Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17860

Experiment: Xylan from corn core 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17870 and HMPREF1058_RS17865 overlap by 35 nucleotidesHMPREF1058_RS17865 and HMPREF1058_RS17860 are separated by 85 nucleotidesHMPREF1058_RS17860 and HMPREF1058_RS17855 are separated by 33 nucleotides HMPREF1058_RS17870: HMPREF1058_RS17870 - metallophosphoesterase, at 311,362 to 312,168 _RS17870 HMPREF1058_RS17865: HMPREF1058_RS17865 - hypothetical protein, at 312,134 to 312,895 _RS17865 HMPREF1058_RS17860: HMPREF1058_RS17860 - oligopeptide transporter, OPT family, at 312,981 to 314,972 _RS17860 HMPREF1058_RS17855: HMPREF1058_RS17855 - alpha/beta hydrolase, at 315,006 to 315,851 _RS17855 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -1 0 1 2at 312.023 kb on - strand, within HMPREF1058_RS17870at 312.057 kb on - strand, within HMPREF1058_RS17870at 312.096 kb on - strandat 312.109 kb on + strandat 312.113 kb on + strandat 312.113 kb on + strandat 312.114 kb on - strandat 312.114 kb on - strandat 312.186 kb on + strandat 312.187 kb on - strandat 312.208 kb on + strandat 312.264 kb on + strand, within HMPREF1058_RS17865at 312.264 kb on + strand, within HMPREF1058_RS17865at 312.264 kb on + strand, within HMPREF1058_RS17865at 312.264 kb on + strand, within HMPREF1058_RS17865at 312.265 kb on - strand, within HMPREF1058_RS17865at 312.304 kb on + strand, within HMPREF1058_RS17865at 312.335 kb on - strand, within HMPREF1058_RS17865at 312.339 kb on - strand, within HMPREF1058_RS17865at 312.339 kb on - strand, within HMPREF1058_RS17865at 312.402 kb on + strand, within HMPREF1058_RS17865at 312.407 kb on + strand, within HMPREF1058_RS17865at 312.551 kb on + strandat 312.554 kb on - strand, within HMPREF1058_RS17865at 312.565 kb on + strand, within HMPREF1058_RS17865at 312.565 kb on + strand, within HMPREF1058_RS17865at 312.709 kb on + strand, within HMPREF1058_RS17865at 312.836 kb on + strandat 312.836 kb on + strandat 312.865 kb on - strandat 312.889 kb on - strandat 312.943 kb on + strandat 312.944 kb on - strandat 313.093 kb on + strandat 313.099 kb on + strandat 313.100 kb on - strandat 313.155 kb on + strandat 313.335 kb on + strand, within HMPREF1058_RS17860at 313.337 kb on + strand, within HMPREF1058_RS17860at 313.338 kb on - strandat 313.338 kb on - strand, within HMPREF1058_RS17860at 313.354 kb on - strand, within HMPREF1058_RS17860at 313.565 kb on - strandat 313.568 kb on - strand, within HMPREF1058_RS17860at 313.592 kb on - strand, within HMPREF1058_RS17860at 313.703 kb on - strand, within HMPREF1058_RS17860at 313.716 kb on + strand, within HMPREF1058_RS17860at 313.717 kb on - strand, within HMPREF1058_RS17860at 313.719 kb on - strand, within HMPREF1058_RS17860at 313.768 kb on + strand, within HMPREF1058_RS17860at 313.791 kb on - strand, within HMPREF1058_RS17860at 313.875 kb on - strand, within HMPREF1058_RS17860at 313.876 kb on + strand, within HMPREF1058_RS17860at 313.876 kb on + strand, within HMPREF1058_RS17860at 313.887 kb on + strand, within HMPREF1058_RS17860at 313.958 kb on + strand, within HMPREF1058_RS17860at 314.093 kb on - strand, within HMPREF1058_RS17860at 314.131 kb on + strand, within HMPREF1058_RS17860at 314.132 kb on - strand, within HMPREF1058_RS17860at 314.219 kb on + strand, within HMPREF1058_RS17860at 314.352 kb on - strand, within HMPREF1058_RS17860at 314.493 kb on + strandat 314.552 kb on - strand, within HMPREF1058_RS17860at 314.628 kb on + strand, within HMPREF1058_RS17860at 314.916 kb on + strandat 314.916 kb on + strandat 314.917 kb on - strandat 314.918 kb on + strandat 314.932 kb on + strandat 315.053 kb on - strandat 315.070 kb on + strandat 315.083 kb on - strandat 315.176 kb on + strand, within HMPREF1058_RS17855at 315.237 kb on + strand, within HMPREF1058_RS17855at 315.241 kb on + strand, within HMPREF1058_RS17855at 315.241 kb on + strand, within HMPREF1058_RS17855at 315.241 kb on + strand, within HMPREF1058_RS17855at 315.242 kb on - strand, within HMPREF1058_RS17855at 315.242 kb on - strand, within HMPREF1058_RS17855at 315.242 kb on - strand, within HMPREF1058_RS17855at 315.242 kb on - strand, within HMPREF1058_RS17855at 315.273 kb on - strand, within HMPREF1058_RS17855at 315.274 kb on + strand, within HMPREF1058_RS17855at 315.314 kb on - strand, within HMPREF1058_RS17855at 315.314 kb on - strand, within HMPREF1058_RS17855at 315.349 kb on + strand, within HMPREF1058_RS17855at 315.350 kb on - strand, within HMPREF1058_RS17855at 315.479 kb on + strand, within HMPREF1058_RS17855at 315.480 kb on - strand, within HMPREF1058_RS17855at 315.706 kb on - strand, within HMPREF1058_RS17855at 315.754 kb on - strand, within HMPREF1058_RS17855at 315.754 kb on - strand, within HMPREF1058_RS17855at 315.795 kb on - strandat 315.799 kb on - strandat 315.800 kb on + strandat 315.909 kb on - strandat 315.909 kb on - strandat 315.917 kb on + strandat 315.918 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
remove
312,023 - HMPREF1058_RS17870 0.82 +0.4
312,057 - HMPREF1058_RS17870 0.86 +1.7
312,096 - +0.2
312,109 + +0.4
312,113 + +0.4
312,113 + -1.1
312,114 - +0.2
312,114 - +0.7
312,186 + +1.2
312,187 - -0.7
312,208 + +0.2
312,264 + HMPREF1058_RS17865 0.17 +0.2
312,264 + HMPREF1058_RS17865 0.17 +0.4
312,264 + HMPREF1058_RS17865 0.17 +0.5
312,264 + HMPREF1058_RS17865 0.17 +0.6
312,265 - HMPREF1058_RS17865 0.17 -0.4
312,304 + HMPREF1058_RS17865 0.22 +1.6
312,335 - HMPREF1058_RS17865 0.26 +1.5
312,339 - HMPREF1058_RS17865 0.27 -0.6
312,339 - HMPREF1058_RS17865 0.27 +0.5
312,402 + HMPREF1058_RS17865 0.35 +1.0
312,407 + HMPREF1058_RS17865 0.36 +0.3
312,551 + +1.3
312,554 - HMPREF1058_RS17865 0.55 +0.7
312,565 + HMPREF1058_RS17865 0.57 -0.2
312,565 + HMPREF1058_RS17865 0.57 -0.7
312,709 + HMPREF1058_RS17865 0.75 +1.2
312,836 + +0.4
312,836 + -0.2
312,865 - +0.9
312,889 - -0.9
312,943 + -0.7
312,944 - -0.3
313,093 + +0.4
313,099 + -1.1
313,100 - +0.4
313,155 + +1.2
313,335 + HMPREF1058_RS17860 0.18 +0.5
313,337 + HMPREF1058_RS17860 0.18 +1.3
313,338 - +1.0
313,338 - HMPREF1058_RS17860 0.18 -0.6
313,354 - HMPREF1058_RS17860 0.19 +0.4
313,565 - -0.9
313,568 - HMPREF1058_RS17860 0.29 +2.5
313,592 - HMPREF1058_RS17860 0.31 +1.3
313,703 - HMPREF1058_RS17860 0.36 +1.5
313,716 + HMPREF1058_RS17860 0.37 +2.6
313,717 - HMPREF1058_RS17860 0.37 +0.6
313,719 - HMPREF1058_RS17860 0.37 +1.1
313,768 + HMPREF1058_RS17860 0.40 +0.6
313,791 - HMPREF1058_RS17860 0.41 -0.3
313,875 - HMPREF1058_RS17860 0.45 +0.9
313,876 + HMPREF1058_RS17860 0.45 -1.0
313,876 + HMPREF1058_RS17860 0.45 -0.2
313,887 + HMPREF1058_RS17860 0.45 -0.6
313,958 + HMPREF1058_RS17860 0.49 -0.0
314,093 - HMPREF1058_RS17860 0.56 +1.8
314,131 + HMPREF1058_RS17860 0.58 +0.0
314,132 - HMPREF1058_RS17860 0.58 +0.1
314,219 + HMPREF1058_RS17860 0.62 +0.1
314,352 - HMPREF1058_RS17860 0.69 -1.0
314,493 + -0.8
314,552 - HMPREF1058_RS17860 0.79 -1.7
314,628 + HMPREF1058_RS17860 0.83 +0.2
314,916 + +2.3
314,916 + +0.1
314,917 - -0.7
314,918 + +1.8
314,932 + -0.3
315,053 - -0.3
315,070 + -0.4
315,083 - +0.6
315,176 + HMPREF1058_RS17855 0.20 -1.3
315,237 + HMPREF1058_RS17855 0.27 +0.4
315,241 + HMPREF1058_RS17855 0.28 -0.7
315,241 + HMPREF1058_RS17855 0.28 +0.1
315,241 + HMPREF1058_RS17855 0.28 -0.3
315,242 - HMPREF1058_RS17855 0.28 -1.2
315,242 - HMPREF1058_RS17855 0.28 -0.4
315,242 - HMPREF1058_RS17855 0.28 -0.3
315,242 - HMPREF1058_RS17855 0.28 -1.3
315,273 - HMPREF1058_RS17855 0.32 +0.7
315,274 + HMPREF1058_RS17855 0.32 -0.9
315,314 - HMPREF1058_RS17855 0.36 -0.8
315,314 - HMPREF1058_RS17855 0.36 +0.8
315,349 + HMPREF1058_RS17855 0.41 -0.8
315,350 - HMPREF1058_RS17855 0.41 +0.0
315,479 + HMPREF1058_RS17855 0.56 +0.6
315,480 - HMPREF1058_RS17855 0.56 -0.2
315,706 - HMPREF1058_RS17855 0.83 -1.2
315,754 - HMPREF1058_RS17855 0.88 -0.6
315,754 - HMPREF1058_RS17855 0.88 -0.7
315,795 - +0.5
315,799 - +0.5
315,800 + -1.0
315,909 - -0.4
315,909 - +0.4
315,917 + +0.5
315,918 - -0.3

Or see this region's nucleotide sequence