Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17670 and HMPREF1058_RS17665 overlap by 7 nucleotides HMPREF1058_RS17665 and HMPREF1058_RS20425 overlap by 56 nucleotides HMPREF1058_RS20425 and HMPREF1058_RS17660 are separated by 140 nucleotides HMPREF1058_RS17660 and HMPREF1058_RS17655 are separated by 70 nucleotides HMPREF1058_RS17655 and HMPREF1058_RS17650 overlap by 11 nucleotides HMPREF1058_RS17650 and HMPREF1058_RS17645 are separated by 29 nucleotides
HMPREF1058_RS17670: HMPREF1058_RS17670 - hypothetical protein, at 373,603 to 373,806
_RS17670
HMPREF1058_RS17665: HMPREF1058_RS17665 - hypothetical protein, at 373,800 to 374,003
_RS17665
HMPREF1058_RS20425: HMPREF1058_RS20425 - left-handed beta-roll domain-containing protein, at 373,948 to 374,070
_RS20425
HMPREF1058_RS17660: HMPREF1058_RS17660 - tRNA-Arg, at 374,211 to 374,284
_RS17660
HMPREF1058_RS17655: HMPREF1058_RS17655 - AbgT family transporter, at 374,355 to 375,071
_RS17655
HMPREF1058_RS17650: HMPREF1058_RS17650 - response regulator transcription factor, at 375,061 to 375,789
_RS17650
HMPREF1058_RS17645: HMPREF1058_RS17645 - DUF5113 domain-containing protein, at 375,819 to 380,216
_RS17645
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.423 kb on - strand at 373.470 kb on + strand at 373.505 kb on - strand at 373.507 kb on - strand at 373.544 kb on + strand at 373.564 kb on - strand at 373.666 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.688 kb on - strand, within HMPREF1058_RS17670 at 373.722 kb on - strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.772 kb on + strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.773 kb on - strand, within HMPREF1058_RS17670 at 373.789 kb on + strand at 373.874 kb on - strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 373.905 kb on + strand, within HMPREF1058_RS17665 at 374.105 kb on + strand at 374.105 kb on + strand at 374.105 kb on + strand at 374.108 kb on - strand at 374.108 kb on - strand at 374.431 kb on - strand, within HMPREF1058_RS17655 at 374.434 kb on + strand, within HMPREF1058_RS17655 at 374.560 kb on - strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.567 kb on + strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.642 kb on - strand, within HMPREF1058_RS17655 at 374.731 kb on - strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.735 kb on + strand, within HMPREF1058_RS17655 at 374.749 kb on - strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.750 kb on + strand, within HMPREF1058_RS17655 at 374.751 kb on - strand, within HMPREF1058_RS17655 at 374.984 kb on + strand, within HMPREF1058_RS17655 at 375.055 kb on + strand at 375.084 kb on + strand at 375.290 kb on + strand, within HMPREF1058_RS17650 at 375.291 kb on - strand, within HMPREF1058_RS17650 at 375.300 kb on + strand, within HMPREF1058_RS17650 at 375.425 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.466 kb on - strand, within HMPREF1058_RS17650 at 375.514 kb on + strand, within HMPREF1058_RS17650 at 375.736 kb on + strand at 375.757 kb on + strand at 375.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 373,423 - +0.1 373,470 + +2.6 373,505 - -0.3 373,507 - +0.6 373,544 + +2.0 373,564 - +0.7 373,666 - HMPREF1058_RS17670 0.31 -1.9 373,688 - HMPREF1058_RS17670 0.42 +0.3 373,688 - HMPREF1058_RS17670 0.42 +0.7 373,688 - HMPREF1058_RS17670 0.42 +0.9 373,722 - HMPREF1058_RS17670 0.58 -0.7 373,772 + HMPREF1058_RS17670 0.83 +0.3 373,772 + HMPREF1058_RS17670 0.83 +0.2 373,772 + HMPREF1058_RS17670 0.83 +0.5 373,773 - HMPREF1058_RS17670 0.83 +0.7 373,773 - HMPREF1058_RS17670 0.83 +0.3 373,773 - HMPREF1058_RS17670 0.83 +1.7 373,789 + +1.2 373,874 - HMPREF1058_RS17665 0.36 -1.0 373,905 + HMPREF1058_RS17665 0.51 -0.4 373,905 + HMPREF1058_RS17665 0.51 -1.3 374,105 + +0.1 374,105 + -1.0 374,105 + -0.2 374,108 - -1.8 374,108 - +0.3 374,431 - HMPREF1058_RS17655 0.11 +0.3 374,434 + HMPREF1058_RS17655 0.11 +0.6 374,560 - HMPREF1058_RS17655 0.29 +0.2 374,567 + HMPREF1058_RS17655 0.30 -0.4 374,567 + HMPREF1058_RS17655 0.30 +1.6 374,642 - HMPREF1058_RS17655 0.40 +1.8 374,642 - HMPREF1058_RS17655 0.40 -0.5 374,731 - HMPREF1058_RS17655 0.52 +1.7 374,735 + HMPREF1058_RS17655 0.53 +2.0 374,735 + HMPREF1058_RS17655 0.53 +1.2 374,749 - HMPREF1058_RS17655 0.55 +0.9 374,750 + HMPREF1058_RS17655 0.55 -0.8 374,750 + HMPREF1058_RS17655 0.55 +1.0 374,751 - HMPREF1058_RS17655 0.55 +2.0 374,984 + HMPREF1058_RS17655 0.88 +0.5 375,055 + +1.2 375,084 + -0.7 375,290 + HMPREF1058_RS17650 0.31 -1.4 375,291 - HMPREF1058_RS17650 0.32 -0.7 375,300 + HMPREF1058_RS17650 0.33 -0.3 375,425 - HMPREF1058_RS17650 0.50 +0.9 375,466 - HMPREF1058_RS17650 0.56 +0.5 375,466 - HMPREF1058_RS17650 0.56 -0.6 375,514 + HMPREF1058_RS17650 0.62 -1.2 375,736 + -1.8 375,757 + +2.0 375,792 + +0.2
Or see this region's nucleotide sequence