Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17020 and HMPREF1058_RS17015 are separated by 56 nucleotides HMPREF1058_RS17015 and HMPREF1058_RS17010 are separated by 57 nucleotides
HMPREF1058_RS17020: HMPREF1058_RS17020 - DUF4922 domain-containing protein, at 535,907 to 538,378
_RS17020
HMPREF1058_RS17015: HMPREF1058_RS17015 - SpoIID/LytB domain-containing protein, at 538,435 to 539,751
_RS17015
HMPREF1058_RS17010: HMPREF1058_RS17010 - MFS transporter, at 539,809 to 541,083
_RS17010
Position (kb) 538
539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.462 kb on + strand, within HMPREF1058_RS17020 at 537.601 kb on + strand, within HMPREF1058_RS17020 at 537.642 kb on + strand, within HMPREF1058_RS17020 at 537.734 kb on + strand, within HMPREF1058_RS17020 at 537.780 kb on + strand, within HMPREF1058_RS17020 at 537.785 kb on + strand, within HMPREF1058_RS17020 at 537.786 kb on - strand, within HMPREF1058_RS17020 at 537.786 kb on - strand, within HMPREF1058_RS17020 at 537.874 kb on - strand, within HMPREF1058_RS17020 at 537.909 kb on + strand, within HMPREF1058_RS17020 at 537.910 kb on - strand, within HMPREF1058_RS17020 at 537.934 kb on - strand, within HMPREF1058_RS17020 at 538.131 kb on + strand at 538.132 kb on - strand at 538.133 kb on + strand at 538.139 kb on - strand at 538.178 kb on + strand at 538.324 kb on - strand at 538.404 kb on + strand at 538.564 kb on - strand at 538.637 kb on - strand, within HMPREF1058_RS17015 at 538.637 kb on - strand, within HMPREF1058_RS17015 at 538.657 kb on - strand, within HMPREF1058_RS17015 at 538.931 kb on - strand, within HMPREF1058_RS17015 at 538.959 kb on + strand, within HMPREF1058_RS17015 at 538.960 kb on - strand, within HMPREF1058_RS17015 at 538.965 kb on - strand, within HMPREF1058_RS17015 at 538.965 kb on - strand, within HMPREF1058_RS17015 at 539.045 kb on + strand, within HMPREF1058_RS17015 at 539.046 kb on - strand, within HMPREF1058_RS17015 at 539.074 kb on + strand, within HMPREF1058_RS17015 at 539.162 kb on - strand, within HMPREF1058_RS17015 at 539.167 kb on + strand, within HMPREF1058_RS17015 at 539.167 kb on + strand, within HMPREF1058_RS17015 at 539.691 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.692 kb on - strand at 539.749 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.852 kb on + strand at 539.853 kb on - strand at 539.853 kb on - strand at 539.875 kb on + strand at 539.876 kb on - strand at 539.911 kb on - strand at 540.075 kb on - strand, within HMPREF1058_RS17010 at 540.135 kb on - strand, within HMPREF1058_RS17010 at 540.135 kb on - strand, within HMPREF1058_RS17010 at 540.178 kb on + strand, within HMPREF1058_RS17010 at 540.219 kb on - strand, within HMPREF1058_RS17010 at 540.269 kb on + strand, within HMPREF1058_RS17010 at 540.270 kb on - strand, within HMPREF1058_RS17010 at 540.270 kb on - strand, within HMPREF1058_RS17010 at 540.273 kb on + strand, within HMPREF1058_RS17010 at 540.274 kb on - strand, within HMPREF1058_RS17010 at 540.309 kb on + strand, within HMPREF1058_RS17010 at 540.310 kb on - strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.314 kb on + strand, within HMPREF1058_RS17010 at 540.315 kb on - strand, within HMPREF1058_RS17010 at 540.345 kb on - strand, within HMPREF1058_RS17010 at 540.381 kb on + strand, within HMPREF1058_RS17010 at 540.519 kb on - strand, within HMPREF1058_RS17010 at 540.573 kb on - strand, within HMPREF1058_RS17010 at 540.681 kb on - strand, within HMPREF1058_RS17010 at 540.749 kb on + strand, within HMPREF1058_RS17010
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 537,462 + HMPREF1058_RS17020 0.63 -2.1 537,601 + HMPREF1058_RS17020 0.69 +0.3 537,642 + HMPREF1058_RS17020 0.70 -0.1 537,734 + HMPREF1058_RS17020 0.74 +1.4 537,780 + HMPREF1058_RS17020 0.76 -1.8 537,785 + HMPREF1058_RS17020 0.76 -0.6 537,786 - HMPREF1058_RS17020 0.76 -0.5 537,786 - HMPREF1058_RS17020 0.76 +0.8 537,874 - HMPREF1058_RS17020 0.80 -0.5 537,909 + HMPREF1058_RS17020 0.81 -1.3 537,910 - HMPREF1058_RS17020 0.81 -0.4 537,934 - HMPREF1058_RS17020 0.82 +0.4 538,131 + -0.7 538,132 - +2.0 538,133 + +0.4 538,139 - +1.6 538,178 + -0.6 538,324 - -0.6 538,404 + +0.2 538,564 - +1.5 538,637 - HMPREF1058_RS17015 0.15 +1.4 538,637 - HMPREF1058_RS17015 0.15 +1.9 538,657 - HMPREF1058_RS17015 0.17 -0.4 538,931 - HMPREF1058_RS17015 0.38 +1.0 538,959 + HMPREF1058_RS17015 0.40 +0.3 538,960 - HMPREF1058_RS17015 0.40 +1.8 538,965 - HMPREF1058_RS17015 0.40 +0.3 538,965 - HMPREF1058_RS17015 0.40 -0.7 539,045 + HMPREF1058_RS17015 0.46 -0.7 539,046 - HMPREF1058_RS17015 0.46 +0.1 539,074 + HMPREF1058_RS17015 0.49 +0.8 539,162 - HMPREF1058_RS17015 0.55 +0.2 539,167 + HMPREF1058_RS17015 0.56 +1.5 539,167 + HMPREF1058_RS17015 0.56 -0.4 539,691 + +0.0 539,691 + -0.6 539,691 + +0.2 539,692 - +0.5 539,692 - -0.9 539,692 - +0.0 539,692 - +0.5 539,692 - -0.2 539,692 - +0.6 539,749 + +0.6 539,823 + +0.2 539,823 + -0.2 539,823 + -2.0 539,852 + -0.2 539,853 - +1.6 539,853 - -0.4 539,875 + -0.6 539,876 - +0.6 539,911 - -0.7 540,075 - HMPREF1058_RS17010 0.21 -0.1 540,135 - HMPREF1058_RS17010 0.26 -1.4 540,135 - HMPREF1058_RS17010 0.26 -0.5 540,178 + HMPREF1058_RS17010 0.29 -1.1 540,219 - HMPREF1058_RS17010 0.32 -0.6 540,269 + HMPREF1058_RS17010 0.36 +0.8 540,270 - HMPREF1058_RS17010 0.36 +1.0 540,270 - HMPREF1058_RS17010 0.36 +1.3 540,273 + HMPREF1058_RS17010 0.36 +1.4 540,274 - HMPREF1058_RS17010 0.36 -0.5 540,309 + HMPREF1058_RS17010 0.39 -1.0 540,310 - HMPREF1058_RS17010 0.39 +0.0 540,314 + HMPREF1058_RS17010 0.40 +0.1 540,314 + HMPREF1058_RS17010 0.40 -0.1 540,314 + HMPREF1058_RS17010 0.40 -0.3 540,315 - HMPREF1058_RS17010 0.40 +0.1 540,345 - HMPREF1058_RS17010 0.42 +0.7 540,381 + HMPREF1058_RS17010 0.45 +1.0 540,519 - HMPREF1058_RS17010 0.56 -0.1 540,573 - HMPREF1058_RS17010 0.60 -0.8 540,681 - HMPREF1058_RS17010 0.68 +1.8 540,749 + HMPREF1058_RS17010 0.74 +0.4
Or see this region's nucleotide sequence