Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18560

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18570 and HMPREF1058_RS18565 overlap by 4 nucleotidesHMPREF1058_RS18565 and HMPREF1058_RS18560 are separated by 20 nucleotidesHMPREF1058_RS18560 and HMPREF1058_RS18555 are separated by 78 nucleotides HMPREF1058_RS18570: HMPREF1058_RS18570 - GNAT family N-acetyltransferase, at 125,663 to 126,199 _RS18570 HMPREF1058_RS18565: HMPREF1058_RS18565 - hypothetical protein, at 126,196 to 126,666 _RS18565 HMPREF1058_RS18560: HMPREF1058_RS18560 - recombination protein RecR, at 126,687 to 127,304 _RS18560 HMPREF1058_RS18555: HMPREF1058_RS18555 - sodium:solute symporter, at 127,383 to 128,864 _RS18555 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 125.720 kb on - strand, within HMPREF1058_RS18570at 125.806 kb on - strand, within HMPREF1058_RS18570at 125.806 kb on - strand, within HMPREF1058_RS18570at 125.952 kb on - strand, within HMPREF1058_RS18570at 126.041 kb on + strandat 126.042 kb on - strand, within HMPREF1058_RS18570at 126.045 kb on + strand, within HMPREF1058_RS18570at 126.046 kb on - strand, within HMPREF1058_RS18570at 126.382 kb on + strand, within HMPREF1058_RS18565at 126.525 kb on - strand, within HMPREF1058_RS18565at 126.525 kb on - strand, within HMPREF1058_RS18565at 126.620 kb on + strandat 126.620 kb on + strandat 126.621 kb on - strandat 126.833 kb on - strand, within HMPREF1058_RS18560at 126.925 kb on - strand, within HMPREF1058_RS18560at 126.945 kb on + strand, within HMPREF1058_RS18560at 126.985 kb on + strand, within HMPREF1058_RS18560at 127.035 kb on - strand, within HMPREF1058_RS18560at 127.085 kb on + strand, within HMPREF1058_RS18560at 127.086 kb on - strand, within HMPREF1058_RS18560at 127.107 kb on + strand, within HMPREF1058_RS18560at 127.109 kb on + strand, within HMPREF1058_RS18560at 127.110 kb on - strand, within HMPREF1058_RS18560at 127.125 kb on - strandat 127.163 kb on + strand, within HMPREF1058_RS18560at 127.319 kb on + strandat 127.322 kb on - strandat 127.359 kb on + strandat 127.359 kb on + strandat 127.397 kb on + strandat 127.411 kb on + strandat 127.412 kb on - strandat 127.419 kb on + strandat 127.419 kb on + strandat 127.430 kb on - strandat 127.509 kb on + strandat 127.553 kb on + strand, within HMPREF1058_RS18555at 127.579 kb on + strand, within HMPREF1058_RS18555at 127.600 kb on - strand, within HMPREF1058_RS18555at 127.600 kb on - strand, within HMPREF1058_RS18555at 127.692 kb on + strand, within HMPREF1058_RS18555at 127.728 kb on + strand, within HMPREF1058_RS18555at 127.815 kb on + strand, within HMPREF1058_RS18555at 127.819 kb on + strand, within HMPREF1058_RS18555at 127.963 kb on + strand, within HMPREF1058_RS18555at 127.966 kb on + strand, within HMPREF1058_RS18555at 127.966 kb on + strand, within HMPREF1058_RS18555at 127.971 kb on + strand, within HMPREF1058_RS18555at 127.972 kb on - strand, within HMPREF1058_RS18555at 128.199 kb on + strandat 128.200 kb on - strand, within HMPREF1058_RS18555at 128.200 kb on - strand, within HMPREF1058_RS18555at 128.200 kb on - strand, within HMPREF1058_RS18555

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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125,720 - HMPREF1058_RS18570 0.11 -0.2
125,806 - HMPREF1058_RS18570 0.27 +1.4
125,806 - HMPREF1058_RS18570 0.27 -0.4
125,952 - HMPREF1058_RS18570 0.54 +0.6
126,041 + -1.0
126,042 - HMPREF1058_RS18570 0.71 +1.3
126,045 + HMPREF1058_RS18570 0.71 -0.8
126,046 - HMPREF1058_RS18570 0.71 +0.0
126,382 + HMPREF1058_RS18565 0.39 -0.1
126,525 - HMPREF1058_RS18565 0.70 -2.1
126,525 - HMPREF1058_RS18565 0.70 +0.1
126,620 + +0.9
126,620 + -0.3
126,621 - -0.4
126,833 - HMPREF1058_RS18560 0.24 +0.9
126,925 - HMPREF1058_RS18560 0.39 -1.1
126,945 + HMPREF1058_RS18560 0.42 +1.3
126,985 + HMPREF1058_RS18560 0.48 +0.7
127,035 - HMPREF1058_RS18560 0.56 -1.2
127,085 + HMPREF1058_RS18560 0.64 -0.6
127,086 - HMPREF1058_RS18560 0.65 -1.7
127,107 + HMPREF1058_RS18560 0.68 +1.2
127,109 + HMPREF1058_RS18560 0.68 +1.4
127,110 - HMPREF1058_RS18560 0.68 +0.5
127,125 - -0.3
127,163 + HMPREF1058_RS18560 0.77 +0.7
127,319 + -0.6
127,322 - +0.2
127,359 + -3.1
127,359 + -1.7
127,397 + -0.4
127,411 + -0.6
127,412 - -0.6
127,419 + +0.7
127,419 + +3.0
127,430 - -0.8
127,509 + -0.5
127,553 + HMPREF1058_RS18555 0.11 -0.2
127,579 + HMPREF1058_RS18555 0.13 -0.1
127,600 - HMPREF1058_RS18555 0.15 -3.1
127,600 - HMPREF1058_RS18555 0.15 -2.5
127,692 + HMPREF1058_RS18555 0.21 +0.6
127,728 + HMPREF1058_RS18555 0.23 -1.7
127,815 + HMPREF1058_RS18555 0.29 +0.1
127,819 + HMPREF1058_RS18555 0.29 -0.2
127,963 + HMPREF1058_RS18555 0.39 -0.6
127,966 + HMPREF1058_RS18555 0.39 -0.6
127,966 + HMPREF1058_RS18555 0.39 -1.8
127,971 + HMPREF1058_RS18555 0.40 +0.0
127,972 - HMPREF1058_RS18555 0.40 -0.1
128,199 + -0.6
128,200 - HMPREF1058_RS18555 0.55 -0.4
128,200 - HMPREF1058_RS18555 0.55 -1.0
128,200 - HMPREF1058_RS18555 0.55 -0.7

Or see this region's nucleotide sequence