Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119310 and HMPREF1058_RS18160 are separated by 107 nucleotides HMPREF1058_RS18160 and HMPREF1058_RS18155 are separated by 139 nucleotides HMPREF1058_RS18155 and HMPREF1058_RS18150 are separated by 9 nucleotides HMPREF1058_RS18150 and HMPREF1058_RS18145 are separated by 2 nucleotides
HMPREF1058_RS0119310: HMPREF1058_RS0119310 - DUF3987 domain-containing protein, at 244,138 to 245,163
_RS0119310
HMPREF1058_RS18160: HMPREF1058_RS18160 - hypothetical protein, at 245,271 to 245,513
_RS18160
HMPREF1058_RS18155: HMPREF1058_RS18155 - helix-turn-helix transcriptional regulator, at 245,653 to 246,315
_RS18155
HMPREF1058_RS18150: HMPREF1058_RS18150 - Fic family protein, at 246,325 to 247,065
_RS18150
HMPREF1058_RS18145: HMPREF1058_RS18145 - Fic family protein, at 247,068 to 247,829
_RS18145
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 244.664 kb on + strand, within HMPREF1058_RS0119310 at 244.884 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand, within HMPREF1058_RS0119310 at 244.931 kb on + strand at 244.988 kb on - strand, within HMPREF1058_RS0119310 at 244.989 kb on + strand, within HMPREF1058_RS0119310 at 244.990 kb on - strand, within HMPREF1058_RS0119310 at 245.011 kb on + strand, within HMPREF1058_RS0119310 at 245.012 kb on - strand, within HMPREF1058_RS0119310 at 245.014 kb on - strand, within HMPREF1058_RS0119310 at 245.039 kb on + strand, within HMPREF1058_RS0119310 at 245.139 kb on + strand at 245.139 kb on + strand at 245.140 kb on - strand at 245.140 kb on - strand at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.407 kb on + strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.408 kb on - strand, within HMPREF1058_RS18160 at 245.644 kb on + strand at 245.672 kb on + strand at 245.699 kb on + strand at 245.898 kb on + strand, within HMPREF1058_RS18155 at 246.081 kb on + strand, within HMPREF1058_RS18155 at 246.138 kb on + strand, within HMPREF1058_RS18155 at 246.142 kb on + strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.214 kb on - strand, within HMPREF1058_RS18155 at 246.291 kb on + strand at 246.294 kb on + strand at 246.324 kb on + strand at 246.325 kb on - strand at 246.429 kb on - strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.437 kb on + strand, within HMPREF1058_RS18150 at 246.448 kb on + strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.449 kb on - strand, within HMPREF1058_RS18150 at 246.472 kb on - strand, within HMPREF1058_RS18150 at 246.478 kb on - strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.481 kb on + strand, within HMPREF1058_RS18150 at 246.482 kb on - strand, within HMPREF1058_RS18150 at 246.532 kb on + strand, within HMPREF1058_RS18150 at 246.532 kb on + strand, within HMPREF1058_RS18150 at 246.621 kb on - strand, within HMPREF1058_RS18150 at 246.732 kb on + strand, within HMPREF1058_RS18150 at 246.732 kb on + strand, within HMPREF1058_RS18150 at 246.734 kb on + strand, within HMPREF1058_RS18150 at 246.756 kb on + strand, within HMPREF1058_RS18150 at 246.780 kb on - strand, within HMPREF1058_RS18150 at 246.800 kb on - strand, within HMPREF1058_RS18150 at 246.843 kb on - strand, within HMPREF1058_RS18150 at 246.922 kb on - strand, within HMPREF1058_RS18150 at 246.956 kb on + strand, within HMPREF1058_RS18150 at 246.957 kb on - strand, within HMPREF1058_RS18150 at 246.957 kb on - strand, within HMPREF1058_RS18150 at 246.964 kb on + strand, within HMPREF1058_RS18150 at 246.977 kb on + strand, within HMPREF1058_RS18150 at 247.041 kb on - strand at 247.058 kb on + strand at 247.058 kb on + strand at 247.063 kb on + strand at 247.063 kb on + strand at 247.064 kb on - strand at 247.067 kb on + strand at 247.067 kb on + strand at 247.067 kb on + strand at 247.079 kb on + strand at 247.202 kb on + strand, within HMPREF1058_RS18145 at 247.220 kb on + strand, within HMPREF1058_RS18145 at 247.231 kb on + strand, within HMPREF1058_RS18145 at 247.250 kb on - strand, within HMPREF1058_RS18145 at 247.265 kb on + strand, within HMPREF1058_RS18145 at 247.269 kb on - strand, within HMPREF1058_RS18145
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 244,664 + HMPREF1058_RS0119310 0.51 -0.2 244,884 + HMPREF1058_RS0119310 0.73 +0.4 244,931 + HMPREF1058_RS0119310 0.77 -0.3 244,931 + +3.0 244,988 - HMPREF1058_RS0119310 0.83 +0.4 244,989 + HMPREF1058_RS0119310 0.83 +0.1 244,990 - HMPREF1058_RS0119310 0.83 -0.9 245,011 + HMPREF1058_RS0119310 0.85 +0.7 245,012 - HMPREF1058_RS0119310 0.85 -0.7 245,014 - HMPREF1058_RS0119310 0.85 -0.5 245,039 + HMPREF1058_RS0119310 0.88 -0.5 245,139 + -0.4 245,139 + -0.3 245,140 - -0.8 245,140 - +0.5 245,407 + HMPREF1058_RS18160 0.56 -1.3 245,407 + HMPREF1058_RS18160 0.56 +0.1 245,408 - HMPREF1058_RS18160 0.56 -0.2 245,408 - HMPREF1058_RS18160 0.56 -0.8 245,644 + -0.2 245,672 + +0.1 245,699 + +0.3 245,898 + HMPREF1058_RS18155 0.37 -0.5 246,081 + HMPREF1058_RS18155 0.65 +0.9 246,138 + HMPREF1058_RS18155 0.73 +0.0 246,142 + HMPREF1058_RS18155 0.74 +1.2 246,214 - HMPREF1058_RS18155 0.85 +0.6 246,214 - HMPREF1058_RS18155 0.85 -0.6 246,291 + +0.3 246,294 + -0.0 246,324 + +0.5 246,325 - +0.0 246,429 - HMPREF1058_RS18150 0.14 +1.1 246,437 + HMPREF1058_RS18150 0.15 +0.6 246,437 + HMPREF1058_RS18150 0.15 +0.6 246,448 + HMPREF1058_RS18150 0.17 -1.0 246,449 - HMPREF1058_RS18150 0.17 -0.5 246,449 - HMPREF1058_RS18150 0.17 +0.4 246,472 - HMPREF1058_RS18150 0.20 +0.7 246,478 - HMPREF1058_RS18150 0.21 -1.6 246,481 + HMPREF1058_RS18150 0.21 -0.9 246,481 + HMPREF1058_RS18150 0.21 -1.5 246,482 - HMPREF1058_RS18150 0.21 -1.1 246,532 + HMPREF1058_RS18150 0.28 -0.1 246,532 + HMPREF1058_RS18150 0.28 -0.2 246,621 - HMPREF1058_RS18150 0.40 +0.2 246,732 + HMPREF1058_RS18150 0.55 +0.3 246,732 + HMPREF1058_RS18150 0.55 +0.4 246,734 + HMPREF1058_RS18150 0.55 +0.2 246,756 + HMPREF1058_RS18150 0.58 -1.0 246,780 - HMPREF1058_RS18150 0.61 -0.2 246,800 - HMPREF1058_RS18150 0.64 -0.2 246,843 - HMPREF1058_RS18150 0.70 -1.9 246,922 - HMPREF1058_RS18150 0.81 +1.4 246,956 + HMPREF1058_RS18150 0.85 +0.2 246,957 - HMPREF1058_RS18150 0.85 -0.1 246,957 - HMPREF1058_RS18150 0.85 +0.2 246,964 + HMPREF1058_RS18150 0.86 -0.5 246,977 + HMPREF1058_RS18150 0.88 -1.8 247,041 - +3.0 247,058 + -0.8 247,058 + -0.6 247,063 + -0.6 247,063 + -0.0 247,064 - +1.0 247,067 + -0.3 247,067 + +0.1 247,067 + -0.5 247,079 + +0.5 247,202 + HMPREF1058_RS18145 0.18 -0.4 247,220 + HMPREF1058_RS18145 0.20 +1.7 247,231 + HMPREF1058_RS18145 0.21 -2.9 247,250 - HMPREF1058_RS18145 0.24 -0.3 247,265 + HMPREF1058_RS18145 0.26 +0.7 247,269 - HMPREF1058_RS18145 0.26 -0.7
Or see this region's nucleotide sequence