Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15940 and HMPREF1058_RS15935 are separated by 80 nucleotides HMPREF1058_RS15935 and HMPREF1058_RS15930 are separated by 76 nucleotides HMPREF1058_RS15930 and HMPREF1058_RS15925 are separated by 5 nucleotides
HMPREF1058_RS15940: HMPREF1058_RS15940 - carboxylating nicotinate-nucleotide diphosphorylase, at 804,585 to 805,436
_RS15940
HMPREF1058_RS15935: HMPREF1058_RS15935 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 805,517 to 805,990
_RS15935
HMPREF1058_RS15930: HMPREF1058_RS15930 - endonuclease, at 806,067 to 807,077
_RS15930
HMPREF1058_RS15925: HMPREF1058_RS15925 - aminoacyl-histidine dipeptidase, at 807,083 to 808,540
_RS15925
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2 at 805.500 kb on - strand at 805.531 kb on - strand at 805.536 kb on + strand at 805.562 kb on + strand at 805.595 kb on - strand, within HMPREF1058_RS15935 at 805.765 kb on - strand, within HMPREF1058_RS15935 at 805.804 kb on - strand, within HMPREF1058_RS15935 at 805.818 kb on + strand, within HMPREF1058_RS15935 at 805.859 kb on + strand, within HMPREF1058_RS15935 at 805.932 kb on + strand, within HMPREF1058_RS15935 at 805.957 kb on + strand at 805.958 kb on - strand at 805.977 kb on - strand at 805.994 kb on + strand at 805.995 kb on - strand at 806.027 kb on - strand at 806.100 kb on + strand at 806.113 kb on + strand at 806.125 kb on + strand at 806.141 kb on - strand at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.203 kb on - strand, within HMPREF1058_RS15930 at 806.234 kb on + strand, within HMPREF1058_RS15930 at 806.237 kb on + strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.238 kb on - strand, within HMPREF1058_RS15930 at 806.308 kb on + strand, within HMPREF1058_RS15930 at 806.341 kb on + strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.359 kb on - strand, within HMPREF1058_RS15930 at 806.394 kb on - strand, within HMPREF1058_RS15930 at 806.406 kb on - strand, within HMPREF1058_RS15930 at 806.645 kb on + strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.646 kb on - strand, within HMPREF1058_RS15930 at 806.648 kb on - strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.698 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.877 kb on + strand, within HMPREF1058_RS15930 at 806.993 kb on + strand at 806.995 kb on + strand at 807.085 kb on - strand at 807.096 kb on - strand at 807.097 kb on + strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.108 kb on - strand at 807.134 kb on - strand at 807.138 kb on - strand at 807.142 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.187 kb on + strand at 807.188 kb on - strand at 807.188 kb on - strand at 807.518 kb on + strand, within HMPREF1058_RS15925 at 807.519 kb on - strand, within HMPREF1058_RS15925 at 807.549 kb on + strand, within HMPREF1058_RS15925 at 807.605 kb on - strand, within HMPREF1058_RS15925 at 807.609 kb on - strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.696 kb on + strand, within HMPREF1058_RS15925 at 807.697 kb on - strand, within HMPREF1058_RS15925 at 807.736 kb on + strand, within HMPREF1058_RS15925 at 807.779 kb on - strand at 807.818 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.820 kb on - strand, within HMPREF1058_RS15925 at 807.823 kb on + strand, within HMPREF1058_RS15925 at 807.881 kb on - strand, within HMPREF1058_RS15925 at 807.886 kb on + strand, within HMPREF1058_RS15925 at 807.970 kb on - strand, within HMPREF1058_RS15925 at 807.988 kb on + strand, within HMPREF1058_RS15925
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 805,500 - -1.1 805,531 - -0.3 805,536 + -0.2 805,562 + -0.4 805,595 - HMPREF1058_RS15935 0.16 +2.6 805,765 - HMPREF1058_RS15935 0.52 +1.0 805,804 - HMPREF1058_RS15935 0.61 +0.6 805,818 + HMPREF1058_RS15935 0.64 +0.4 805,859 + HMPREF1058_RS15935 0.72 -0.1 805,932 + HMPREF1058_RS15935 0.88 -0.5 805,957 + -2.2 805,958 - +1.5 805,977 - -0.5 805,994 + -0.3 805,995 - -1.4 806,027 - +0.3 806,100 + +1.5 806,113 + -1.1 806,125 + -0.5 806,141 - +1.0 806,203 - HMPREF1058_RS15930 0.13 +1.8 806,203 - HMPREF1058_RS15930 0.13 +0.9 806,234 + HMPREF1058_RS15930 0.17 -0.4 806,237 + HMPREF1058_RS15930 0.17 +1.8 806,238 - HMPREF1058_RS15930 0.17 -1.5 806,238 - HMPREF1058_RS15930 0.17 +0.2 806,308 + HMPREF1058_RS15930 0.24 +1.6 806,341 + HMPREF1058_RS15930 0.27 +0.8 806,359 - HMPREF1058_RS15930 0.29 +1.5 806,359 - HMPREF1058_RS15930 0.29 -0.4 806,394 - HMPREF1058_RS15930 0.32 -0.9 806,406 - HMPREF1058_RS15930 0.34 +0.1 806,645 + HMPREF1058_RS15930 0.57 +0.2 806,646 - HMPREF1058_RS15930 0.57 +0.6 806,646 - HMPREF1058_RS15930 0.57 +0.1 806,648 - HMPREF1058_RS15930 0.57 -0.2 806,698 + HMPREF1058_RS15930 0.62 +2.4 806,698 + HMPREF1058_RS15930 0.62 -0.3 806,877 + HMPREF1058_RS15930 0.80 +0.2 806,877 + HMPREF1058_RS15930 0.80 -1.9 806,993 + +0.4 806,995 + +0.4 807,085 - -0.5 807,096 - +0.7 807,097 + +1.4 807,108 - +1.3 807,108 - -1.9 807,108 - +0.9 807,134 - -0.1 807,138 - +0.6 807,142 + +0.1 807,142 + +0.4 807,143 - +1.3 807,187 + +0.3 807,188 - +0.6 807,188 - -0.2 807,518 + HMPREF1058_RS15925 0.30 +0.9 807,519 - HMPREF1058_RS15925 0.30 +0.7 807,549 + HMPREF1058_RS15925 0.32 -0.1 807,605 - HMPREF1058_RS15925 0.36 +0.4 807,609 - HMPREF1058_RS15925 0.36 -0.3 807,696 + HMPREF1058_RS15925 0.42 -0.8 807,696 + HMPREF1058_RS15925 0.42 -0.2 807,696 + HMPREF1058_RS15925 0.42 -0.0 807,697 - HMPREF1058_RS15925 0.42 -1.0 807,736 + HMPREF1058_RS15925 0.45 -0.5 807,779 - -1.1 807,818 - HMPREF1058_RS15925 0.50 -0.9 807,820 - HMPREF1058_RS15925 0.51 -0.7 807,820 - HMPREF1058_RS15925 0.51 +2.1 807,823 + HMPREF1058_RS15925 0.51 +0.1 807,881 - HMPREF1058_RS15925 0.55 -1.3 807,886 + HMPREF1058_RS15925 0.55 -0.3 807,970 - HMPREF1058_RS15925 0.61 -0.6 807,988 + HMPREF1058_RS15925 0.62 -0.2
Or see this region's nucleotide sequence