Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17180 and HMPREF1058_RS17175 are separated by 158 nucleotides HMPREF1058_RS17175 and HMPREF1058_RS17170 are separated by 187 nucleotides HMPREF1058_RS17170 and HMPREF1058_RS17165 are separated by 157 nucleotides
HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866
_RS17180
HMPREF1058_RS17175: HMPREF1058_RS17175 - MarC family protein, at 509,025 to 509,627
_RS17175
HMPREF1058_RS17170: HMPREF1058_RS17170 - Crp/Fnr family transcriptional regulator, at 509,815 to 510,492
_RS17170
HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692
_RS17165
Position (kb) 509
510
511 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 508.882 kb on - strand at 508.980 kb on - strand at 508.980 kb on - strand at 508.983 kb on + strand at 508.984 kb on - strand at 509.001 kb on + strand at 509.002 kb on - strand at 509.024 kb on - strand at 509.072 kb on + strand at 509.088 kb on + strand, within HMPREF1058_RS17175 at 509.226 kb on + strand, within HMPREF1058_RS17175 at 509.236 kb on + strand, within HMPREF1058_RS17175 at 509.445 kb on - strand, within HMPREF1058_RS17175 at 509.543 kb on + strand, within HMPREF1058_RS17175 at 509.549 kb on + strand, within HMPREF1058_RS17175 at 509.561 kb on + strand, within HMPREF1058_RS17175 at 509.562 kb on - strand, within HMPREF1058_RS17175 at 509.627 kb on + strand at 509.655 kb on - strand at 509.655 kb on - strand at 509.657 kb on - strand at 509.682 kb on + strand at 509.683 kb on - strand at 509.745 kb on + strand at 509.773 kb on - strand at 509.781 kb on - strand at 509.791 kb on - strand at 509.824 kb on - strand at 509.830 kb on + strand at 509.831 kb on - strand at 509.835 kb on + strand at 509.903 kb on + strand, within HMPREF1058_RS17170 at 509.904 kb on - strand, within HMPREF1058_RS17170 at 509.984 kb on + strand, within HMPREF1058_RS17170 at 509.996 kb on + strand, within HMPREF1058_RS17170 at 510.028 kb on + strand, within HMPREF1058_RS17170 at 510.035 kb on + strand at 510.065 kb on + strand, within HMPREF1058_RS17170 at 510.100 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.137 kb on + strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.198 kb on + strand, within HMPREF1058_RS17170 at 510.207 kb on - strand, within HMPREF1058_RS17170 at 510.219 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.264 kb on - strand at 510.428 kb on + strand at 510.499 kb on - strand at 510.523 kb on + strand at 510.524 kb on - strand at 510.563 kb on - strand at 510.567 kb on - strand at 510.570 kb on - strand at 510.572 kb on - strand at 510.587 kb on + strand at 510.644 kb on - strand at 510.718 kb on + strand at 510.719 kb on - strand at 510.719 kb on - strand at 510.726 kb on + strand at 510.734 kb on + strand at 510.867 kb on + strand, within HMPREF1058_RS17165 at 511.008 kb on + strand, within HMPREF1058_RS17165 at 511.010 kb on + strand, within HMPREF1058_RS17165 at 511.070 kb on + strand, within HMPREF1058_RS17165 at 511.071 kb on - strand, within HMPREF1058_RS17165 at 511.146 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.152 kb on + strand, within HMPREF1058_RS17165 at 511.340 kb on + strand, within HMPREF1058_RS17165 at 511.373 kb on + strand, within HMPREF1058_RS17165 at 511.373 kb on + strand, within HMPREF1058_RS17165 at 511.382 kb on + strand, within HMPREF1058_RS17165 at 511.385 kb on - strand, within HMPREF1058_RS17165 at 511.385 kb on - strand, within HMPREF1058_RS17165 at 511.388 kb on - strand, within HMPREF1058_RS17165 at 511.470 kb on + strand, within HMPREF1058_RS17165 at 511.473 kb on + strand, within HMPREF1058_RS17165
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 508,882 - -1.3 508,980 - -0.8 508,980 - +0.3 508,983 + +1.1 508,984 - -0.1 509,001 + +0.4 509,002 - +1.0 509,024 - +0.2 509,072 + +0.5 509,088 + HMPREF1058_RS17175 0.10 +0.8 509,226 + HMPREF1058_RS17175 0.33 -0.1 509,236 + HMPREF1058_RS17175 0.35 -0.3 509,445 - HMPREF1058_RS17175 0.70 -0.1 509,543 + HMPREF1058_RS17175 0.86 +0.2 509,549 + HMPREF1058_RS17175 0.87 -0.0 509,561 + HMPREF1058_RS17175 0.89 +0.7 509,562 - HMPREF1058_RS17175 0.89 -0.1 509,627 + -1.7 509,655 - +2.0 509,655 - +0.1 509,657 - +2.7 509,682 + +0.8 509,683 - +1.7 509,745 + +1.5 509,773 - +1.2 509,781 - +0.6 509,791 - +0.5 509,824 - +1.9 509,830 + -0.1 509,831 - +2.6 509,835 + +2.4 509,903 + HMPREF1058_RS17170 0.13 +0.5 509,904 - HMPREF1058_RS17170 0.13 +0.1 509,984 + HMPREF1058_RS17170 0.25 +0.6 509,996 + HMPREF1058_RS17170 0.27 +0.6 510,028 + HMPREF1058_RS17170 0.31 -1.1 510,035 + +2.4 510,065 + HMPREF1058_RS17170 0.37 +0.7 510,100 + HMPREF1058_RS17170 0.42 +1.9 510,102 + HMPREF1058_RS17170 0.42 +0.6 510,102 + HMPREF1058_RS17170 0.42 +0.6 510,124 - HMPREF1058_RS17170 0.46 +0.8 510,124 - HMPREF1058_RS17170 0.46 +1.6 510,124 - HMPREF1058_RS17170 0.46 +3.6 510,137 + HMPREF1058_RS17170 0.47 +1.3 510,138 - HMPREF1058_RS17170 0.48 +2.0 510,138 - HMPREF1058_RS17170 0.48 +1.0 510,155 + HMPREF1058_RS17170 0.50 +0.5 510,155 + HMPREF1058_RS17170 0.50 +0.6 510,156 - HMPREF1058_RS17170 0.50 +0.5 510,156 - HMPREF1058_RS17170 0.50 -1.4 510,198 + HMPREF1058_RS17170 0.56 +1.0 510,207 - HMPREF1058_RS17170 0.58 +1.5 510,219 + HMPREF1058_RS17170 0.60 +1.3 510,222 + HMPREF1058_RS17170 0.60 +1.2 510,222 + HMPREF1058_RS17170 0.60 +1.0 510,263 + HMPREF1058_RS17170 0.66 +0.9 510,263 + HMPREF1058_RS17170 0.66 +2.2 510,264 - +0.0 510,428 + +1.3 510,499 - -1.1 510,523 + +0.1 510,524 - -2.2 510,563 - -0.5 510,567 - +0.5 510,570 - +1.8 510,572 - -0.7 510,587 + -0.7 510,644 - -0.3 510,718 + -0.6 510,719 - +0.5 510,719 - +0.0 510,726 + +0.3 510,734 + +1.1 510,867 + HMPREF1058_RS17165 0.11 -0.7 511,008 + HMPREF1058_RS17165 0.18 +1.4 511,010 + HMPREF1058_RS17165 0.18 +0.2 511,070 + HMPREF1058_RS17165 0.21 -1.7 511,071 - HMPREF1058_RS17165 0.21 -1.5 511,146 + HMPREF1058_RS17165 0.24 -0.6 511,152 + HMPREF1058_RS17165 0.25 -1.4 511,152 + HMPREF1058_RS17165 0.25 -0.7 511,152 + HMPREF1058_RS17165 0.25 -0.9 511,340 + HMPREF1058_RS17165 0.34 -2.3 511,373 + HMPREF1058_RS17165 0.35 -1.1 511,373 + HMPREF1058_RS17165 0.35 -2.5 511,382 + HMPREF1058_RS17165 0.36 +0.7 511,385 - HMPREF1058_RS17165 0.36 -0.3 511,385 - HMPREF1058_RS17165 0.36 -2.0 511,388 - HMPREF1058_RS17165 0.36 +1.0 511,470 + HMPREF1058_RS17165 0.40 -0.1 511,473 + HMPREF1058_RS17165 0.40 +1.0
Or see this region's nucleotide sequence