Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17005 and HMPREF1058_RS17000 are separated by 233 nucleotides HMPREF1058_RS17000 and HMPREF1058_RS16995 are separated by 25 nucleotides HMPREF1058_RS16995 and HMPREF1058_RS16990 are separated by 12 nucleotides HMPREF1058_RS16990 and HMPREF1058_RS16985 are separated by 116 nucleotides
HMPREF1058_RS17005: HMPREF1058_RS17005 - DUF4251 domain-containing protein, at 541,921 to 542,475
_RS17005
HMPREF1058_RS17000: HMPREF1058_RS17000 - DUF4251 domain-containing protein, at 542,709 to 543,266
_RS17000
HMPREF1058_RS16995: HMPREF1058_RS16995 - DUF4136 domain-containing protein, at 543,292 to 543,924
_RS16995
HMPREF1058_RS16990: HMPREF1058_RS16990 - porin family protein, at 543,937 to 544,575
_RS16990
HMPREF1058_RS16985: HMPREF1058_RS16985 - sensor histidine kinase, at 544,692 to 545,735
_RS16985
Position (kb) 543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 542.295 kb on - strand, within HMPREF1058_RS17005 at 542.313 kb on - strand, within HMPREF1058_RS17005 at 542.325 kb on + strand, within HMPREF1058_RS17005 at 542.326 kb on - strand, within HMPREF1058_RS17005 at 542.383 kb on - strand, within HMPREF1058_RS17005 at 542.385 kb on - strand, within HMPREF1058_RS17005 at 542.483 kb on - strand at 542.485 kb on - strand at 542.628 kb on + strand at 542.701 kb on + strand at 542.706 kb on - strand at 542.728 kb on + strand at 542.729 kb on - strand at 542.734 kb on + strand at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.083 kb on + strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.084 kb on - strand, within HMPREF1058_RS17000 at 543.096 kb on - strand, within HMPREF1058_RS17000 at 543.170 kb on - strand, within HMPREF1058_RS17000 at 543.264 kb on + strand at 543.264 kb on + strand at 543.270 kb on - strand at 543.383 kb on - strand, within HMPREF1058_RS16995 at 543.392 kb on - strand, within HMPREF1058_RS16995 at 543.440 kb on - strand at 543.558 kb on - strand, within HMPREF1058_RS16995 at 543.717 kb on + strand, within HMPREF1058_RS16995 at 543.718 kb on + strand, within HMPREF1058_RS16995 at 543.724 kb on + strand, within HMPREF1058_RS16995 at 543.725 kb on - strand, within HMPREF1058_RS16995 at 543.836 kb on - strand, within HMPREF1058_RS16995 at 543.870 kb on - strand at 543.975 kb on + strand at 543.975 kb on + strand at 543.995 kb on + strand at 544.017 kb on + strand, within HMPREF1058_RS16990 at 544.325 kb on - strand, within HMPREF1058_RS16990 at 544.352 kb on - strand, within HMPREF1058_RS16990 at 544.370 kb on - strand, within HMPREF1058_RS16990 at 544.383 kb on - strand, within HMPREF1058_RS16990 at 544.481 kb on + strand, within HMPREF1058_RS16990 at 544.483 kb on + strand, within HMPREF1058_RS16990 at 544.484 kb on - strand, within HMPREF1058_RS16990 at 544.486 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand at 544.489 kb on - strand, within HMPREF1058_RS16990 at 544.553 kb on + strand at 544.559 kb on + strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.778 kb on - strand at 544.779 kb on + strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.781 kb on + strand at 544.782 kb on - strand at 544.876 kb on + strand, within HMPREF1058_RS16985
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 542,295 - HMPREF1058_RS17005 0.67 +0.7 542,313 - HMPREF1058_RS17005 0.71 -0.3 542,325 + HMPREF1058_RS17005 0.73 -0.0 542,326 - HMPREF1058_RS17005 0.73 -1.7 542,383 - HMPREF1058_RS17005 0.83 +1.6 542,385 - HMPREF1058_RS17005 0.84 -0.8 542,483 - -0.3 542,485 - -0.2 542,628 + -0.1 542,701 + +0.1 542,706 - +0.8 542,728 + -0.6 542,729 - -1.1 542,734 + +1.0 543,083 + HMPREF1058_RS17000 0.67 -1.2 543,083 + HMPREF1058_RS17000 0.67 +0.2 543,083 + HMPREF1058_RS17000 0.67 +0.8 543,084 - HMPREF1058_RS17000 0.67 +0.3 543,084 - HMPREF1058_RS17000 0.67 -1.4 543,096 - HMPREF1058_RS17000 0.69 +1.0 543,170 - HMPREF1058_RS17000 0.83 -0.3 543,264 + +1.0 543,264 + -2.4 543,270 - +0.1 543,383 - HMPREF1058_RS16995 0.14 +1.1 543,392 - HMPREF1058_RS16995 0.16 -0.3 543,440 - +0.4 543,558 - HMPREF1058_RS16995 0.42 +0.6 543,717 + HMPREF1058_RS16995 0.67 -0.2 543,718 + HMPREF1058_RS16995 0.67 +0.9 543,724 + HMPREF1058_RS16995 0.68 +0.1 543,725 - HMPREF1058_RS16995 0.68 +1.6 543,836 - HMPREF1058_RS16995 0.86 +0.6 543,870 - -0.5 543,975 + +0.2 543,975 + +0.3 543,995 + +1.8 544,017 + HMPREF1058_RS16990 0.13 -0.8 544,325 - HMPREF1058_RS16990 0.61 +0.1 544,352 - HMPREF1058_RS16990 0.65 -2.9 544,370 - HMPREF1058_RS16990 0.68 -0.6 544,383 - HMPREF1058_RS16990 0.70 +3.0 544,481 + HMPREF1058_RS16990 0.85 -0.3 544,483 + HMPREF1058_RS16990 0.85 -0.5 544,484 - HMPREF1058_RS16990 0.86 -1.6 544,486 + HMPREF1058_RS16990 0.86 -1.1 544,488 + HMPREF1058_RS16990 0.86 +1.8 544,488 + +2.0 544,489 - HMPREF1058_RS16990 0.86 +1.3 544,553 + +1.7 544,559 + -1.2 544,777 + +1.3 544,777 + +1.0 544,777 + +0.7 544,778 - +0.8 544,779 + -0.2 544,780 - -0.6 544,780 - +1.0 544,780 - -0.1 544,781 + -1.5 544,782 - +0.4 544,876 + HMPREF1058_RS16985 0.18 +0.5
Or see this region's nucleotide sequence