Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17170

Experiment: Xylan from corn core 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17180 and HMPREF1058_RS17175 are separated by 158 nucleotidesHMPREF1058_RS17175 and HMPREF1058_RS17170 are separated by 187 nucleotidesHMPREF1058_RS17170 and HMPREF1058_RS17165 are separated by 157 nucleotides HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866 _RS17180 HMPREF1058_RS17175: HMPREF1058_RS17175 - MarC family protein, at 509,025 to 509,627 _RS17175 HMPREF1058_RS17170: HMPREF1058_RS17170 - Crp/Fnr family transcriptional regulator, at 509,815 to 510,492 _RS17170 HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692 _RS17165 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2 3at 508.882 kb on - strandat 508.980 kb on - strandat 508.980 kb on - strandat 508.983 kb on + strandat 508.984 kb on - strandat 509.001 kb on + strandat 509.002 kb on - strandat 509.024 kb on - strandat 509.072 kb on + strandat 509.088 kb on + strand, within HMPREF1058_RS17175at 509.226 kb on + strand, within HMPREF1058_RS17175at 509.236 kb on + strand, within HMPREF1058_RS17175at 509.445 kb on - strand, within HMPREF1058_RS17175at 509.543 kb on + strand, within HMPREF1058_RS17175at 509.549 kb on + strand, within HMPREF1058_RS17175at 509.561 kb on + strand, within HMPREF1058_RS17175at 509.562 kb on - strand, within HMPREF1058_RS17175at 509.627 kb on + strandat 509.655 kb on - strandat 509.655 kb on - strandat 509.657 kb on - strandat 509.682 kb on + strandat 509.683 kb on - strandat 509.745 kb on + strandat 509.773 kb on - strandat 509.781 kb on - strandat 509.791 kb on - strandat 509.824 kb on - strandat 509.830 kb on + strandat 509.831 kb on - strandat 509.835 kb on + strandat 509.903 kb on + strand, within HMPREF1058_RS17170at 509.904 kb on - strand, within HMPREF1058_RS17170at 509.984 kb on + strand, within HMPREF1058_RS17170at 509.996 kb on + strand, within HMPREF1058_RS17170at 510.028 kb on + strand, within HMPREF1058_RS17170at 510.035 kb on + strandat 510.065 kb on + strand, within HMPREF1058_RS17170at 510.100 kb on + strand, within HMPREF1058_RS17170at 510.102 kb on + strand, within HMPREF1058_RS17170at 510.102 kb on + strand, within HMPREF1058_RS17170at 510.124 kb on - strand, within HMPREF1058_RS17170at 510.124 kb on - strand, within HMPREF1058_RS17170at 510.124 kb on - strand, within HMPREF1058_RS17170at 510.137 kb on + strand, within HMPREF1058_RS17170at 510.138 kb on - strand, within HMPREF1058_RS17170at 510.138 kb on - strand, within HMPREF1058_RS17170at 510.155 kb on + strand, within HMPREF1058_RS17170at 510.155 kb on + strand, within HMPREF1058_RS17170at 510.156 kb on - strand, within HMPREF1058_RS17170at 510.156 kb on - strand, within HMPREF1058_RS17170at 510.198 kb on + strand, within HMPREF1058_RS17170at 510.207 kb on - strand, within HMPREF1058_RS17170at 510.219 kb on + strand, within HMPREF1058_RS17170at 510.222 kb on + strand, within HMPREF1058_RS17170at 510.222 kb on + strand, within HMPREF1058_RS17170at 510.263 kb on + strand, within HMPREF1058_RS17170at 510.263 kb on + strand, within HMPREF1058_RS17170at 510.264 kb on - strandat 510.428 kb on + strandat 510.499 kb on - strandat 510.523 kb on + strandat 510.524 kb on - strandat 510.563 kb on - strandat 510.567 kb on - strandat 510.570 kb on - strandat 510.572 kb on - strandat 510.587 kb on + strandat 510.644 kb on - strandat 510.718 kb on + strandat 510.719 kb on - strandat 510.719 kb on - strandat 510.726 kb on + strandat 510.734 kb on + strandat 510.867 kb on + strand, within HMPREF1058_RS17165at 511.008 kb on + strand, within HMPREF1058_RS17165at 511.010 kb on + strand, within HMPREF1058_RS17165at 511.070 kb on + strand, within HMPREF1058_RS17165at 511.071 kb on - strand, within HMPREF1058_RS17165at 511.146 kb on + strand, within HMPREF1058_RS17165at 511.152 kb on + strand, within HMPREF1058_RS17165at 511.152 kb on + strand, within HMPREF1058_RS17165at 511.152 kb on + strand, within HMPREF1058_RS17165at 511.340 kb on + strand, within HMPREF1058_RS17165at 511.373 kb on + strand, within HMPREF1058_RS17165at 511.373 kb on + strand, within HMPREF1058_RS17165at 511.382 kb on + strand, within HMPREF1058_RS17165at 511.385 kb on - strand, within HMPREF1058_RS17165at 511.385 kb on - strand, within HMPREF1058_RS17165at 511.388 kb on - strand, within HMPREF1058_RS17165at 511.470 kb on + strand, within HMPREF1058_RS17165at 511.473 kb on + strand, within HMPREF1058_RS17165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
remove
508,882 - -1.3
508,980 - -0.8
508,980 - +0.3
508,983 + +1.1
508,984 - -0.1
509,001 + +0.4
509,002 - +1.0
509,024 - +0.2
509,072 + +0.5
509,088 + HMPREF1058_RS17175 0.10 +0.8
509,226 + HMPREF1058_RS17175 0.33 -0.1
509,236 + HMPREF1058_RS17175 0.35 -0.3
509,445 - HMPREF1058_RS17175 0.70 -0.1
509,543 + HMPREF1058_RS17175 0.86 +0.2
509,549 + HMPREF1058_RS17175 0.87 -0.0
509,561 + HMPREF1058_RS17175 0.89 +0.7
509,562 - HMPREF1058_RS17175 0.89 -0.1
509,627 + -1.7
509,655 - +2.0
509,655 - +0.1
509,657 - +2.7
509,682 + +0.8
509,683 - +1.7
509,745 + +1.5
509,773 - +1.2
509,781 - +0.6
509,791 - +0.5
509,824 - +1.9
509,830 + -0.1
509,831 - +2.6
509,835 + +2.4
509,903 + HMPREF1058_RS17170 0.13 +0.5
509,904 - HMPREF1058_RS17170 0.13 +0.1
509,984 + HMPREF1058_RS17170 0.25 +0.6
509,996 + HMPREF1058_RS17170 0.27 +0.6
510,028 + HMPREF1058_RS17170 0.31 -1.1
510,035 + +2.4
510,065 + HMPREF1058_RS17170 0.37 +0.7
510,100 + HMPREF1058_RS17170 0.42 +1.9
510,102 + HMPREF1058_RS17170 0.42 +0.6
510,102 + HMPREF1058_RS17170 0.42 +0.6
510,124 - HMPREF1058_RS17170 0.46 +0.8
510,124 - HMPREF1058_RS17170 0.46 +1.6
510,124 - HMPREF1058_RS17170 0.46 +3.6
510,137 + HMPREF1058_RS17170 0.47 +1.3
510,138 - HMPREF1058_RS17170 0.48 +2.0
510,138 - HMPREF1058_RS17170 0.48 +1.0
510,155 + HMPREF1058_RS17170 0.50 +0.5
510,155 + HMPREF1058_RS17170 0.50 +0.6
510,156 - HMPREF1058_RS17170 0.50 +0.5
510,156 - HMPREF1058_RS17170 0.50 -1.4
510,198 + HMPREF1058_RS17170 0.56 +1.0
510,207 - HMPREF1058_RS17170 0.58 +1.5
510,219 + HMPREF1058_RS17170 0.60 +1.3
510,222 + HMPREF1058_RS17170 0.60 +1.2
510,222 + HMPREF1058_RS17170 0.60 +1.0
510,263 + HMPREF1058_RS17170 0.66 +0.9
510,263 + HMPREF1058_RS17170 0.66 +2.2
510,264 - +0.0
510,428 + +1.3
510,499 - -1.1
510,523 + +0.1
510,524 - -2.2
510,563 - -0.5
510,567 - +0.5
510,570 - +1.8
510,572 - -0.7
510,587 + -0.7
510,644 - -0.3
510,718 + -0.6
510,719 - +0.5
510,719 - +0.0
510,726 + +0.3
510,734 + +1.1
510,867 + HMPREF1058_RS17165 0.11 -0.7
511,008 + HMPREF1058_RS17165 0.18 +1.4
511,010 + HMPREF1058_RS17165 0.18 +0.2
511,070 + HMPREF1058_RS17165 0.21 -1.7
511,071 - HMPREF1058_RS17165 0.21 -1.5
511,146 + HMPREF1058_RS17165 0.24 -0.6
511,152 + HMPREF1058_RS17165 0.25 -1.4
511,152 + HMPREF1058_RS17165 0.25 -0.7
511,152 + HMPREF1058_RS17165 0.25 -0.9
511,340 + HMPREF1058_RS17165 0.34 -2.3
511,373 + HMPREF1058_RS17165 0.35 -1.1
511,373 + HMPREF1058_RS17165 0.35 -2.5
511,382 + HMPREF1058_RS17165 0.36 +0.7
511,385 - HMPREF1058_RS17165 0.36 -0.3
511,385 - HMPREF1058_RS17165 0.36 -2.0
511,388 - HMPREF1058_RS17165 0.36 +1.0
511,470 + HMPREF1058_RS17165 0.40 -0.1
511,473 + HMPREF1058_RS17165 0.40 +1.0

Or see this region's nucleotide sequence