Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17980

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17985 and HMPREF1058_RS17980 are separated by 724 nucleotidesHMPREF1058_RS17980 and HMPREF1058_RS20410 are separated by 62 nucleotidesHMPREF1058_RS20410 and HMPREF1058_RS17975 are separated by 148 nucleotides HMPREF1058_RS17985: HMPREF1058_RS17985 - ATP-binding cassette domain-containing protein, at 285,482 to 286,930 _RS17985 HMPREF1058_RS17980: HMPREF1058_RS17980 - hypothetical protein, at 287,655 to 288,380 _RS17980 HMPREF1058_RS20410: HMPREF1058_RS20410 - hypothetical protein, at 288,443 to 288,675 _RS20410 HMPREF1058_RS17975: HMPREF1058_RS17975 - ATP-dependent dethiobiotin synthetase BioD, at 288,824 to 289,468 _RS17975 Position (kb) 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1at 286.695 kb on + strand, within HMPREF1058_RS17985at 286.702 kb on + strand, within HMPREF1058_RS17985at 286.791 kb on - strandat 286.832 kb on + strandat 286.832 kb on + strandat 286.834 kb on + strandat 286.835 kb on - strandat 286.835 kb on - strandat 286.859 kb on - strandat 286.994 kb on - strandat 287.027 kb on + strandat 287.028 kb on - strandat 287.032 kb on - strandat 287.050 kb on - strandat 287.076 kb on + strandat 287.088 kb on - strandat 287.243 kb on + strandat 287.243 kb on + strandat 287.244 kb on - strandat 287.247 kb on + strandat 287.249 kb on + strandat 287.249 kb on + strandat 287.249 kb on - strandat 287.272 kb on + strandat 287.272 kb on + strandat 287.315 kb on + strandat 287.315 kb on + strandat 287.450 kb on - strandat 287.473 kb on - strandat 287.475 kb on - strandat 287.475 kb on - strandat 287.561 kb on + strandat 287.571 kb on + strandat 287.572 kb on - strandat 287.588 kb on + strandat 287.603 kb on + strandat 287.607 kb on + strandat 287.608 kb on - strandat 287.616 kb on + strandat 287.616 kb on + strandat 287.617 kb on - strandat 287.628 kb on + strandat 287.628 kb on + strandat 287.629 kb on - strandat 287.764 kb on + strand, within HMPREF1058_RS17980at 287.772 kb on + strand, within HMPREF1058_RS17980at 287.886 kb on - strand, within HMPREF1058_RS17980at 287.908 kb on + strand, within HMPREF1058_RS17980at 287.909 kb on - strand, within HMPREF1058_RS17980at 287.997 kb on - strand, within HMPREF1058_RS17980at 288.022 kb on + strand, within HMPREF1058_RS17980at 288.023 kb on - strand, within HMPREF1058_RS17980at 288.023 kb on - strand, within HMPREF1058_RS17980at 288.133 kb on + strand, within HMPREF1058_RS17980at 288.133 kb on + strand, within HMPREF1058_RS17980at 288.202 kb on - strand, within HMPREF1058_RS17980at 288.224 kb on - strand, within HMPREF1058_RS17980at 288.354 kb on + strandat 288.384 kb on + strandat 288.451 kb on - strandat 288.455 kb on - strandat 288.467 kb on + strand, within HMPREF1058_RS20410at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.490 kb on + strand, within HMPREF1058_RS20410at 288.491 kb on - strand, within HMPREF1058_RS20410at 288.493 kb on + strand, within HMPREF1058_RS20410at 288.520 kb on - strand, within HMPREF1058_RS20410at 288.624 kb on + strand, within HMPREF1058_RS20410at 288.625 kb on - strand, within HMPREF1058_RS20410at 288.652 kb on + strandat 288.652 kb on + strandat 288.652 kb on + strandat 288.673 kb on + strandat 288.719 kb on + strandat 288.719 kb on + strandat 288.721 kb on + strandat 288.722 kb on - strandat 288.726 kb on + strandat 288.727 kb on - strandat 288.744 kb on + strandat 288.745 kb on - strandat 288.773 kb on + strandat 288.836 kb on + strandat 288.875 kb on - strandat 288.887 kb on - strandat 288.899 kb on - strand, within HMPREF1058_RS17975at 288.899 kb on - strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.942 kb on + strand, within HMPREF1058_RS17975at 288.951 kb on + strand, within HMPREF1058_RS17975at 288.952 kb on + strand, within HMPREF1058_RS17975at 288.977 kb on + strand, within HMPREF1058_RS17975at 288.978 kb on - strand, within HMPREF1058_RS17975at 289.000 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.009 kb on + strand, within HMPREF1058_RS17975at 289.065 kb on + strand, within HMPREF1058_RS17975at 289.070 kb on + strand, within HMPREF1058_RS17975at 289.071 kb on - strand, within HMPREF1058_RS17975at 289.081 kb on + strand, within HMPREF1058_RS17975at 289.122 kb on - strand, within HMPREF1058_RS17975at 289.138 kb on - strand, within HMPREF1058_RS17975at 289.278 kb on + strand, within HMPREF1058_RS17975at 289.279 kb on - strand, within HMPREF1058_RS17975at 289.363 kb on + strand, within HMPREF1058_RS17975at 289.367 kb on - strand, within HMPREF1058_RS17975

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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286,695 + HMPREF1058_RS17985 0.84 -1.5
286,702 + HMPREF1058_RS17985 0.84 -1.7
286,791 - +0.2
286,832 + -0.8
286,832 + -2.0
286,834 + -0.5
286,835 - -2.1
286,835 - +0.3
286,859 - -1.8
286,994 - +0.1
287,027 + +0.5
287,028 - -0.0
287,032 - +0.6
287,050 - -0.2
287,076 + +0.3
287,088 - +0.3
287,243 + -1.9
287,243 + -0.4
287,244 - +0.9
287,247 + -0.4
287,249 + +1.4
287,249 + +1.7
287,249 - -0.1
287,272 + -1.3
287,272 + +0.4
287,315 + -0.6
287,315 + +0.3
287,450 - +1.4
287,473 - -0.8
287,475 - +0.2
287,475 - -0.1
287,561 + +1.1
287,571 + +0.6
287,572 - +0.8
287,588 + +1.7
287,603 + -0.2
287,607 + -2.0
287,608 - -1.0
287,616 + +1.7
287,616 + -0.8
287,617 - -0.0
287,628 + +0.4
287,628 + -0.4
287,629 - +1.0
287,764 + HMPREF1058_RS17980 0.15 +0.0
287,772 + HMPREF1058_RS17980 0.16 +1.3
287,886 - HMPREF1058_RS17980 0.32 +0.4
287,908 + HMPREF1058_RS17980 0.35 -1.0
287,909 - HMPREF1058_RS17980 0.35 +0.8
287,997 - HMPREF1058_RS17980 0.47 +0.7
288,022 + HMPREF1058_RS17980 0.51 -1.6
288,023 - HMPREF1058_RS17980 0.51 -0.0
288,023 - HMPREF1058_RS17980 0.51 +1.5
288,133 + HMPREF1058_RS17980 0.66 +1.4
288,133 + HMPREF1058_RS17980 0.66 -0.1
288,202 - HMPREF1058_RS17980 0.75 +0.6
288,224 - HMPREF1058_RS17980 0.78 +1.4
288,354 + +0.9
288,384 + -0.2
288,451 - -1.3
288,455 - -1.3
288,467 + HMPREF1058_RS20410 0.10 -0.9
288,490 + HMPREF1058_RS20410 0.20 -0.8
288,490 + HMPREF1058_RS20410 0.20 +0.2
288,491 - HMPREF1058_RS20410 0.21 -0.0
288,493 + HMPREF1058_RS20410 0.21 +0.8
288,520 - HMPREF1058_RS20410 0.33 +0.1
288,624 + HMPREF1058_RS20410 0.78 -0.4
288,625 - HMPREF1058_RS20410 0.78 +0.6
288,652 + +0.9
288,652 + +0.3
288,652 + +0.8
288,673 + -0.1
288,719 + +0.6
288,719 + +0.2
288,721 + +0.1
288,722 - -0.1
288,726 + -1.3
288,727 - -2.0
288,744 + +0.5
288,745 - -1.3
288,773 + -1.7
288,836 + -2.8
288,875 - -2.2
288,887 - -1.7
288,899 - HMPREF1058_RS17975 0.12 +1.2
288,899 - HMPREF1058_RS17975 0.12 -1.7
288,942 + HMPREF1058_RS17975 0.18 -2.4
288,942 + HMPREF1058_RS17975 0.18 -1.6
288,951 + HMPREF1058_RS17975 0.20 -3.6
288,952 + HMPREF1058_RS17975 0.20 -2.3
288,977 + HMPREF1058_RS17975 0.24 -0.9
288,978 - HMPREF1058_RS17975 0.24 -2.3
289,000 + HMPREF1058_RS17975 0.27 -0.4
289,009 + HMPREF1058_RS17975 0.29 -2.4
289,009 + HMPREF1058_RS17975 0.29 -1.1
289,065 + HMPREF1058_RS17975 0.37 -0.6
289,070 + HMPREF1058_RS17975 0.38 -1.6
289,071 - HMPREF1058_RS17975 0.38 -2.3
289,081 + HMPREF1058_RS17975 0.40 -2.1
289,122 - HMPREF1058_RS17975 0.46 -2.3
289,138 - HMPREF1058_RS17975 0.49 +0.4
289,278 + HMPREF1058_RS17975 0.70 -1.2
289,279 - HMPREF1058_RS17975 0.71 -1.9
289,363 + HMPREF1058_RS17975 0.84 -1.2
289,367 - HMPREF1058_RS17975 0.84 -0.9

Or see this region's nucleotide sequence