Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18790 and HMPREF1058_RS18785 are separated by 17 nucleotides HMPREF1058_RS18785 and HMPREF1058_RS18780 are separated by 35 nucleotides HMPREF1058_RS18780 and HMPREF1058_RS18775 are separated by 283 nucleotides
HMPREF1058_RS18790: HMPREF1058_RS18790 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 70,126 to 70,755
_RS18790
HMPREF1058_RS18785: HMPREF1058_RS18785 - MBL fold metallo-hydrolase, at 70,773 to 71,411
_RS18785
HMPREF1058_RS18780: HMPREF1058_RS18780 - aminomethyl-transferring glycine dehydrogenase, at 71,447 to 74,296
_RS18780
HMPREF1058_RS18775: HMPREF1058_RS18775 - S9 family peptidase, at 74,580 to 77,294
_RS18775
Position (kb) 71
72
73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 70.553 kb on + strand, within HMPREF1058_RS18790 at 70.678 kb on + strand, within HMPREF1058_RS18790 at 70.678 kb on + strand, within HMPREF1058_RS18790 at 70.733 kb on - strand at 70.733 kb on - strand at 70.736 kb on + strand at 70.753 kb on + strand at 70.757 kb on + strand at 70.759 kb on + strand at 70.763 kb on + strand at 70.800 kb on - strand at 70.853 kb on + strand, within HMPREF1058_RS18785 at 70.904 kb on + strand, within HMPREF1058_RS18785 at 70.996 kb on - strand, within HMPREF1058_RS18785 at 71.063 kb on + strand, within HMPREF1058_RS18785 at 71.063 kb on + strand, within HMPREF1058_RS18785 at 71.110 kb on - strand, within HMPREF1058_RS18785 at 71.110 kb on - strand, within HMPREF1058_RS18785 at 71.127 kb on - strand, within HMPREF1058_RS18785 at 71.132 kb on + strand, within HMPREF1058_RS18785 at 71.133 kb on - strand, within HMPREF1058_RS18785 at 71.219 kb on + strand, within HMPREF1058_RS18785 at 71.236 kb on + strand, within HMPREF1058_RS18785 at 71.237 kb on - strand at 71.255 kb on - strand, within HMPREF1058_RS18785 at 71.255 kb on - strand, within HMPREF1058_RS18785 at 71.303 kb on + strand, within HMPREF1058_RS18785 at 71.303 kb on + strand, within HMPREF1058_RS18785 at 71.304 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.306 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.324 kb on - strand, within HMPREF1058_RS18785 at 71.414 kb on + strand at 71.433 kb on + strand at 71.433 kb on + strand at 71.435 kb on + strand at 71.437 kb on + strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.438 kb on - strand at 71.440 kb on + strand at 71.441 kb on - strand at 71.632 kb on + strand at 71.632 kb on + strand at 71.632 kb on + strand at 71.643 kb on + strand at 71.663 kb on + strand at 71.672 kb on + strand at 71.672 kb on + strand at 71.672 kb on + strand at 71.673 kb on - strand at 71.673 kb on - strand at 71.674 kb on + strand at 71.674 kb on + strand at 71.674 kb on + strand at 71.675 kb on - strand at 71.676 kb on + strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.677 kb on - strand at 71.691 kb on - strand at 71.699 kb on - strand at 71.747 kb on + strand, within HMPREF1058_RS18780 at 71.757 kb on - strand, within HMPREF1058_RS18780 at 71.949 kb on + strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.158 kb on - strand, within HMPREF1058_RS18780 at 72.198 kb on + strand, within HMPREF1058_RS18780 at 72.291 kb on - strand, within HMPREF1058_RS18780 at 72.360 kb on - strand, within HMPREF1058_RS18780 at 72.360 kb on - strand, within HMPREF1058_RS18780 at 72.387 kb on + strand, within HMPREF1058_RS18780 at 72.407 kb on - strand, within HMPREF1058_RS18780 at 72.530 kb on - strand, within HMPREF1058_RS18780 at 72.665 kb on - strand, within HMPREF1058_RS18780 at 72.683 kb on + strand, within HMPREF1058_RS18780 at 72.684 kb on - strand, within HMPREF1058_RS18780 at 72.879 kb on - strand, within HMPREF1058_RS18780 at 72.879 kb on - strand, within HMPREF1058_RS18780 at 72.906 kb on - strand, within HMPREF1058_RS18780 at 72.926 kb on - strand, within HMPREF1058_RS18780 at 73.032 kb on + strand, within HMPREF1058_RS18780 at 73.033 kb on - strand, within HMPREF1058_RS18780 at 73.163 kb on + strand, within HMPREF1058_RS18780 at 73.163 kb on + strand, within HMPREF1058_RS18780 at 73.165 kb on + strand, within HMPREF1058_RS18780 at 73.231 kb on - strand, within HMPREF1058_RS18780 at 73.318 kb on + strand, within HMPREF1058_RS18780 at 73.392 kb on - strand, within HMPREF1058_RS18780 at 73.408 kb on + strand, within HMPREF1058_RS18780 at 73.536 kb on + strand, within HMPREF1058_RS18780 at 73.536 kb on + strand, within HMPREF1058_RS18780 at 73.537 kb on - strand, within HMPREF1058_RS18780 at 73.537 kb on - strand, within HMPREF1058_RS18780 at 73.712 kb on - strand, within HMPREF1058_RS18780 at 73.719 kb on - strand, within HMPREF1058_RS18780 at 73.726 kb on + strand, within HMPREF1058_RS18780 at 73.726 kb on + strand, within HMPREF1058_RS18780 at 73.791 kb on - strand at 73.827 kb on + strand, within HMPREF1058_RS18780 at 73.827 kb on + strand, within HMPREF1058_RS18780 at 73.827 kb on + strand, within HMPREF1058_RS18780 at 73.827 kb on + strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 73.828 kb on - strand, within HMPREF1058_RS18780 at 74.106 kb on + strand at 74.245 kb on + strand at 74.245 kb on + strand at 74.250 kb on + strand at 74.250 kb on + strand at 74.250 kb on + strand at 74.308 kb on - strand at 74.351 kb on - strand at 74.517 kb on + strand at 74.518 kb on - strand at 74.518 kb on - strand at 74.530 kb on + strand at 74.575 kb on + strand at 74.575 kb on + strand at 74.578 kb on + strand at 74.596 kb on + strand at 74.681 kb on + strand at 74.741 kb on - strand at 74.789 kb on - strand at 74.794 kb on - strand at 74.832 kb on - strand at 74.841 kb on + strand at 74.841 kb on + strand at 74.857 kb on - strand, within HMPREF1058_RS18775 at 74.985 kb on - strand, within HMPREF1058_RS18775 at 75.005 kb on + strand, within HMPREF1058_RS18775 at 75.006 kb on - strand, within HMPREF1058_RS18775 at 75.089 kb on + strand, within HMPREF1058_RS18775 at 75.168 kb on - strand, within HMPREF1058_RS18775 at 75.170 kb on - strand, within HMPREF1058_RS18775 at 75.195 kb on + strand at 75.204 kb on + strand, within HMPREF1058_RS18775 at 75.204 kb on + strand, within HMPREF1058_RS18775 at 75.205 kb on - strand, within HMPREF1058_RS18775 at 75.242 kb on - strand, within HMPREF1058_RS18775
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 70,553 + HMPREF1058_RS18790 0.68 +0.3 70,678 + HMPREF1058_RS18790 0.88 +0.3 70,678 + HMPREF1058_RS18790 0.88 +0.1 70,733 - -0.2 70,733 - +1.6 70,736 + -0.9 70,753 + -0.1 70,757 + +0.4 70,759 + +0.3 70,763 + -0.0 70,800 - +0.1 70,853 + HMPREF1058_RS18785 0.13 +1.2 70,904 + HMPREF1058_RS18785 0.21 -0.2 70,996 - HMPREF1058_RS18785 0.35 +0.5 71,063 + HMPREF1058_RS18785 0.45 -0.1 71,063 + HMPREF1058_RS18785 0.45 -0.1 71,110 - HMPREF1058_RS18785 0.53 +2.5 71,110 - HMPREF1058_RS18785 0.53 -1.8 71,127 - HMPREF1058_RS18785 0.55 +5.6 71,132 + HMPREF1058_RS18785 0.56 -0.2 71,133 - HMPREF1058_RS18785 0.56 +0.3 71,219 + HMPREF1058_RS18785 0.70 -1.0 71,236 + HMPREF1058_RS18785 0.72 +0.2 71,237 - +2.4 71,255 - HMPREF1058_RS18785 0.75 +0.3 71,255 - HMPREF1058_RS18785 0.75 +0.6 71,303 + HMPREF1058_RS18785 0.83 -2.0 71,303 + HMPREF1058_RS18785 0.83 +0.1 71,304 - HMPREF1058_RS18785 0.83 +0.8 71,306 - HMPREF1058_RS18785 0.83 +0.8 71,306 - HMPREF1058_RS18785 0.83 +1.0 71,306 - HMPREF1058_RS18785 0.83 +0.4 71,324 - HMPREF1058_RS18785 0.86 +0.5 71,324 - HMPREF1058_RS18785 0.86 +0.9 71,324 - HMPREF1058_RS18785 0.86 +0.5 71,414 + -0.2 71,433 + -0.3 71,433 + +0.3 71,435 + +0.3 71,437 + +1.4 71,438 - +1.5 71,438 - +1.3 71,438 - +0.3 71,438 - +0.1 71,440 + +2.0 71,441 - +1.0 71,632 + +0.4 71,632 + -0.5 71,632 + +1.1 71,643 + +0.4 71,663 + +0.1 71,672 + -0.5 71,672 + -0.4 71,672 + +0.6 71,673 - +0.6 71,673 - +0.7 71,674 + +0.5 71,674 + +2.6 71,674 + -0.7 71,675 - +1.5 71,676 + +1.2 71,677 - +1.3 71,677 - +3.5 71,677 - +1.0 71,677 - +0.0 71,677 - +0.9 71,691 - +0.4 71,699 - +1.1 71,747 + HMPREF1058_RS18780 0.11 +1.3 71,757 - HMPREF1058_RS18780 0.11 +0.3 71,949 + HMPREF1058_RS18780 0.18 +1.4 72,158 - HMPREF1058_RS18780 0.25 -0.4 72,158 - HMPREF1058_RS18780 0.25 -0.2 72,158 - HMPREF1058_RS18780 0.25 +0.7 72,198 + HMPREF1058_RS18780 0.26 +0.0 72,291 - HMPREF1058_RS18780 0.30 -0.2 72,360 - HMPREF1058_RS18780 0.32 +2.0 72,360 - HMPREF1058_RS18780 0.32 +0.5 72,387 + HMPREF1058_RS18780 0.33 -0.5 72,407 - HMPREF1058_RS18780 0.34 +0.0 72,530 - HMPREF1058_RS18780 0.38 -0.6 72,665 - HMPREF1058_RS18780 0.43 -0.2 72,683 + HMPREF1058_RS18780 0.43 +0.1 72,684 - HMPREF1058_RS18780 0.43 +1.1 72,879 - HMPREF1058_RS18780 0.50 -1.4 72,879 - HMPREF1058_RS18780 0.50 +0.8 72,906 - HMPREF1058_RS18780 0.51 +2.0 72,926 - HMPREF1058_RS18780 0.52 +0.0 73,032 + HMPREF1058_RS18780 0.56 -0.7 73,033 - HMPREF1058_RS18780 0.56 +1.3 73,163 + HMPREF1058_RS18780 0.60 +0.4 73,163 + HMPREF1058_RS18780 0.60 +1.6 73,165 + HMPREF1058_RS18780 0.60 +0.2 73,231 - HMPREF1058_RS18780 0.63 +1.4 73,318 + HMPREF1058_RS18780 0.66 +0.8 73,392 - HMPREF1058_RS18780 0.68 -0.3 73,408 + HMPREF1058_RS18780 0.69 +1.0 73,536 + HMPREF1058_RS18780 0.73 +0.3 73,536 + HMPREF1058_RS18780 0.73 -0.3 73,537 - HMPREF1058_RS18780 0.73 -0.6 73,537 - HMPREF1058_RS18780 0.73 +0.5 73,712 - HMPREF1058_RS18780 0.79 +0.5 73,719 - HMPREF1058_RS18780 0.80 +0.7 73,726 + HMPREF1058_RS18780 0.80 +0.9 73,726 + HMPREF1058_RS18780 0.80 +1.1 73,791 - -1.0 73,827 + HMPREF1058_RS18780 0.84 +1.1 73,827 + HMPREF1058_RS18780 0.84 +2.2 73,827 + HMPREF1058_RS18780 0.84 +2.0 73,827 + HMPREF1058_RS18780 0.84 +0.3 73,828 - HMPREF1058_RS18780 0.84 +0.7 73,828 - HMPREF1058_RS18780 0.84 +1.3 73,828 - HMPREF1058_RS18780 0.84 +1.2 73,828 - HMPREF1058_RS18780 0.84 +0.2 73,828 - HMPREF1058_RS18780 0.84 +1.2 73,828 - HMPREF1058_RS18780 0.84 +0.8 74,106 + +4.1 74,245 + +2.0 74,245 + +0.5 74,250 + -0.6 74,250 + +2.3 74,250 + +1.8 74,308 - +0.5 74,351 - -0.0 74,517 + +0.1 74,518 - +0.4 74,518 - +0.7 74,530 + -0.8 74,575 + +0.3 74,575 + -1.7 74,578 + -0.2 74,596 + +1.9 74,681 + +1.2 74,741 - +0.0 74,789 - +0.9 74,794 - +1.5 74,832 - +1.1 74,841 + +0.1 74,841 + -0.4 74,857 - HMPREF1058_RS18775 0.10 +1.3 74,985 - HMPREF1058_RS18775 0.15 +0.5 75,005 + HMPREF1058_RS18775 0.16 -0.3 75,006 - HMPREF1058_RS18775 0.16 +0.7 75,089 + HMPREF1058_RS18775 0.19 +0.2 75,168 - HMPREF1058_RS18775 0.22 +1.4 75,170 - HMPREF1058_RS18775 0.22 +0.6 75,195 + +0.0 75,204 + HMPREF1058_RS18775 0.23 +1.0 75,204 + HMPREF1058_RS18775 0.23 +1.1 75,205 - HMPREF1058_RS18775 0.23 +1.5 75,242 - HMPREF1058_RS18775 0.24 +1.1
Or see this region's nucleotide sequence