Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16410 and HMPREF1058_RS16405 are separated by 178 nucleotides HMPREF1058_RS16405 and HMPREF1058_RS16400 are separated by 92 nucleotides HMPREF1058_RS16400 and HMPREF1058_RS16395 are separated by 214 nucleotides
HMPREF1058_RS16410: HMPREF1058_RS16410 - L-serine ammonia-lyase, at 678,062 to 679,270
_RS16410
HMPREF1058_RS16405: HMPREF1058_RS16405 - PepSY-like domain-containing protein, at 679,449 to 679,889
_RS16405
HMPREF1058_RS16400: HMPREF1058_RS16400 - DUF4738 domain-containing protein, at 679,982 to 680,551
_RS16400
HMPREF1058_RS16395: HMPREF1058_RS16395 - TrkA family potassium uptake protein, at 680,766 to 681,452
_RS16395
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 678.495 kb on - strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.552 kb on + strand, within HMPREF1058_RS16410 at 678.644 kb on + strand, within HMPREF1058_RS16410 at 678.645 kb on - strand, within HMPREF1058_RS16410 at 678.650 kb on - strand, within HMPREF1058_RS16410 at 678.697 kb on - strand, within HMPREF1058_RS16410 at 678.798 kb on - strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.874 kb on + strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.875 kb on - strand, within HMPREF1058_RS16410 at 678.879 kb on + strand, within HMPREF1058_RS16410 at 678.880 kb on - strand, within HMPREF1058_RS16410 at 678.930 kb on + strand, within HMPREF1058_RS16410 at 679.002 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.079 kb on - strand, within HMPREF1058_RS16410 at 679.094 kb on + strand, within HMPREF1058_RS16410 at 679.215 kb on + strand at 679.216 kb on - strand at 679.217 kb on + strand at 679.217 kb on + strand at 679.220 kb on - strand at 679.309 kb on - strand at 679.309 kb on - strand at 679.337 kb on + strand at 679.338 kb on - strand at 679.356 kb on - strand at 679.395 kb on + strand at 679.407 kb on - strand at 679.421 kb on + strand at 679.422 kb on - strand at 679.492 kb on - strand at 679.535 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.556 kb on + strand, within HMPREF1058_RS16405 at 679.557 kb on - strand, within HMPREF1058_RS16405 at 679.567 kb on + strand, within HMPREF1058_RS16405 at 679.580 kb on + strand, within HMPREF1058_RS16405 at 679.582 kb on + strand, within HMPREF1058_RS16405 at 679.592 kb on + strand, within HMPREF1058_RS16405 at 679.638 kb on + strand, within HMPREF1058_RS16405 at 679.639 kb on - strand, within HMPREF1058_RS16405 at 679.740 kb on - strand, within HMPREF1058_RS16405 at 679.863 kb on - strand at 679.899 kb on + strand at 679.983 kb on + strand at 680.063 kb on - strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.085 kb on + strand, within HMPREF1058_RS16400 at 680.086 kb on - strand, within HMPREF1058_RS16400 at 680.123 kb on + strand, within HMPREF1058_RS16400 at 680.180 kb on - strand, within HMPREF1058_RS16400 at 680.204 kb on + strand, within HMPREF1058_RS16400 at 680.351 kb on + strand, within HMPREF1058_RS16400 at 680.362 kb on + strand, within HMPREF1058_RS16400 at 680.386 kb on + strand, within HMPREF1058_RS16400 at 680.399 kb on - strand, within HMPREF1058_RS16400 at 680.414 kb on - strand, within HMPREF1058_RS16400 at 680.510 kb on + strand at 680.511 kb on - strand at 680.511 kb on - strand at 680.539 kb on - strand at 680.540 kb on + strand at 680.579 kb on + strand at 680.679 kb on - strand at 680.679 kb on - strand at 680.690 kb on + strand at 680.700 kb on + strand at 680.767 kb on + strand at 680.888 kb on + strand, within HMPREF1058_RS16395 at 680.889 kb on - strand, within HMPREF1058_RS16395
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 678,495 - HMPREF1058_RS16410 0.36 -1.5 678,552 + HMPREF1058_RS16410 0.41 -1.5 678,552 + HMPREF1058_RS16410 0.41 -0.5 678,644 + HMPREF1058_RS16410 0.48 -0.9 678,645 - HMPREF1058_RS16410 0.48 +0.8 678,650 - HMPREF1058_RS16410 0.49 -1.0 678,697 - HMPREF1058_RS16410 0.53 +2.0 678,798 - HMPREF1058_RS16410 0.61 +0.0 678,874 + HMPREF1058_RS16410 0.67 +0.1 678,874 + HMPREF1058_RS16410 0.67 -0.8 678,875 - HMPREF1058_RS16410 0.67 -0.2 678,875 - HMPREF1058_RS16410 0.67 +0.3 678,879 + HMPREF1058_RS16410 0.68 +1.1 678,880 - HMPREF1058_RS16410 0.68 +0.5 678,930 + HMPREF1058_RS16410 0.72 -0.4 679,002 - HMPREF1058_RS16410 0.78 -0.7 679,079 - HMPREF1058_RS16410 0.84 +0.7 679,079 - HMPREF1058_RS16410 0.84 +2.6 679,094 + HMPREF1058_RS16410 0.85 +0.7 679,215 + -0.4 679,216 - +1.0 679,217 + -0.5 679,217 + -0.6 679,220 - -0.1 679,309 - -0.6 679,309 - +2.5 679,337 + -0.5 679,338 - +1.0 679,356 - -0.3 679,395 + -0.2 679,407 - -0.0 679,421 + +0.9 679,422 - +0.6 679,492 - +1.5 679,535 + HMPREF1058_RS16405 0.20 -0.4 679,556 + HMPREF1058_RS16405 0.24 +1.0 679,556 + HMPREF1058_RS16405 0.24 +1.5 679,557 - HMPREF1058_RS16405 0.24 -0.2 679,567 + HMPREF1058_RS16405 0.27 -1.9 679,580 + HMPREF1058_RS16405 0.30 +0.6 679,582 + HMPREF1058_RS16405 0.30 +1.1 679,592 + HMPREF1058_RS16405 0.32 +0.3 679,638 + HMPREF1058_RS16405 0.43 -1.1 679,639 - HMPREF1058_RS16405 0.43 -0.3 679,740 - HMPREF1058_RS16405 0.66 +0.7 679,863 - -0.5 679,899 + -0.4 679,983 + +0.4 680,063 - HMPREF1058_RS16400 0.14 -0.4 680,085 + HMPREF1058_RS16400 0.18 -1.5 680,085 + HMPREF1058_RS16400 0.18 -1.8 680,086 - HMPREF1058_RS16400 0.18 -0.3 680,123 + HMPREF1058_RS16400 0.25 -1.9 680,180 - HMPREF1058_RS16400 0.35 -1.2 680,204 + HMPREF1058_RS16400 0.39 -1.0 680,351 + HMPREF1058_RS16400 0.65 -1.1 680,362 + HMPREF1058_RS16400 0.67 -0.5 680,386 + HMPREF1058_RS16400 0.71 -1.1 680,399 - HMPREF1058_RS16400 0.73 +0.3 680,414 - HMPREF1058_RS16400 0.76 +0.6 680,510 + -1.5 680,511 - +0.6 680,511 - -0.5 680,539 - -1.5 680,540 + +3.0 680,579 + -0.6 680,679 - -0.4 680,679 - -1.4 680,690 + -0.8 680,700 + -0.5 680,767 + +0.9 680,888 + HMPREF1058_RS16395 0.18 -0.6 680,889 - HMPREF1058_RS16395 0.18 +1.1
Or see this region's nucleotide sequence