Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18100 and HMPREF1058_RS18095 are separated by 311 nucleotides HMPREF1058_RS18095 and HMPREF1058_RS18090 overlap by 4 nucleotides HMPREF1058_RS18090 and HMPREF1058_RS18085 are separated by 126 nucleotides HMPREF1058_RS18085 and HMPREF1058_RS18080 are separated by 284 nucleotides
HMPREF1058_RS18100: HMPREF1058_RS18100 - (Fe-S)-binding protein, at 259,220 to 259,960
_RS18100
HMPREF1058_RS18095: HMPREF1058_RS18095 - response regulator transcription factor, at 260,272 to 260,883
_RS18095
HMPREF1058_RS18090: HMPREF1058_RS18090 - hemerythrin domain-containing protein, at 260,880 to 261,575
_RS18090
HMPREF1058_RS18085: HMPREF1058_RS18085 - tryptophan-rich sensory protein, at 261,702 to 262,166
_RS18085
HMPREF1058_RS18080: HMPREF1058_RS18080 - response regulator transcription factor, at 262,451 to 263,176
_RS18080
Position (kb) 260
261
262 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 259.932 kb on + strand at 259.952 kb on + strand at 259.953 kb on - strand at 259.968 kb on - strand at 259.972 kb on - strand at 259.983 kb on + strand at 260.069 kb on + strand at 260.072 kb on + strand at 260.090 kb on + strand at 260.091 kb on - strand at 260.093 kb on + strand at 260.142 kb on + strand at 260.146 kb on - strand at 260.182 kb on - strand at 260.186 kb on + strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.200 kb on - strand at 260.235 kb on - strand at 260.235 kb on - strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.244 kb on - strand at 260.249 kb on - strand at 260.266 kb on + strand at 260.270 kb on + strand at 260.270 kb on + strand at 260.274 kb on - strand at 260.275 kb on + strand at 260.275 kb on + strand at 260.297 kb on - strand at 260.329 kb on - strand at 260.350 kb on + strand, within HMPREF1058_RS18095 at 260.350 kb on + strand, within HMPREF1058_RS18095 at 260.356 kb on + strand, within HMPREF1058_RS18095 at 260.371 kb on - strand, within HMPREF1058_RS18095 at 260.461 kb on - strand, within HMPREF1058_RS18095 at 260.533 kb on + strand, within HMPREF1058_RS18095 at 260.567 kb on + strand, within HMPREF1058_RS18095 at 260.568 kb on - strand, within HMPREF1058_RS18095 at 260.570 kb on - strand, within HMPREF1058_RS18095 at 260.608 kb on - strand, within HMPREF1058_RS18095 at 260.714 kb on - strand, within HMPREF1058_RS18095 at 260.783 kb on - strand, within HMPREF1058_RS18095 at 260.787 kb on + strand, within HMPREF1058_RS18095 at 260.904 kb on - strand at 260.904 kb on - strand at 260.908 kb on - strand at 260.973 kb on + strand, within HMPREF1058_RS18090 at 261.025 kb on + strand, within HMPREF1058_RS18090 at 261.026 kb on - strand, within HMPREF1058_RS18090 at 261.045 kb on + strand, within HMPREF1058_RS18090 at 261.046 kb on - strand, within HMPREF1058_RS18090 at 261.138 kb on + strand, within HMPREF1058_RS18090 at 261.142 kb on + strand, within HMPREF1058_RS18090 at 261.142 kb on + strand, within HMPREF1058_RS18090 at 261.146 kb on + strand, within HMPREF1058_RS18090 at 261.158 kb on + strand, within HMPREF1058_RS18090 at 261.252 kb on + strand, within HMPREF1058_RS18090 at 261.344 kb on + strand, within HMPREF1058_RS18090 at 261.350 kb on + strand, within HMPREF1058_RS18090 at 261.351 kb on - strand, within HMPREF1058_RS18090 at 261.454 kb on - strand, within HMPREF1058_RS18090 at 261.512 kb on + strand at 261.512 kb on + strand at 261.513 kb on - strand at 261.527 kb on + strand at 261.528 kb on - strand at 261.532 kb on + strand at 261.557 kb on - strand at 261.557 kb on - strand at 261.561 kb on - strand at 261.575 kb on + strand at 261.575 kb on + strand at 261.641 kb on + strand at 261.643 kb on + strand at 261.644 kb on - strand at 261.644 kb on - strand at 261.644 kb on - strand at 261.644 kb on - strand at 261.644 kb on - strand at 261.644 kb on - strand at 261.651 kb on + strand at 261.664 kb on - strand at 261.708 kb on - strand at 261.710 kb on - strand at 261.710 kb on - strand at 261.714 kb on + strand at 261.715 kb on - strand at 261.715 kb on - strand at 261.717 kb on + strand at 261.718 kb on - strand at 261.718 kb on - strand at 261.719 kb on + strand at 261.722 kb on - strand at 261.813 kb on - strand, within HMPREF1058_RS18085 at 261.858 kb on + strand, within HMPREF1058_RS18085 at 261.960 kb on + strand, within HMPREF1058_RS18085 at 261.962 kb on + strand, within HMPREF1058_RS18085 at 261.962 kb on + strand, within HMPREF1058_RS18085 at 261.962 kb on + strand, within HMPREF1058_RS18085 at 261.962 kb on + strand, within HMPREF1058_RS18085 at 261.963 kb on - strand, within HMPREF1058_RS18085 at 262.000 kb on + strand, within HMPREF1058_RS18085 at 262.001 kb on - strand, within HMPREF1058_RS18085 at 262.005 kb on - strand, within HMPREF1058_RS18085 at 262.005 kb on - strand, within HMPREF1058_RS18085 at 262.030 kb on - strand, within HMPREF1058_RS18085 at 262.030 kb on - strand, within HMPREF1058_RS18085 at 262.043 kb on + strand, within HMPREF1058_RS18085 at 262.100 kb on - strand, within HMPREF1058_RS18085 at 262.100 kb on - strand, within HMPREF1058_RS18085 at 262.110 kb on - strand, within HMPREF1058_RS18085 at 262.130 kb on + strand at 262.130 kb on + strand at 262.130 kb on + strand at 262.131 kb on - strand at 262.134 kb on + strand at 262.134 kb on + strand at 262.134 kb on + strand at 262.135 kb on - strand at 262.135 kb on - strand at 262.135 kb on - strand at 262.146 kb on + strand at 262.147 kb on - strand at 262.183 kb on - strand at 262.186 kb on + strand at 262.297 kb on + strand at 262.298 kb on - strand at 262.298 kb on - strand at 262.316 kb on + strand at 262.317 kb on - strand at 262.327 kb on - strand at 262.331 kb on + strand at 262.331 kb on + strand at 262.331 kb on + strand at 262.332 kb on - strand at 262.332 kb on - strand at 262.340 kb on - strand at 262.515 kb on + strand at 262.516 kb on - strand at 262.555 kb on + strand, within HMPREF1058_RS18080
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 259,932 + -2.0 259,952 + -0.1 259,953 - -0.4 259,968 - -0.5 259,972 - -1.8 259,983 + -0.8 260,069 + -0.8 260,072 + +0.7 260,090 + -2.0 260,091 - -1.3 260,093 + +0.3 260,142 + +0.4 260,146 - +0.5 260,182 - +1.0 260,186 + +0.0 260,187 - +0.1 260,187 - -1.5 260,187 - -0.1 260,200 - +0.6 260,235 - -0.2 260,235 - -0.2 260,243 + -0.9 260,243 + -2.1 260,244 - +0.5 260,249 - -0.9 260,266 + +0.6 260,270 + -2.2 260,270 + -0.3 260,274 - -0.6 260,275 + +0.1 260,275 + -0.8 260,297 - -0.3 260,329 - +0.2 260,350 + HMPREF1058_RS18095 0.13 -0.5 260,350 + HMPREF1058_RS18095 0.13 +0.7 260,356 + HMPREF1058_RS18095 0.14 -0.0 260,371 - HMPREF1058_RS18095 0.16 +0.6 260,461 - HMPREF1058_RS18095 0.31 -0.3 260,533 + HMPREF1058_RS18095 0.43 +0.7 260,567 + HMPREF1058_RS18095 0.48 +0.2 260,568 - HMPREF1058_RS18095 0.48 +0.3 260,570 - HMPREF1058_RS18095 0.49 +0.5 260,608 - HMPREF1058_RS18095 0.55 -0.8 260,714 - HMPREF1058_RS18095 0.72 -0.3 260,783 - HMPREF1058_RS18095 0.83 -0.1 260,787 + HMPREF1058_RS18095 0.84 +0.2 260,904 - +0.6 260,904 - +0.0 260,908 - -0.2 260,973 + HMPREF1058_RS18090 0.13 +0.5 261,025 + HMPREF1058_RS18090 0.21 +0.0 261,026 - HMPREF1058_RS18090 0.21 +0.9 261,045 + HMPREF1058_RS18090 0.24 +0.1 261,046 - HMPREF1058_RS18090 0.24 +0.9 261,138 + HMPREF1058_RS18090 0.37 +0.5 261,142 + HMPREF1058_RS18090 0.38 +0.9 261,142 + HMPREF1058_RS18090 0.38 +0.5 261,146 + HMPREF1058_RS18090 0.38 +0.8 261,158 + HMPREF1058_RS18090 0.40 +0.7 261,252 + HMPREF1058_RS18090 0.53 -1.5 261,344 + HMPREF1058_RS18090 0.67 +0.8 261,350 + HMPREF1058_RS18090 0.68 +0.8 261,351 - HMPREF1058_RS18090 0.68 -0.6 261,454 - HMPREF1058_RS18090 0.82 +0.7 261,512 + +0.5 261,512 + -0.3 261,513 - +0.2 261,527 + +0.3 261,528 - -0.4 261,532 + -0.2 261,557 - -0.1 261,557 - -0.4 261,561 - +0.6 261,575 + +0.2 261,575 + -0.1 261,641 + -0.6 261,643 + +1.0 261,644 - +0.9 261,644 - -0.4 261,644 - +0.5 261,644 - -0.4 261,644 - -0.2 261,644 - -0.3 261,651 + +1.1 261,664 - -1.6 261,708 - +0.5 261,710 - +0.7 261,710 - +0.3 261,714 + +1.0 261,715 - -0.1 261,715 - -1.6 261,717 + -1.3 261,718 - +1.2 261,718 - -0.0 261,719 + -1.4 261,722 - +0.7 261,813 - HMPREF1058_RS18085 0.24 -0.8 261,858 + HMPREF1058_RS18085 0.34 -0.2 261,960 + HMPREF1058_RS18085 0.55 +0.9 261,962 + HMPREF1058_RS18085 0.56 +0.8 261,962 + HMPREF1058_RS18085 0.56 +0.4 261,962 + HMPREF1058_RS18085 0.56 -1.3 261,962 + HMPREF1058_RS18085 0.56 +0.6 261,963 - HMPREF1058_RS18085 0.56 -0.3 262,000 + HMPREF1058_RS18085 0.64 -0.0 262,001 - HMPREF1058_RS18085 0.64 +0.8 262,005 - HMPREF1058_RS18085 0.65 -0.4 262,005 - HMPREF1058_RS18085 0.65 -0.3 262,030 - HMPREF1058_RS18085 0.71 +0.0 262,030 - HMPREF1058_RS18085 0.71 +0.0 262,043 + HMPREF1058_RS18085 0.73 -1.0 262,100 - HMPREF1058_RS18085 0.86 -1.6 262,100 - HMPREF1058_RS18085 0.86 +2.1 262,110 - HMPREF1058_RS18085 0.88 -0.5 262,130 + +0.0 262,130 + +1.0 262,130 + +0.9 262,131 - -1.3 262,134 + -1.3 262,134 + -0.8 262,134 + -0.6 262,135 - -0.7 262,135 - +0.2 262,135 - -0.7 262,146 + -0.3 262,147 - -0.4 262,183 - -0.4 262,186 + -0.1 262,297 + -1.8 262,298 - +0.1 262,298 - -1.5 262,316 + -0.4 262,317 - -0.6 262,327 - -0.5 262,331 + -4.2 262,331 + +1.5 262,331 + -0.7 262,332 - -0.0 262,332 - +2.0 262,340 - -2.3 262,515 + -0.8 262,516 - -1.7 262,555 + HMPREF1058_RS18080 0.14 +0.8
Or see this region's nucleotide sequence