Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17395 and HMPREF1058_RS21415 overlap by 4 nucleotides HMPREF1058_RS21415 and HMPREF1058_RS17390 are separated by 40 nucleotides HMPREF1058_RS17390 and HMPREF1058_RS17385 are separated by 248 nucleotides HMPREF1058_RS17385 and HMPREF1058_RS17380 are separated by 150 nucleotides
HMPREF1058_RS17395: HMPREF1058_RS17395 - N-acetylmuramoyl-L-alanine amidase, at 454,963 to 455,412
_RS17395
HMPREF1058_RS21415: HMPREF1058_RS21415 - smalltalk protein, at 455,409 to 455,510
_RS21415
HMPREF1058_RS17390: HMPREF1058_RS17390 - HU family DNA-binding protein, at 455,551 to 455,979
_RS17390
HMPREF1058_RS17385: HMPREF1058_RS17385 - DUF4248 domain-containing protein, at 456,228 to 456,458
_RS17385
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.501 kb on + strand at 455.553 kb on - strand at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.756 kb on - strand, within HMPREF1058_RS17390 at 455.879 kb on - strand, within HMPREF1058_RS17390 at 456.265 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.292 kb on - strand, within HMPREF1058_RS17385 at 456.433 kb on + strand, within HMPREF1058_RS17385 at 456.456 kb on + strand at 456.463 kb on + strand at 456.463 kb on + strand at 456.587 kb on + strand at 456.656 kb on + strand at 456.656 kb on + strand at 456.657 kb on - strand at 456.657 kb on - strand at 456.704 kb on - strand at 456.842 kb on + strand at 456.944 kb on + strand, within HMPREF1058_RS17380 at 456.945 kb on - strand, within HMPREF1058_RS17380 at 456.965 kb on + strand at 457.056 kb on + strand, within HMPREF1058_RS17380 at 457.056 kb on + strand, within HMPREF1058_RS17380 at 457.057 kb on - strand, within HMPREF1058_RS17380 at 457.069 kb on + strand, within HMPREF1058_RS17380 at 457.088 kb on + strand, within HMPREF1058_RS17380 at 457.148 kb on + strand, within HMPREF1058_RS17380 at 457.229 kb on + strand, within HMPREF1058_RS17380 at 457.255 kb on + strand, within HMPREF1058_RS17380 at 457.255 kb on + strand, within HMPREF1058_RS17380 at 457.273 kb on + strand, within HMPREF1058_RS17380 at 457.273 kb on + strand, within HMPREF1058_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 455,501 + +0.9 455,553 - +0.5 455,687 + HMPREF1058_RS17390 0.32 +0.5 455,687 + HMPREF1058_RS17390 0.32 +2.0 455,688 - HMPREF1058_RS17390 0.32 +0.5 455,688 - HMPREF1058_RS17390 0.32 -0.7 455,688 - HMPREF1058_RS17390 0.32 -0.5 455,756 - HMPREF1058_RS17390 0.48 +0.2 455,879 - HMPREF1058_RS17390 0.76 -1.4 456,265 - HMPREF1058_RS17385 0.16 +0.3 456,290 - HMPREF1058_RS17385 0.27 +0.7 456,290 - HMPREF1058_RS17385 0.27 +0.9 456,290 - HMPREF1058_RS17385 0.27 -1.8 456,292 - HMPREF1058_RS17385 0.28 +1.3 456,433 + HMPREF1058_RS17385 0.89 -2.2 456,456 + -0.1 456,463 + +0.5 456,463 + -0.9 456,587 + +0.8 456,656 + +0.5 456,656 + +0.5 456,657 - +1.0 456,657 - -1.7 456,704 - +0.2 456,842 + -1.5 456,944 + HMPREF1058_RS17380 0.14 -0.5 456,945 - HMPREF1058_RS17380 0.14 -0.0 456,965 + +1.8 457,056 + HMPREF1058_RS17380 0.19 +0.5 457,056 + HMPREF1058_RS17380 0.19 +2.5 457,057 - HMPREF1058_RS17380 0.19 -0.5 457,069 + HMPREF1058_RS17380 0.19 +0.8 457,088 + HMPREF1058_RS17380 0.20 -0.4 457,148 + HMPREF1058_RS17380 0.23 +0.6 457,229 + HMPREF1058_RS17380 0.26 -0.5 457,255 + HMPREF1058_RS17380 0.27 -0.7 457,255 + HMPREF1058_RS17380 0.27 -0.4 457,273 + HMPREF1058_RS17380 0.28 -0.3 457,273 + HMPREF1058_RS17380 0.28 -1.2
Or see this region's nucleotide sequence