Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17915 and HMPREF1058_RS17910 are separated by 12 nucleotides HMPREF1058_RS17910 and HMPREF1058_RS17905 are separated by 176 nucleotides HMPREF1058_RS17905 and HMPREF1058_RS17900 are separated by 20 nucleotides
HMPREF1058_RS17915: HMPREF1058_RS17915 - PspC domain-containing protein, at 302,126 to 303,172
_RS17915
HMPREF1058_RS17910: HMPREF1058_RS17910 - PadR family transcriptional regulator, at 303,185 to 303,511
_RS17910
HMPREF1058_RS17905: HMPREF1058_RS17905 - GNAT family N-acetyltransferase, at 303,688 to 304,185
_RS17905
HMPREF1058_RS17900: HMPREF1058_RS17900 - DNA alkylation repair protein, at 304,206 to 304,922
_RS17900
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.210 kb on + strand at 302.222 kb on - strand at 302.392 kb on - strand, within HMPREF1058_RS17915 at 302.463 kb on - strand, within HMPREF1058_RS17915 at 302.471 kb on + strand, within HMPREF1058_RS17915 at 302.564 kb on - strand, within HMPREF1058_RS17915 at 302.589 kb on + strand, within HMPREF1058_RS17915 at 302.589 kb on + strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.701 kb on + strand, within HMPREF1058_RS17915 at 302.716 kb on + strand, within HMPREF1058_RS17915 at 302.717 kb on - strand, within HMPREF1058_RS17915 at 302.760 kb on - strand, within HMPREF1058_RS17915 at 302.767 kb on + strand at 302.768 kb on - strand, within HMPREF1058_RS17915 at 302.796 kb on + strand, within HMPREF1058_RS17915 at 302.797 kb on - strand, within HMPREF1058_RS17915 at 302.825 kb on + strand, within HMPREF1058_RS17915 at 302.829 kb on - strand, within HMPREF1058_RS17915 at 302.829 kb on - strand, within HMPREF1058_RS17915 at 302.833 kb on + strand, within HMPREF1058_RS17915 at 302.972 kb on - strand, within HMPREF1058_RS17915 at 303.019 kb on + strand, within HMPREF1058_RS17915 at 303.020 kb on - strand, within HMPREF1058_RS17915 at 303.023 kb on + strand, within HMPREF1058_RS17915 at 303.023 kb on + strand, within HMPREF1058_RS17915 at 303.024 kb on - strand, within HMPREF1058_RS17915 at 303.030 kb on - strand, within HMPREF1058_RS17915 at 303.090 kb on - strand at 303.093 kb on + strand at 303.094 kb on - strand at 303.128 kb on - strand at 303.128 kb on - strand at 303.130 kb on - strand at 303.175 kb on + strand at 303.277 kb on + strand, within HMPREF1058_RS17910 at 303.283 kb on - strand, within HMPREF1058_RS17910 at 303.377 kb on + strand, within HMPREF1058_RS17910 at 303.453 kb on - strand, within HMPREF1058_RS17910 at 303.601 kb on + strand at 303.663 kb on - strand at 303.671 kb on - strand at 303.680 kb on + strand at 303.721 kb on - strand at 303.799 kb on + strand, within HMPREF1058_RS17905 at 303.817 kb on + strand, within HMPREF1058_RS17905 at 303.818 kb on - strand, within HMPREF1058_RS17905 at 303.818 kb on - strand, within HMPREF1058_RS17905 at 303.865 kb on + strand, within HMPREF1058_RS17905 at 303.865 kb on + strand, within HMPREF1058_RS17905 at 303.866 kb on - strand, within HMPREF1058_RS17905 at 303.868 kb on + strand, within HMPREF1058_RS17905 at 303.868 kb on + strand, within HMPREF1058_RS17905 at 303.868 kb on + strand, within HMPREF1058_RS17905 at 303.869 kb on - strand, within HMPREF1058_RS17905 at 303.872 kb on + strand, within HMPREF1058_RS17905 at 303.873 kb on - strand, within HMPREF1058_RS17905 at 303.877 kb on + strand, within HMPREF1058_RS17905 at 303.878 kb on - strand, within HMPREF1058_RS17905 at 303.878 kb on - strand, within HMPREF1058_RS17905 at 303.953 kb on - strand, within HMPREF1058_RS17905 at 303.956 kb on + strand, within HMPREF1058_RS17905 at 303.957 kb on - strand, within HMPREF1058_RS17905 at 304.136 kb on + strand at 304.152 kb on + strand at 304.153 kb on - strand at 304.153 kb on - strand at 304.153 kb on - strand at 304.164 kb on + strand at 304.189 kb on + strand at 304.238 kb on - strand at 304.383 kb on + strand, within HMPREF1058_RS17900 at 304.384 kb on - strand, within HMPREF1058_RS17900 at 304.401 kb on - strand, within HMPREF1058_RS17900 at 304.405 kb on - strand, within HMPREF1058_RS17900 at 304.407 kb on + strand, within HMPREF1058_RS17900 at 304.409 kb on + strand, within HMPREF1058_RS17900 at 304.421 kb on + strand, within HMPREF1058_RS17900 at 304.421 kb on + strand, within HMPREF1058_RS17900 at 304.421 kb on + strand, within HMPREF1058_RS17900 at 304.422 kb on - strand, within HMPREF1058_RS17900 at 304.422 kb on - strand, within HMPREF1058_RS17900 at 304.426 kb on + strand, within HMPREF1058_RS17900 at 304.439 kb on - strand, within HMPREF1058_RS17900 at 304.442 kb on - strand, within HMPREF1058_RS17900 at 304.474 kb on - strand, within HMPREF1058_RS17900 at 304.497 kb on - strand, within HMPREF1058_RS17900
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 302,210 + +0.9 302,222 - -0.4 302,392 - HMPREF1058_RS17915 0.25 +0.8 302,463 - HMPREF1058_RS17915 0.32 +0.4 302,471 + HMPREF1058_RS17915 0.33 +0.2 302,564 - HMPREF1058_RS17915 0.42 -0.2 302,589 + HMPREF1058_RS17915 0.44 +1.3 302,589 + HMPREF1058_RS17915 0.44 -0.8 302,633 - HMPREF1058_RS17915 0.48 +0.9 302,633 - HMPREF1058_RS17915 0.48 -0.2 302,633 - HMPREF1058_RS17915 0.48 +0.6 302,701 + HMPREF1058_RS17915 0.55 -0.1 302,716 + HMPREF1058_RS17915 0.56 +1.7 302,717 - HMPREF1058_RS17915 0.56 -0.5 302,760 - HMPREF1058_RS17915 0.61 +0.3 302,767 + +0.0 302,768 - HMPREF1058_RS17915 0.61 -0.2 302,796 + HMPREF1058_RS17915 0.64 -1.1 302,797 - HMPREF1058_RS17915 0.64 -0.3 302,825 + HMPREF1058_RS17915 0.67 -1.9 302,829 - HMPREF1058_RS17915 0.67 -0.9 302,829 - HMPREF1058_RS17915 0.67 -0.5 302,833 + HMPREF1058_RS17915 0.68 +1.0 302,972 - HMPREF1058_RS17915 0.81 +0.5 303,019 + HMPREF1058_RS17915 0.85 +0.5 303,020 - HMPREF1058_RS17915 0.85 +1.6 303,023 + HMPREF1058_RS17915 0.86 -1.9 303,023 + HMPREF1058_RS17915 0.86 -0.1 303,024 - HMPREF1058_RS17915 0.86 -0.2 303,030 - HMPREF1058_RS17915 0.86 +0.3 303,090 - -1.1 303,093 + -1.0 303,094 - -0.7 303,128 - -0.7 303,128 - -0.1 303,130 - +0.3 303,175 + +1.7 303,277 + HMPREF1058_RS17910 0.28 +0.3 303,283 - HMPREF1058_RS17910 0.30 +0.8 303,377 + HMPREF1058_RS17910 0.59 +1.3 303,453 - HMPREF1058_RS17910 0.82 +0.9 303,601 + +0.5 303,663 - +0.7 303,671 - +0.3 303,680 + +1.4 303,721 - -0.3 303,799 + HMPREF1058_RS17905 0.22 +0.1 303,817 + HMPREF1058_RS17905 0.26 -0.6 303,818 - HMPREF1058_RS17905 0.26 +1.0 303,818 - HMPREF1058_RS17905 0.26 +1.1 303,865 + HMPREF1058_RS17905 0.36 -0.4 303,865 + HMPREF1058_RS17905 0.36 +0.3 303,866 - HMPREF1058_RS17905 0.36 -0.4 303,868 + HMPREF1058_RS17905 0.36 -0.8 303,868 + HMPREF1058_RS17905 0.36 -0.6 303,868 + HMPREF1058_RS17905 0.36 -1.4 303,869 - HMPREF1058_RS17905 0.36 +1.5 303,872 + HMPREF1058_RS17905 0.37 +0.4 303,873 - HMPREF1058_RS17905 0.37 +2.0 303,877 + HMPREF1058_RS17905 0.38 -0.8 303,878 - HMPREF1058_RS17905 0.38 -0.8 303,878 - HMPREF1058_RS17905 0.38 +1.3 303,953 - HMPREF1058_RS17905 0.53 -0.8 303,956 + HMPREF1058_RS17905 0.54 +0.3 303,957 - HMPREF1058_RS17905 0.54 +0.6 304,136 + -0.5 304,152 + -0.1 304,153 - -0.4 304,153 - +0.3 304,153 - +0.3 304,164 + +0.1 304,189 + +1.4 304,238 - -0.3 304,383 + HMPREF1058_RS17900 0.25 -0.6 304,384 - HMPREF1058_RS17900 0.25 -0.7 304,401 - HMPREF1058_RS17900 0.27 +0.7 304,405 - HMPREF1058_RS17900 0.28 -0.3 304,407 + HMPREF1058_RS17900 0.28 -0.2 304,409 + HMPREF1058_RS17900 0.28 +0.2 304,421 + HMPREF1058_RS17900 0.30 -0.7 304,421 + HMPREF1058_RS17900 0.30 -1.2 304,421 + HMPREF1058_RS17900 0.30 +0.1 304,422 - HMPREF1058_RS17900 0.30 +0.7 304,422 - HMPREF1058_RS17900 0.30 -1.4 304,426 + HMPREF1058_RS17900 0.31 -0.5 304,439 - HMPREF1058_RS17900 0.32 +0.4 304,442 - HMPREF1058_RS17900 0.33 -0.9 304,474 - HMPREF1058_RS17900 0.37 +0.8 304,497 - HMPREF1058_RS17900 0.41 +0.2
Or see this region's nucleotide sequence