Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16785 and HMPREF1058_RS16780 overlap by 4 nucleotides HMPREF1058_RS16780 and HMPREF1058_RS16775 overlap by 35 nucleotides HMPREF1058_RS16775 and HMPREF1058_RS16770 are separated by 34 nucleotides HMPREF1058_RS16770 and HMPREF1058_RS16765 are separated by 157 nucleotides
HMPREF1058_RS16785: HMPREF1058_RS16785 - putative DNA modification/repair radical SAM protein, at 598,429 to 599,697
_RS16785
HMPREF1058_RS16780: HMPREF1058_RS16780 - TIGR03915 family putative DNA repair protein, at 599,694 to 600,461
_RS16780
HMPREF1058_RS16775: HMPREF1058_RS16775 - tRNA pseudouridine(38-40) synthase TruA, at 600,427 to 601,200
_RS16775
HMPREF1058_RS16770: HMPREF1058_RS16770 - hypothetical protein, at 601,235 to 601,909
_RS16770
HMPREF1058_RS16765: HMPREF1058_RS16765 - PhoH family protein, at 602,067 to 603,071
_RS16765
Position (kb) 600
601
602 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 599.515 kb on + strand, within HMPREF1058_RS16785 at 599.516 kb on - strand, within HMPREF1058_RS16785 at 599.537 kb on + strand, within HMPREF1058_RS16785 at 599.557 kb on + strand, within HMPREF1058_RS16785 at 599.558 kb on - strand, within HMPREF1058_RS16785 at 599.630 kb on + strand at 599.710 kb on - strand at 599.718 kb on - strand at 599.754 kb on + strand at 599.814 kb on + strand, within HMPREF1058_RS16780 at 599.833 kb on + strand, within HMPREF1058_RS16780 at 599.834 kb on - strand, within HMPREF1058_RS16780 at 599.834 kb on - strand, within HMPREF1058_RS16780 at 599.834 kb on - strand, within HMPREF1058_RS16780 at 600.070 kb on + strand, within HMPREF1058_RS16780 at 600.207 kb on + strand, within HMPREF1058_RS16780 at 600.208 kb on - strand, within HMPREF1058_RS16780 at 600.225 kb on + strand, within HMPREF1058_RS16780 at 600.234 kb on + strand, within HMPREF1058_RS16780 at 600.235 kb on - strand, within HMPREF1058_RS16780 at 600.238 kb on - strand, within HMPREF1058_RS16780 at 600.238 kb on - strand, within HMPREF1058_RS16780 at 600.239 kb on + strand, within HMPREF1058_RS16780 at 600.364 kb on - strand, within HMPREF1058_RS16780 at 600.419 kb on + strand at 600.420 kb on - strand at 600.442 kb on - strand at 600.487 kb on + strand at 600.528 kb on + strand, within HMPREF1058_RS16775 at 600.529 kb on - strand, within HMPREF1058_RS16775 at 600.624 kb on + strand, within HMPREF1058_RS16775 at 600.624 kb on + strand, within HMPREF1058_RS16775 at 600.625 kb on - strand, within HMPREF1058_RS16775 at 600.649 kb on - strand at 600.654 kb on + strand, within HMPREF1058_RS16775 at 600.654 kb on + strand, within HMPREF1058_RS16775 at 600.761 kb on + strand, within HMPREF1058_RS16775 at 600.809 kb on - strand, within HMPREF1058_RS16775 at 600.866 kb on + strand, within HMPREF1058_RS16775 at 600.869 kb on + strand, within HMPREF1058_RS16775 at 600.870 kb on - strand, within HMPREF1058_RS16775 at 600.874 kb on - strand, within HMPREF1058_RS16775 at 600.875 kb on + strand, within HMPREF1058_RS16775 at 600.944 kb on - strand, within HMPREF1058_RS16775 at 600.944 kb on - strand, within HMPREF1058_RS16775 at 601.069 kb on + strand, within HMPREF1058_RS16775 at 601.123 kb on + strand at 601.184 kb on + strand at 601.185 kb on - strand at 601.247 kb on + strand at 601.247 kb on + strand at 601.248 kb on - strand at 601.279 kb on + strand at 601.279 kb on + strand at 601.280 kb on - strand at 601.351 kb on + strand, within HMPREF1058_RS16770 at 601.363 kb on + strand, within HMPREF1058_RS16770 at 601.391 kb on - strand, within HMPREF1058_RS16770 at 601.571 kb on + strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.572 kb on - strand, within HMPREF1058_RS16770 at 601.768 kb on + strand, within HMPREF1058_RS16770 at 601.776 kb on + strand, within HMPREF1058_RS16770 at 601.777 kb on - strand, within HMPREF1058_RS16770 at 601.781 kb on - strand, within HMPREF1058_RS16770 at 601.785 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.794 kb on - strand, within HMPREF1058_RS16770 at 601.900 kb on + strand at 601.900 kb on + strand at 601.910 kb on - strand at 601.919 kb on - strand at 602.032 kb on + strand at 602.083 kb on + strand at 602.089 kb on + strand at 602.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 599,515 + HMPREF1058_RS16785 0.86 -0.4 599,516 - HMPREF1058_RS16785 0.86 +0.5 599,537 + HMPREF1058_RS16785 0.87 +0.4 599,557 + HMPREF1058_RS16785 0.89 -1.1 599,558 - HMPREF1058_RS16785 0.89 +1.0 599,630 + -0.3 599,710 - -0.2 599,718 - +0.2 599,754 + -0.8 599,814 + HMPREF1058_RS16780 0.16 -0.9 599,833 + HMPREF1058_RS16780 0.18 -0.4 599,834 - HMPREF1058_RS16780 0.18 +0.5 599,834 - HMPREF1058_RS16780 0.18 +1.8 599,834 - HMPREF1058_RS16780 0.18 +0.5 600,070 + HMPREF1058_RS16780 0.49 +2.1 600,207 + HMPREF1058_RS16780 0.67 -0.4 600,208 - HMPREF1058_RS16780 0.67 +0.1 600,225 + HMPREF1058_RS16780 0.69 +0.1 600,234 + HMPREF1058_RS16780 0.70 +0.8 600,235 - HMPREF1058_RS16780 0.70 -0.6 600,238 - HMPREF1058_RS16780 0.71 +0.3 600,238 - HMPREF1058_RS16780 0.71 -0.0 600,239 + HMPREF1058_RS16780 0.71 -0.1 600,364 - HMPREF1058_RS16780 0.87 +0.0 600,419 + +0.2 600,420 - -1.0 600,442 - -0.3 600,487 + +2.9 600,528 + HMPREF1058_RS16775 0.13 +3.8 600,529 - HMPREF1058_RS16775 0.13 +1.9 600,624 + HMPREF1058_RS16775 0.25 +2.3 600,624 + HMPREF1058_RS16775 0.25 +0.8 600,625 - HMPREF1058_RS16775 0.26 +2.8 600,649 - +0.5 600,654 + HMPREF1058_RS16775 0.29 +3.4 600,654 + HMPREF1058_RS16775 0.29 +2.0 600,761 + HMPREF1058_RS16775 0.43 +1.3 600,809 - HMPREF1058_RS16775 0.49 +1.2 600,866 + HMPREF1058_RS16775 0.57 +2.3 600,869 + HMPREF1058_RS16775 0.57 +2.9 600,870 - HMPREF1058_RS16775 0.57 +2.6 600,874 - HMPREF1058_RS16775 0.58 +2.8 600,875 + HMPREF1058_RS16775 0.58 +1.8 600,944 - HMPREF1058_RS16775 0.67 +2.6 600,944 - HMPREF1058_RS16775 0.67 +3.3 601,069 + HMPREF1058_RS16775 0.83 +2.2 601,123 + +2.1 601,184 + +2.9 601,185 - +1.2 601,247 + +2.3 601,247 + +1.7 601,248 - +0.2 601,279 + +3.4 601,279 + +2.1 601,280 - +0.7 601,351 + HMPREF1058_RS16770 0.17 +3.0 601,363 + HMPREF1058_RS16770 0.19 +1.7 601,391 - HMPREF1058_RS16770 0.23 -0.2 601,571 + HMPREF1058_RS16770 0.50 +3.1 601,572 - HMPREF1058_RS16770 0.50 -0.2 601,572 - HMPREF1058_RS16770 0.50 +1.3 601,572 - HMPREF1058_RS16770 0.50 +0.3 601,768 + HMPREF1058_RS16770 0.79 +2.1 601,776 + HMPREF1058_RS16770 0.80 +1.2 601,777 - HMPREF1058_RS16770 0.80 +0.6 601,781 - HMPREF1058_RS16770 0.81 +0.2 601,785 - HMPREF1058_RS16770 0.81 +1.1 601,794 - HMPREF1058_RS16770 0.83 +2.0 601,794 - HMPREF1058_RS16770 0.83 +1.6 601,900 + +1.7 601,900 + +2.1 601,910 - +0.1 601,919 - +0.4 602,032 + +1.2 602,083 + +0.0 602,089 + -0.3 602,110 + +0.1
Or see this region's nucleotide sequence