Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18225 and HMPREF1058_RS18220 are separated by 50 nucleotides HMPREF1058_RS18220 and HMPREF1058_RS18215 are separated by 36 nucleotides
HMPREF1058_RS18225: HMPREF1058_RS18225 - DNA repair protein RecN, at 228,429 to 230,090
_RS18225
HMPREF1058_RS18220: HMPREF1058_RS18220 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 230,141 to 230,908
_RS18220
HMPREF1058_RS18215: HMPREF1058_RS18215 - serine protease, at 230,945 to 232,645
_RS18215
Position (kb) 230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 229.187 kb on + strand, within HMPREF1058_RS18225 at 229.192 kb on + strand, within HMPREF1058_RS18225 at 229.192 kb on + strand, within HMPREF1058_RS18225 at 229.234 kb on + strand, within HMPREF1058_RS18225 at 229.245 kb on + strand, within HMPREF1058_RS18225 at 229.246 kb on - strand, within HMPREF1058_RS18225 at 229.249 kb on + strand, within HMPREF1058_RS18225 at 229.250 kb on - strand, within HMPREF1058_RS18225 at 229.250 kb on - strand, within HMPREF1058_RS18225 at 229.277 kb on - strand, within HMPREF1058_RS18225 at 229.323 kb on + strand, within HMPREF1058_RS18225 at 229.327 kb on + strand, within HMPREF1058_RS18225 at 229.351 kb on - strand, within HMPREF1058_RS18225 at 229.375 kb on + strand, within HMPREF1058_RS18225 at 229.455 kb on - strand, within HMPREF1058_RS18225 at 229.486 kb on + strand, within HMPREF1058_RS18225 at 229.487 kb on - strand, within HMPREF1058_RS18225 at 229.643 kb on + strand, within HMPREF1058_RS18225 at 229.644 kb on - strand, within HMPREF1058_RS18225 at 229.705 kb on + strand, within HMPREF1058_RS18225 at 229.790 kb on + strand, within HMPREF1058_RS18225 at 229.942 kb on + strand at 229.944 kb on + strand at 229.945 kb on - strand at 229.947 kb on - strand at 229.947 kb on - strand at 230.024 kb on + strand at 230.136 kb on + strand at 230.137 kb on - strand at 230.141 kb on - strand at 230.141 kb on - strand at 230.193 kb on + strand at 230.211 kb on + strand at 230.215 kb on + strand at 230.220 kb on + strand, within HMPREF1058_RS18220 at 230.236 kb on + strand, within HMPREF1058_RS18220 at 230.318 kb on - strand, within HMPREF1058_RS18220 at 230.326 kb on + strand, within HMPREF1058_RS18220 at 230.355 kb on + strand, within HMPREF1058_RS18220 at 230.355 kb on + strand, within HMPREF1058_RS18220 at 230.463 kb on + strand, within HMPREF1058_RS18220 at 230.464 kb on - strand, within HMPREF1058_RS18220 at 230.467 kb on + strand, within HMPREF1058_RS18220 at 230.522 kb on - strand, within HMPREF1058_RS18220 at 230.623 kb on + strand, within HMPREF1058_RS18220 at 230.661 kb on + strand, within HMPREF1058_RS18220 at 230.662 kb on - strand, within HMPREF1058_RS18220 at 230.684 kb on + strand, within HMPREF1058_RS18220 at 230.693 kb on - strand, within HMPREF1058_RS18220 at 230.718 kb on + strand, within HMPREF1058_RS18220 at 230.719 kb on - strand, within HMPREF1058_RS18220 at 230.722 kb on + strand, within HMPREF1058_RS18220 at 230.723 kb on - strand, within HMPREF1058_RS18220 at 230.723 kb on - strand, within HMPREF1058_RS18220 at 230.729 kb on - strand, within HMPREF1058_RS18220 at 230.811 kb on + strand, within HMPREF1058_RS18220 at 230.811 kb on + strand, within HMPREF1058_RS18220 at 230.906 kb on + strand at 230.910 kb on + strand at 230.910 kb on + strand at 230.911 kb on - strand at 230.935 kb on + strand at 230.935 kb on + strand at 230.935 kb on + strand at 230.939 kb on + strand at 230.939 kb on + strand at 230.992 kb on - strand at 231.056 kb on - strand at 231.056 kb on - strand at 231.056 kb on - strand at 231.085 kb on + strand at 231.101 kb on + strand at 231.101 kb on + strand at 231.134 kb on + strand, within HMPREF1058_RS18215 at 231.137 kb on - strand, within HMPREF1058_RS18215 at 231.137 kb on - strand, within HMPREF1058_RS18215 at 231.199 kb on - strand, within HMPREF1058_RS18215 at 231.227 kb on + strand, within HMPREF1058_RS18215 at 231.270 kb on + strand, within HMPREF1058_RS18215 at 231.270 kb on + strand, within HMPREF1058_RS18215 at 231.404 kb on + strand, within HMPREF1058_RS18215 at 231.405 kb on - strand, within HMPREF1058_RS18215 at 231.405 kb on - strand, within HMPREF1058_RS18215 at 231.408 kb on - strand, within HMPREF1058_RS18215 at 231.454 kb on + strand, within HMPREF1058_RS18215 at 231.454 kb on + strand, within HMPREF1058_RS18215 at 231.454 kb on + strand, within HMPREF1058_RS18215 at 231.536 kb on - strand, within HMPREF1058_RS18215 at 231.539 kb on + strand, within HMPREF1058_RS18215 at 231.540 kb on - strand, within HMPREF1058_RS18215 at 231.683 kb on + strand, within HMPREF1058_RS18215 at 231.685 kb on + strand, within HMPREF1058_RS18215 at 231.686 kb on - strand, within HMPREF1058_RS18215 at 231.696 kb on + strand, within HMPREF1058_RS18215 at 231.741 kb on + strand, within HMPREF1058_RS18215 at 231.742 kb on - strand, within HMPREF1058_RS18215 at 231.754 kb on + strand, within HMPREF1058_RS18215 at 231.759 kb on - strand, within HMPREF1058_RS18215 at 231.759 kb on - strand, within HMPREF1058_RS18215 at 231.759 kb on - strand, within HMPREF1058_RS18215 at 231.770 kb on - strand, within HMPREF1058_RS18215 at 231.853 kb on + strand, within HMPREF1058_RS18215 at 231.872 kb on + strand, within HMPREF1058_RS18215 at 231.879 kb on - strand, within HMPREF1058_RS18215 at 231.891 kb on + strand, within HMPREF1058_RS18215
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 229,187 + HMPREF1058_RS18225 0.46 -1.1 229,192 + HMPREF1058_RS18225 0.46 -0.1 229,192 + HMPREF1058_RS18225 0.46 -0.6 229,234 + HMPREF1058_RS18225 0.48 +0.3 229,245 + HMPREF1058_RS18225 0.49 +0.6 229,246 - HMPREF1058_RS18225 0.49 +0.9 229,249 + HMPREF1058_RS18225 0.49 -0.6 229,250 - HMPREF1058_RS18225 0.49 -1.2 229,250 - HMPREF1058_RS18225 0.49 +0.1 229,277 - HMPREF1058_RS18225 0.51 -1.9 229,323 + HMPREF1058_RS18225 0.54 +1.1 229,327 + HMPREF1058_RS18225 0.54 +0.5 229,351 - HMPREF1058_RS18225 0.55 -0.2 229,375 + HMPREF1058_RS18225 0.57 -1.5 229,455 - HMPREF1058_RS18225 0.62 +1.4 229,486 + HMPREF1058_RS18225 0.64 -0.6 229,487 - HMPREF1058_RS18225 0.64 +0.6 229,643 + HMPREF1058_RS18225 0.73 +0.5 229,644 - HMPREF1058_RS18225 0.73 -0.6 229,705 + HMPREF1058_RS18225 0.77 -0.4 229,790 + HMPREF1058_RS18225 0.82 +0.0 229,942 + +1.1 229,944 + +0.6 229,945 - -2.5 229,947 - +0.9 229,947 - -0.0 230,024 + +0.2 230,136 + +1.7 230,137 - +0.2 230,141 - +1.1 230,141 - +0.8 230,193 + +0.3 230,211 + -0.5 230,215 + +0.9 230,220 + HMPREF1058_RS18220 0.10 -1.2 230,236 + HMPREF1058_RS18220 0.12 -0.4 230,318 - HMPREF1058_RS18220 0.23 +2.6 230,326 + HMPREF1058_RS18220 0.24 +0.9 230,355 + HMPREF1058_RS18220 0.28 -1.0 230,355 + HMPREF1058_RS18220 0.28 +1.0 230,463 + HMPREF1058_RS18220 0.42 -0.2 230,464 - HMPREF1058_RS18220 0.42 +0.8 230,467 + HMPREF1058_RS18220 0.42 -0.3 230,522 - HMPREF1058_RS18220 0.50 +0.5 230,623 + HMPREF1058_RS18220 0.63 +1.0 230,661 + HMPREF1058_RS18220 0.68 +1.7 230,662 - HMPREF1058_RS18220 0.68 +0.5 230,684 + HMPREF1058_RS18220 0.71 +1.4 230,693 - HMPREF1058_RS18220 0.72 +2.7 230,718 + HMPREF1058_RS18220 0.75 -0.0 230,719 - HMPREF1058_RS18220 0.75 +1.0 230,722 + HMPREF1058_RS18220 0.76 +4.2 230,723 - HMPREF1058_RS18220 0.76 +1.2 230,723 - HMPREF1058_RS18220 0.76 +0.6 230,729 - HMPREF1058_RS18220 0.77 -0.3 230,811 + HMPREF1058_RS18220 0.87 +0.1 230,811 + HMPREF1058_RS18220 0.87 +1.1 230,906 + +0.6 230,910 + -0.4 230,910 + +0.0 230,911 - -1.3 230,935 + -0.4 230,935 + +0.0 230,935 + -1.2 230,939 + -0.2 230,939 + +0.7 230,992 - +2.0 231,056 - -1.1 231,056 - -2.0 231,056 - +0.5 231,085 + -2.3 231,101 + +0.4 231,101 + -0.8 231,134 + HMPREF1058_RS18215 0.11 -2.1 231,137 - HMPREF1058_RS18215 0.11 +1.0 231,137 - HMPREF1058_RS18215 0.11 -0.6 231,199 - HMPREF1058_RS18215 0.15 +1.2 231,227 + HMPREF1058_RS18215 0.17 -2.5 231,270 + HMPREF1058_RS18215 0.19 -0.4 231,270 + HMPREF1058_RS18215 0.19 -1.3 231,404 + HMPREF1058_RS18215 0.27 -0.9 231,405 - HMPREF1058_RS18215 0.27 -2.0 231,405 - HMPREF1058_RS18215 0.27 -1.4 231,408 - HMPREF1058_RS18215 0.27 -1.3 231,454 + HMPREF1058_RS18215 0.30 -0.3 231,454 + HMPREF1058_RS18215 0.30 -1.2 231,454 + HMPREF1058_RS18215 0.30 -1.3 231,536 - HMPREF1058_RS18215 0.35 -0.7 231,539 + HMPREF1058_RS18215 0.35 -0.1 231,540 - HMPREF1058_RS18215 0.35 -0.5 231,683 + HMPREF1058_RS18215 0.43 -1.5 231,685 + HMPREF1058_RS18215 0.44 -0.5 231,686 - HMPREF1058_RS18215 0.44 +0.5 231,696 + HMPREF1058_RS18215 0.44 -1.4 231,741 + HMPREF1058_RS18215 0.47 +0.7 231,742 - HMPREF1058_RS18215 0.47 -1.7 231,754 + HMPREF1058_RS18215 0.48 +0.5 231,759 - HMPREF1058_RS18215 0.48 -0.5 231,759 - HMPREF1058_RS18215 0.48 -3.2 231,759 - HMPREF1058_RS18215 0.48 -0.4 231,770 - HMPREF1058_RS18215 0.49 +1.6 231,853 + HMPREF1058_RS18215 0.53 +0.7 231,872 + HMPREF1058_RS18215 0.54 -0.8 231,879 - HMPREF1058_RS18215 0.55 -0.1 231,891 + HMPREF1058_RS18215 0.56 -0.7
Or see this region's nucleotide sequence