Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119345 and HMPREF1058_RS17540 overlap by 59 nucleotides HMPREF1058_RS17540 and HMPREF1058_RS17535 are separated by 485 nucleotides HMPREF1058_RS17535 and HMPREF1058_RS17530 are separated by 11 nucleotides
HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445
_RS0119345
HMPREF1058_RS17540: HMPREF1058_RS17540 - 6-bladed beta-propeller, at 403,387 to 403,839
_RS17540
HMPREF1058_RS17535: HMPREF1058_RS17535 - IS21-like element helper ATPase IstB, at 404,325 to 405,113
_RS17535
HMPREF1058_RS17530: HMPREF1058_RS17530 - IS21 family transposase, at 405,125 to 406,690
_RS17530
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.370 kb on + strand at 403.380 kb on + strand at 403.381 kb on - strand at 403.388 kb on + strand at 403.391 kb on - strand at 403.419 kb on + strand at 403.422 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.425 kb on - strand at 403.426 kb on + strand at 403.427 kb on - strand at 403.427 kb on - strand at 403.428 kb on + strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.430 kb on + strand at 403.431 kb on - strand at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.466 kb on + strand, within HMPREF1058_RS17540 at 403.504 kb on + strand, within HMPREF1058_RS17540 at 403.550 kb on + strand, within HMPREF1058_RS17540 at 403.551 kb on - strand, within HMPREF1058_RS17540 at 403.703 kb on - strand, within HMPREF1058_RS17540 at 403.711 kb on + strand, within HMPREF1058_RS17540 at 403.712 kb on - strand, within HMPREF1058_RS17540 at 403.765 kb on - strand, within HMPREF1058_RS17540 at 403.767 kb on + strand, within HMPREF1058_RS17540 at 403.768 kb on - strand, within HMPREF1058_RS17540 at 403.770 kb on + strand, within HMPREF1058_RS17540 at 403.801 kb on + strand at 403.801 kb on + strand at 403.804 kb on - strand at 403.812 kb on - strand at 403.872 kb on + strand at 403.893 kb on + strand at 403.916 kb on - strand at 403.993 kb on - strand at 403.993 kb on - strand at 403.997 kb on - strand at 404.038 kb on + strand at 404.038 kb on + strand at 404.039 kb on - strand at 404.039 kb on - strand at 404.044 kb on - strand at 404.049 kb on + strand at 404.062 kb on - strand at 404.086 kb on - strand at 404.086 kb on - strand at 404.115 kb on - strand at 404.162 kb on + strand at 404.173 kb on + strand at 404.624 kb on + strand, within HMPREF1058_RS17535 at 404.631 kb on + strand, within HMPREF1058_RS17535 at 405.529 kb on - strand, within HMPREF1058_RS17530
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 403,370 + -0.1 403,380 + -0.9 403,381 - -0.2 403,388 + -0.1 403,391 - +0.3 403,419 + -0.2 403,422 + -1.0 403,424 + -0.1 403,424 + +0.7 403,424 + +0.0 403,424 + +0.7 403,425 - +0.5 403,426 + -0.5 403,427 - -1.1 403,427 - +0.2 403,428 + -0.3 403,429 - -1.9 403,429 - +0.4 403,429 - -0.4 403,430 + +1.8 403,431 - +2.0 403,464 + HMPREF1058_RS17540 0.17 -0.2 403,464 + HMPREF1058_RS17540 0.17 -0.8 403,466 + HMPREF1058_RS17540 0.17 +0.5 403,504 + HMPREF1058_RS17540 0.26 +0.1 403,550 + HMPREF1058_RS17540 0.36 -1.0 403,551 - HMPREF1058_RS17540 0.36 +0.5 403,703 - HMPREF1058_RS17540 0.70 +1.7 403,711 + HMPREF1058_RS17540 0.72 -0.4 403,712 - HMPREF1058_RS17540 0.72 -0.0 403,765 - HMPREF1058_RS17540 0.83 -0.6 403,767 + HMPREF1058_RS17540 0.84 -0.5 403,768 - HMPREF1058_RS17540 0.84 +0.8 403,770 + HMPREF1058_RS17540 0.85 +0.8 403,801 + +0.0 403,801 + +0.7 403,804 - +0.3 403,812 - -0.1 403,872 + +1.5 403,893 + +1.0 403,916 - +1.8 403,993 - -2.6 403,993 - -0.1 403,997 - +0.5 404,038 + -1.8 404,038 + -0.3 404,039 - +0.2 404,039 - +0.0 404,044 - +0.2 404,049 + +1.9 404,062 - -0.5 404,086 - -0.2 404,086 - -0.0 404,115 - +0.0 404,162 + +1.8 404,173 + +1.6 404,624 + HMPREF1058_RS17535 0.38 +0.4 404,631 + HMPREF1058_RS17535 0.39 +0.6 405,529 - HMPREF1058_RS17530 0.26 +0.2
Or see this region's nucleotide sequence