.255 kb on - strand, within HMPREF1058_RS18785at 71.303 kb on + strand, within HMPREF1058_RS18785at 71.303 kb on + strand, within HMPREF1058_RS18785at 71.304 kb on - strand, within HMPREF1058_RS18785at 71.306 kb on - strand, within HMPREF1058_RS18785at 71.306 kb on - strand, within HMPREF1058_RS18785at 71.306 kb on - strand, within HMPREF1058_RS18785at 71.324 kb on - strand, within HMPREF1058_RS18785at 71.324 kb on - strand, within HMPREF1058_RS18785at 71.324 kb on - strand, within HMPREF1058_RS18785at 71.414 kb on + strandat 71.433 kb on + strandat 71.433 kb on + strandat 71.435 kb on + strandat 71.437 kb on + strandat 71.438 kb on - strandat 71.438 kb on - strandat 71.438 kb on - strandat 71.438 kb on - strandat 71.440 kb on + strandat 71.441 kb on - strandat 71.632 kb on + strandat 71.632 kb on + strandat 71.632 kb on + strandat 71.643 kb on + strandat 71.663 kb on + strandat 71.672 kb on + strandat 71.672 kb on + strandat 71.672 kb on + strandat 71.673 kb on - strandat 71.673 kb on - strandat 71.674 kb on + strandat 71.674 kb on + strandat 71.674 kb on + strandat 71.675 kb on - strandat 71.676 kb on + strandat 71.677 kb on - strandat 71.677 kb on - strandat 71.677 kb on - strandat 71.677 kb on - strandat 71.677 kb on - strandat 71.691 kb on - strandat 71.699 kb on - strandat 71.747 kb on + strand, within HMPREF1058_RS18780at 71.757 kb on - strand, within HMPREF1058_RS18780at 71.949 kb on + strand, within HMPREF1058_RS18780at 72.158 kb on - strand, within HMPREF1058_RS18780at 72.158 kb on - strand, within HMPREF1058_RS18780at 72.158 kb on - strand, within HMPREF1058_RS18780at 72.198 kb on + strand, within HMPREF1058_RS18780at 72.291 kb on - strand, within HMPREF1058_RS18780at 72.360 kb on - strand, within HMPREF1058_RS18780at 72.360 kb on - strand, within HMPREF1058_RS18780at 72.387 kb on + strand, within HMPREF1058_RS18780at 72.407 kb on - strand, within HMPREF1058_RS18780

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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69,825 + HMPREF1058_RS18795 0.67 -1.8
69,826 - HMPREF1058_RS18795 0.67 +1.2
69,826 - HMPREF1058_RS18795 0.67 +0.9
69,826 - HMPREF1058_RS18795 0.67 +0.3
69,959 - HMPREF1058_RS18795 0.83 +0.8
69,964 + HMPREF1058_RS18795 0.83 -1.0
69,965 - HMPREF1058_RS18795 0.83 +1.2
69,968 + HMPREF1058_RS18795 0.84 -1.9
69,968 + HMPREF1058_RS18795 0.84 -0.3
69,968 + HMPREF1058_RS18795 0.84 +0.4
69,968 + HMPREF1058_RS18795 0.84 -1.5
69,969 - HMPREF1058_RS18795 0.84 +0.8
69,991 - HMPREF1058_RS18795 0.86 +1.4
70,025 + -0.8
70,025 + -0.6
70,032 + +1.1
70,040 + +0.4
70,093 + +0.1
70,094 - +1.7
70,098 + -0.1
70,099 - +1.2
70,103 + +1.3
70,117 - +1.1
70,122 + +0.9
70,122 + +0.6
70,123 - +1.0
70,123 - +1.2
70,134 - +1.5
70,202 - HMPREF1058_RS18790 0.12 +0.4
70,203 + HMPREF1058_RS18790 0.12 +0.3
70,215 + HMPREF1058_RS18790 0.14 +0.9
70,272 - HMPREF1058_RS18790 0.23 +1.6
70,272 - HMPREF1058_RS18790 0.23 +0.5
70,272 - HMPREF1058_RS18790 0.23 +1.3
70,376 + HMPREF1058_RS18790 0.40 -0.2
70,377 - HMPREF1058_RS18790 0.40 +1.8
70,553 + HMPREF1058_RS18790 0.68 +0.3
70,678 + HMPREF1058_RS18790 0.88 +0.3
70,678 + HMPREF1058_RS18790 0.88 +0.1
70,733 - -0.2
70,733 - +1.6
70,736 + -0.9
70,753 + -0.1
70,757 + +0.4
70,759 + +0.3
70,763 + -0.0
70,800 - +0.1
70,853 + HMPREF1058_RS18785 0.13 +1.2
70,904 + HMPREF1058_RS18785 0.21 -0.2
70,996 - HMPREF1058_RS18785 0.35 +0.5
71,063 + HMPREF1058_RS18785 0.45 -0.1
71,063 + HMPREF1058_RS18785 0.45 -0.1
71,110 - HMPREF1058_RS18785 0.53 +2.5
71,110 - HMPREF1058_RS18785 0.53 -1.8
71,127 - HMPREF1058_RS18785 0.55 +5.6
71,132 + HMPREF1058_RS18785 0.56 -0.2
71,133 - HMPREF1058_RS18785 0.56 +0.3
71,219 + HMPREF1058_RS18785 0.70 -1.0
71,236 + HMPREF1058_RS18785 0.72 +0.2
71,237 - +2.4
71,255 - HMPREF1058_RS18785 0.75 +0.3
71,255 - HMPREF1058_RS18785 0.75 +0.6
71,303 + HMPREF1058_RS18785 0.83 -2.0
71,303 + HMPREF1058_RS18785 0.83 +0.1
71,304 - HMPREF1058_RS18785 0.83 +0.8
71,306 - HMPREF1058_RS18785 0.83 +0.8
71,306 - HMPREF1058_RS18785 0.83 +1.0
71,306 - HMPREF1058_RS18785 0.83 +0.4
71,324 - HMPREF1058_RS18785 0.86 +0.5
71,324 - HMPREF1058_RS18785 0.86 +0.9
71,324 - HMPREF1058_RS18785 0.86 +0.5
71,414 + -0.2
71,433 + -0.3
71,433 + +0.3
71,435 + +0.3
71,437 + +1.4
71,438 - +1.5
71,438 - +1.3
71,438 - +0.3
71,438 - +0.1
71,440 + +2.0
71,441 - +1.0
71,632 + +0.4
71,632 + -0.5
71,632 + +1.1
71,643 + +0.4
71,663 + +0.1
71,672 + -0.5
71,672 + -0.4
71,672 + +0.6
71,673 - +0.6
71,673 - +0.7
71,674 + +0.5
71,674 + +2.6
71,674 + -0.7
71,675 - +1.5
71,676 + +1.2
71,677 - +1.3
71,677 - +3.5
71,677 - +1.0
71,677 - +0.0
71,677 - +0.9
71,691 - +0.4
71,699 - +1.1
71,747 + HMPREF1058_RS18780 0.11 +1.3
71,757 - HMPREF1058_RS18780 0.11 +0.3
71,949 + HMPREF1058_RS18780 0.18 +1.4
72,158 - HMPREF1058_RS18780 0.25 -0.4
72,158 - HMPREF1058_RS18780 0.25 -0.2
72,158 - HMPREF1058_RS18780 0.25 +0.7
72,198 + HMPREF1058_RS18780 0.26 +0.0
72,291 - HMPREF1058_RS18780 0.30 -0.2
72,360 - HMPREF1058_RS18780 0.32 +2.0
72,360 - HMPREF1058_RS18780 0.32 +0.5
72,387 + HMPREF1058_RS18780 0.33 -0.5
72,407 - HMPREF1058_RS18780 0.34 +0.0

Or see this region's nucleotide sequence