Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand at 652.965 kb on + strand, within HMPREF1058_RS16515 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 651,853 - HMPREF1058_RS16530 0.89 +0.6 652,026 - HMPREF1058_RS16525 0.27 -0.3 652,056 - HMPREF1058_RS16525 0.36 +0.2 652,056 - HMPREF1058_RS16525 0.36 -0.2 652,120 - HMPREF1058_RS16525 0.56 -0.9 652,236 + +0.5 652,237 - +0.2 652,237 - -0.1 652,241 - -0.1 652,363 - HMPREF1058_RS16520 0.18 +0.4 652,405 - HMPREF1058_RS16520 0.26 +0.8 652,405 - +1.6 652,571 - HMPREF1058_RS16520 0.57 +1.6 652,579 - HMPREF1058_RS16520 0.58 -0.8 652,678 - HMPREF1058_RS16520 0.77 -0.5 652,724 - HMPREF1058_RS16520 0.85 +1.2 652,807 - -0.5 652,807 - -0.8 652,807 - +0.1 652,807 - -0.4 652,840 - -0.8 652,846 - +0.7 652,886 + -0.3 652,965 + HMPREF1058_RS16515 0.11 +0.7 653,031 - HMPREF1058_RS16515 0.18 +0.6 653,155 - HMPREF1058_RS16515 0.30 +0.6 653,281 + HMPREF1058_RS16515 0.42 +1.8 653,307 - HMPREF1058_RS16515 0.45 +0.8 653,511 - HMPREF1058_RS16515 0.65 +1.0 653,587 - HMPREF1058_RS16515 0.72 +0.1 653,587 - HMPREF1058_RS16515 0.72 +0.4 653,614 + HMPREF1058_RS16515 0.75 -0.9 653,634 + HMPREF1058_RS16515 0.77 +1.9 653,647 + HMPREF1058_RS16515 0.78 -0.3 653,688 + HMPREF1058_RS16515 0.82 +0.8 653,689 - HMPREF1058_RS16515 0.82 +0.7 653,696 - HMPREF1058_RS16515 0.83 +0.2 653,696 - HMPREF1058_RS16515 0.83 +0.5 653,775 + +0.9 653,776 - -0.2 653,776 - +0.9 653,776 - +4.9 653,919 - +0.3 653,997 + -2.1 654,011 - -2.6 654,108 - HMPREF1058_RS16510 0.19 -1.3 654,122 - HMPREF1058_RS16510 0.23 -1.1 654,173 + HMPREF1058_RS16510 0.35 -1.7 654,173 + HMPREF1058_RS16510 0.35 -0.9 654,204 + HMPREF1058_RS16510 0.43 -0.5 654,204 + HMPREF1058_RS16510 0.43 -1.6 654,478 + +0.3 654,478 + -0.0 654,479 - -1.4 654,499 - -1.9 654,540 + +0.7 654,541 - -0.8 654,640 - -1.8 654,794 + HMPREF1058_RS16505 0.16 -1.4 654,794 + HMPREF1058_RS16505 0.16 -0.5 654,794 + HMPREF1058_RS16505 0.16 -2.8 654,795 - HMPREF1058_RS16505 0.16 -0.8
Or see this region's nucleotide sequence