Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17935 and HMPREF1058_RS17930 are separated by 14 nucleotides HMPREF1058_RS17930 and HMPREF1058_RS17925 are separated by 180 nucleotides
HMPREF1058_RS17935: HMPREF1058_RS17935 - glycosyltransferase, at 296,310 to 297,575
_RS17935
HMPREF1058_RS17930: HMPREF1058_RS17930 - glycogen debranching enzyme N-terminal domain-containing protein, at 297,590 to 299,530
_RS17930
HMPREF1058_RS17925: HMPREF1058_RS17925 - rhomboid family intramembrane serine protease, at 299,711 to 300,376
_RS17925
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 296.613 kb on + strand, within HMPREF1058_RS17935 at 296.613 kb on + strand, within HMPREF1058_RS17935 at 296.630 kb on - strand, within HMPREF1058_RS17935 at 296.800 kb on + strand, within HMPREF1058_RS17935 at 296.991 kb on - strand, within HMPREF1058_RS17935 at 296.991 kb on - strand, within HMPREF1058_RS17935 at 296.994 kb on - strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.032 kb on - strand, within HMPREF1058_RS17935 at 297.033 kb on + strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.204 kb on - strand, within HMPREF1058_RS17935 at 297.261 kb on - strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.285 kb on - strand, within HMPREF1058_RS17935 at 297.285 kb on - strand, within HMPREF1058_RS17935 at 297.286 kb on + strand, within HMPREF1058_RS17935 at 297.301 kb on + strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.306 kb on - strand, within HMPREF1058_RS17935 at 297.306 kb on - strand, within HMPREF1058_RS17935 at 297.322 kb on + strand, within HMPREF1058_RS17935 at 297.360 kb on + strand, within HMPREF1058_RS17935 at 297.364 kb on + strand, within HMPREF1058_RS17935 at 297.364 kb on + strand, within HMPREF1058_RS17935 at 297.370 kb on + strand, within HMPREF1058_RS17935 at 297.371 kb on - strand, within HMPREF1058_RS17935 at 297.412 kb on - strand, within HMPREF1058_RS17935 at 297.414 kb on - strand, within HMPREF1058_RS17935 at 297.501 kb on + strand at 297.508 kb on + strand at 297.508 kb on + strand at 297.595 kb on - strand at 297.600 kb on + strand at 297.646 kb on + strand at 297.704 kb on + strand at 297.706 kb on + strand at 297.707 kb on - strand at 297.715 kb on + strand at 297.785 kb on - strand, within HMPREF1058_RS17930 at 297.787 kb on - strand, within HMPREF1058_RS17930 at 297.787 kb on - strand, within HMPREF1058_RS17930 at 297.790 kb on + strand, within HMPREF1058_RS17930 at 297.799 kb on - strand, within HMPREF1058_RS17930 at 297.810 kb on + strand, within HMPREF1058_RS17930 at 297.811 kb on - strand, within HMPREF1058_RS17930 at 297.849 kb on + strand, within HMPREF1058_RS17930 at 297.856 kb on - strand, within HMPREF1058_RS17930 at 297.883 kb on - strand, within HMPREF1058_RS17930 at 297.938 kb on - strand at 298.011 kb on - strand, within HMPREF1058_RS17930 at 298.015 kb on + strand, within HMPREF1058_RS17930 at 298.016 kb on - strand, within HMPREF1058_RS17930 at 298.051 kb on + strand, within HMPREF1058_RS17930 at 298.065 kb on + strand, within HMPREF1058_RS17930 at 298.077 kb on + strand, within HMPREF1058_RS17930 at 298.084 kb on - strand, within HMPREF1058_RS17930 at 298.133 kb on + strand, within HMPREF1058_RS17930 at 298.190 kb on - strand, within HMPREF1058_RS17930 at 298.220 kb on - strand, within HMPREF1058_RS17930 at 298.234 kb on - strand, within HMPREF1058_RS17930 at 298.444 kb on + strand, within HMPREF1058_RS17930 at 298.489 kb on - strand, within HMPREF1058_RS17930 at 298.609 kb on + strand, within HMPREF1058_RS17930 at 298.610 kb on - strand, within HMPREF1058_RS17930 at 298.610 kb on - strand, within HMPREF1058_RS17930 at 298.703 kb on + strand, within HMPREF1058_RS17930 at 298.723 kb on + strand, within HMPREF1058_RS17930 at 298.774 kb on + strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.964 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.968 kb on - strand, within HMPREF1058_RS17930 at 299.053 kb on + strand, within HMPREF1058_RS17930 at 299.056 kb on - strand, within HMPREF1058_RS17930 at 299.101 kb on + strand, within HMPREF1058_RS17930 at 299.129 kb on - strand, within HMPREF1058_RS17930 at 299.130 kb on + strand, within HMPREF1058_RS17930 at 299.204 kb on + strand, within HMPREF1058_RS17930 at 299.205 kb on - strand at 299.205 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.212 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.265 kb on + strand, within HMPREF1058_RS17930 at 299.281 kb on - strand, within HMPREF1058_RS17930 at 299.318 kb on + strand, within HMPREF1058_RS17930 at 299.348 kb on + strand at 299.348 kb on + strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.431 kb on + strand at 299.520 kb on - strand at 299.520 kb on - strand at 299.530 kb on + strand at 299.531 kb on - strand at 299.531 kb on - strand at 299.542 kb on + strand at 299.677 kb on - strand at 299.679 kb on + strand at 299.699 kb on - strand at 299.834 kb on + strand, within HMPREF1058_RS17925 at 299.856 kb on + strand, within HMPREF1058_RS17925 at 299.905 kb on - strand, within HMPREF1058_RS17925 at 299.938 kb on - strand, within HMPREF1058_RS17925 at 299.978 kb on - strand, within HMPREF1058_RS17925 at 299.979 kb on + strand, within HMPREF1058_RS17925 at 300.021 kb on + strand, within HMPREF1058_RS17925 at 300.043 kb on + strand, within HMPREF1058_RS17925 at 300.058 kb on + strand, within HMPREF1058_RS17925 at 300.060 kb on + strand, within HMPREF1058_RS17925 at 300.123 kb on + strand, within HMPREF1058_RS17925 at 300.151 kb on - strand, within HMPREF1058_RS17925 at 300.152 kb on + strand, within HMPREF1058_RS17925 at 300.452 kb on + strand at 300.481 kb on - strand at 300.481 kb on - strand at 300.524 kb on + strand at 300.525 kb on - strand at 300.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 296,613 + HMPREF1058_RS17935 0.24 -2.9 296,613 + HMPREF1058_RS17935 0.24 -1.2 296,630 - HMPREF1058_RS17935 0.25 -0.5 296,800 + HMPREF1058_RS17935 0.39 -1.9 296,991 - HMPREF1058_RS17935 0.54 -1.0 296,991 - HMPREF1058_RS17935 0.54 -0.7 296,994 - HMPREF1058_RS17935 0.54 -2.5 297,031 + HMPREF1058_RS17935 0.57 -0.5 297,031 + HMPREF1058_RS17935 0.57 -0.2 297,031 + HMPREF1058_RS17935 0.57 -1.1 297,031 + HMPREF1058_RS17935 0.57 -0.3 297,032 - HMPREF1058_RS17935 0.57 -1.5 297,033 + HMPREF1058_RS17935 0.57 -0.5 297,034 - HMPREF1058_RS17935 0.57 -0.8 297,034 - HMPREF1058_RS17935 0.57 +0.4 297,034 - HMPREF1058_RS17935 0.57 +0.8 297,204 - HMPREF1058_RS17935 0.71 -2.2 297,261 - HMPREF1058_RS17935 0.75 -1.0 297,284 + HMPREF1058_RS17935 0.77 -0.9 297,284 + HMPREF1058_RS17935 0.77 -1.2 297,284 + HMPREF1058_RS17935 0.77 -2.6 297,285 - HMPREF1058_RS17935 0.77 +0.0 297,285 - HMPREF1058_RS17935 0.77 -1.5 297,286 + HMPREF1058_RS17935 0.77 -0.3 297,301 + HMPREF1058_RS17935 0.78 -1.2 297,302 - HMPREF1058_RS17935 0.78 -0.9 297,302 - HMPREF1058_RS17935 0.78 -0.4 297,302 - HMPREF1058_RS17935 0.78 -0.2 297,306 - HMPREF1058_RS17935 0.79 +2.0 297,306 - HMPREF1058_RS17935 0.79 -1.0 297,322 + HMPREF1058_RS17935 0.80 -0.7 297,360 + HMPREF1058_RS17935 0.83 +1.3 297,364 + HMPREF1058_RS17935 0.83 -1.6 297,364 + HMPREF1058_RS17935 0.83 +0.8 297,370 + HMPREF1058_RS17935 0.84 +0.9 297,371 - HMPREF1058_RS17935 0.84 -1.1 297,412 - HMPREF1058_RS17935 0.87 +0.0 297,414 - HMPREF1058_RS17935 0.87 -1.6 297,501 + +0.1 297,508 + -0.9 297,508 + -0.6 297,595 - +2.4 297,600 + +1.0 297,646 + -1.0 297,704 + -0.9 297,706 + -0.4 297,707 - +0.1 297,715 + -1.6 297,785 - HMPREF1058_RS17930 0.10 +3.0 297,787 - HMPREF1058_RS17930 0.10 -0.2 297,787 - HMPREF1058_RS17930 0.10 +0.6 297,790 + HMPREF1058_RS17930 0.10 -0.3 297,799 - HMPREF1058_RS17930 0.11 +0.9 297,810 + HMPREF1058_RS17930 0.11 -1.9 297,811 - HMPREF1058_RS17930 0.11 +0.6 297,849 + HMPREF1058_RS17930 0.13 -0.8 297,856 - HMPREF1058_RS17930 0.14 +0.9 297,883 - HMPREF1058_RS17930 0.15 +0.1 297,938 - +4.8 298,011 - HMPREF1058_RS17930 0.22 +0.8 298,015 + HMPREF1058_RS17930 0.22 -1.7 298,016 - HMPREF1058_RS17930 0.22 +1.0 298,051 + HMPREF1058_RS17930 0.24 -0.4 298,065 + HMPREF1058_RS17930 0.24 -3.0 298,077 + HMPREF1058_RS17930 0.25 -1.5 298,084 - HMPREF1058_RS17930 0.25 +2.4 298,133 + HMPREF1058_RS17930 0.28 -2.2 298,190 - HMPREF1058_RS17930 0.31 +1.0 298,220 - HMPREF1058_RS17930 0.32 -1.4 298,234 - HMPREF1058_RS17930 0.33 +0.0 298,444 + HMPREF1058_RS17930 0.44 -0.8 298,489 - HMPREF1058_RS17930 0.46 +2.0 298,609 + HMPREF1058_RS17930 0.52 +0.2 298,610 - HMPREF1058_RS17930 0.53 +1.2 298,610 - HMPREF1058_RS17930 0.53 +0.9 298,703 + HMPREF1058_RS17930 0.57 -0.7 298,723 + HMPREF1058_RS17930 0.58 +0.4 298,774 + HMPREF1058_RS17930 0.61 +0.2 298,830 - HMPREF1058_RS17930 0.64 +2.0 298,830 - HMPREF1058_RS17930 0.64 +1.3 298,964 - HMPREF1058_RS17930 0.71 +0.7 298,966 - HMPREF1058_RS17930 0.71 +1.0 298,966 - HMPREF1058_RS17930 0.71 -0.6 298,966 - HMPREF1058_RS17930 0.71 +0.6 298,968 - HMPREF1058_RS17930 0.71 +2.0 299,053 + HMPREF1058_RS17930 0.75 +0.4 299,056 - HMPREF1058_RS17930 0.76 -0.0 299,101 + HMPREF1058_RS17930 0.78 +2.4 299,129 - HMPREF1058_RS17930 0.79 +2.0 299,130 + HMPREF1058_RS17930 0.79 -0.7 299,204 + HMPREF1058_RS17930 0.83 -0.8 299,205 - +0.7 299,205 - HMPREF1058_RS17930 0.83 +2.2 299,207 - HMPREF1058_RS17930 0.83 +2.0 299,207 - HMPREF1058_RS17930 0.83 +1.5 299,212 + HMPREF1058_RS17930 0.84 -0.3 299,244 + HMPREF1058_RS17930 0.85 -1.2 299,244 + HMPREF1058_RS17930 0.85 -0.5 299,245 - HMPREF1058_RS17930 0.85 +1.8 299,245 - HMPREF1058_RS17930 0.85 +1.6 299,245 - HMPREF1058_RS17930 0.85 +2.4 299,245 - HMPREF1058_RS17930 0.85 +0.8 299,265 + HMPREF1058_RS17930 0.86 -0.6 299,281 - HMPREF1058_RS17930 0.87 +1.2 299,318 + HMPREF1058_RS17930 0.89 -0.1 299,348 + -0.5 299,348 + -1.6 299,349 - +0.7 299,349 - +0.9 299,349 - +0.6 299,431 + +0.2 299,520 - +1.5 299,520 - +0.3 299,530 + -0.5 299,531 - +0.9 299,531 - +0.5 299,542 + -2.6 299,677 - +1.6 299,679 + -2.6 299,699 - -2.8 299,834 + HMPREF1058_RS17925 0.18 -1.4 299,856 + HMPREF1058_RS17925 0.22 -0.0 299,905 - HMPREF1058_RS17925 0.29 -0.1 299,938 - HMPREF1058_RS17925 0.34 +1.0 299,978 - HMPREF1058_RS17925 0.40 +1.0 299,979 + HMPREF1058_RS17925 0.40 +1.1 300,021 + HMPREF1058_RS17925 0.47 +0.4 300,043 + HMPREF1058_RS17925 0.50 -0.3 300,058 + HMPREF1058_RS17925 0.52 -1.1 300,060 + HMPREF1058_RS17925 0.52 +0.7 300,123 + HMPREF1058_RS17925 0.62 -0.7 300,151 - HMPREF1058_RS17925 0.66 -1.4 300,152 + HMPREF1058_RS17925 0.66 +0.0 300,452 + -0.2 300,481 - +0.4 300,481 - +1.0 300,524 + +0.4 300,525 - -0.2 300,529 + +0.1
Or see this region's nucleotide sequence