Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15925 and HMPREF1058_RS15920 are separated by 221 nucleotides HMPREF1058_RS15920 and HMPREF1058_RS15915 are separated by 22 nucleotides HMPREF1058_RS15915 and HMPREF1058_RS15910 are separated by 118 nucleotides HMPREF1058_RS15910 and HMPREF1058_RS15905 are separated by 3 nucleotides HMPREF1058_RS15905 and HMPREF1058_RS15900 are separated by 102 nucleotides
HMPREF1058_RS15925: HMPREF1058_RS15925 - aminoacyl-histidine dipeptidase, at 807,083 to 808,540
_RS15925
HMPREF1058_RS15920: HMPREF1058_RS15920 - hypothetical protein, at 808,762 to 808,989
_RS15920
HMPREF1058_RS15915: HMPREF1058_RS15915 - OmpH family outer membrane protein, at 809,012 to 809,626
_RS15915
HMPREF1058_RS15910: HMPREF1058_RS15910 - thioredoxin, at 809,745 to 810,041
_RS15910
HMPREF1058_RS15905: HMPREF1058_RS15905 - thioredoxin, at 810,045 to 810,503
_RS15905
HMPREF1058_RS15900: HMPREF1058_RS15900 - NADH peroxidase, at 810,606 to 811,157
_RS15900
Position (kb) 809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.172 kb on + strand, within HMPREF1058_RS15925 at 808.213 kb on + strand, within HMPREF1058_RS15925 at 808.214 kb on - strand, within HMPREF1058_RS15925 at 808.216 kb on + strand, within HMPREF1058_RS15925 at 808.309 kb on + strand, within HMPREF1058_RS15925 at 808.313 kb on + strand, within HMPREF1058_RS15925 at 808.314 kb on - strand, within HMPREF1058_RS15925 at 808.315 kb on + strand, within HMPREF1058_RS15925 at 808.316 kb on - strand, within HMPREF1058_RS15925 at 808.372 kb on + strand, within HMPREF1058_RS15925 at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.483 kb on + strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.484 kb on - strand at 808.488 kb on - strand at 808.524 kb on - strand at 808.540 kb on + strand at 808.540 kb on + strand at 808.541 kb on - strand at 808.603 kb on - strand at 808.603 kb on - strand at 808.607 kb on - strand at 808.625 kb on + strand at 808.665 kb on - strand at 808.770 kb on + strand at 808.781 kb on + strand at 808.781 kb on + strand at 808.782 kb on - strand at 808.836 kb on - strand, within HMPREF1058_RS15920 at 808.872 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand, within HMPREF1058_RS15920 at 808.895 kb on + strand at 808.896 kb on - strand, within HMPREF1058_RS15920 at 808.983 kb on + strand at 808.984 kb on - strand at 808.987 kb on + strand at 809.052 kb on + strand at 809.158 kb on - strand, within HMPREF1058_RS15915 at 809.163 kb on - strand, within HMPREF1058_RS15915 at 809.188 kb on + strand, within HMPREF1058_RS15915 at 809.257 kb on - strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.521 kb on + strand, within HMPREF1058_RS15915 at 809.559 kb on - strand, within HMPREF1058_RS15915 at 809.602 kb on + strand at 809.603 kb on - strand at 809.628 kb on - strand at 809.644 kb on - strand at 809.644 kb on - strand at 809.645 kb on + strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.646 kb on - strand at 809.650 kb on - strand at 809.701 kb on + strand at 809.702 kb on - strand at 809.714 kb on - strand at 809.717 kb on - strand at 809.718 kb on + strand at 809.890 kb on + strand, within HMPREF1058_RS15910 at 809.896 kb on + strand, within HMPREF1058_RS15910 at 809.897 kb on - strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.922 kb on + strand, within HMPREF1058_RS15910 at 809.950 kb on + strand, within HMPREF1058_RS15910 at 809.951 kb on - strand, within HMPREF1058_RS15910 at 809.995 kb on + strand, within HMPREF1058_RS15910 at 810.013 kb on + strand at 810.033 kb on + strand at 810.034 kb on - strand at 810.065 kb on + strand at 810.066 kb on - strand at 810.066 kb on - strand at 810.066 kb on - strand at 810.074 kb on - strand at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.155 kb on + strand, within HMPREF1058_RS15905 at 810.180 kb on - strand, within HMPREF1058_RS15905 at 810.182 kb on + strand, within HMPREF1058_RS15905 at 810.182 kb on + strand, within HMPREF1058_RS15905 at 810.183 kb on - strand, within HMPREF1058_RS15905 at 810.184 kb on + strand, within HMPREF1058_RS15905 at 810.193 kb on - strand, within HMPREF1058_RS15905 at 810.242 kb on + strand, within HMPREF1058_RS15905 at 810.253 kb on - strand, within HMPREF1058_RS15905 at 810.279 kb on - strand, within HMPREF1058_RS15905 at 810.343 kb on + strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.347 kb on + strand, within HMPREF1058_RS15905 at 810.367 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.563 kb on + strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.587 kb on - strand at 810.588 kb on + strand at 810.589 kb on - strand at 810.589 kb on - strand at 810.593 kb on + strand at 810.602 kb on + strand at 810.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 808,172 + HMPREF1058_RS15925 0.75 +0.2 808,172 + HMPREF1058_RS15925 0.75 -3.5 808,213 + HMPREF1058_RS15925 0.78 -1.1 808,214 - HMPREF1058_RS15925 0.78 -0.3 808,216 + HMPREF1058_RS15925 0.78 +2.1 808,309 + HMPREF1058_RS15925 0.84 +0.2 808,313 + HMPREF1058_RS15925 0.84 +0.6 808,314 - HMPREF1058_RS15925 0.84 -0.2 808,315 + HMPREF1058_RS15925 0.84 -1.0 808,316 - HMPREF1058_RS15925 0.85 +0.1 808,372 + HMPREF1058_RS15925 0.88 +0.9 808,483 + -0.3 808,483 + +0.0 808,483 + -0.8 808,483 + +0.7 808,483 + -2.1 808,483 + -0.4 808,483 + -0.0 808,484 - -0.6 808,484 - +1.5 808,484 - +0.4 808,488 - +1.5 808,524 - -3.0 808,540 + -1.6 808,540 + -1.6 808,541 - +0.6 808,603 - +0.8 808,603 - -0.2 808,607 - +1.5 808,625 + -1.8 808,665 - -0.6 808,770 + -0.6 808,781 + -1.1 808,781 + -0.4 808,782 - -0.4 808,836 - HMPREF1058_RS15920 0.32 -0.1 808,872 + HMPREF1058_RS15920 0.48 -1.5 808,895 + HMPREF1058_RS15920 0.58 +1.2 808,895 + -1.5 808,896 - HMPREF1058_RS15920 0.59 +0.5 808,983 + -0.6 808,984 - -0.4 808,987 + -0.5 809,052 + +2.1 809,158 - HMPREF1058_RS15915 0.24 -0.3 809,163 - HMPREF1058_RS15915 0.25 -0.1 809,188 + HMPREF1058_RS15915 0.29 +2.3 809,257 - HMPREF1058_RS15915 0.40 -1.3 809,521 + HMPREF1058_RS15915 0.83 +1.8 809,521 + HMPREF1058_RS15915 0.83 +1.2 809,521 + HMPREF1058_RS15915 0.83 +1.3 809,559 - HMPREF1058_RS15915 0.89 +0.7 809,602 + +0.3 809,603 - +1.4 809,628 - +0.9 809,644 - +0.5 809,644 - +1.5 809,645 + +1.3 809,646 - +0.2 809,646 - -0.8 809,646 - +0.6 809,650 - +0.1 809,701 + -0.6 809,702 - +0.2 809,714 - +0.2 809,717 - +0.3 809,718 + +0.1 809,890 + HMPREF1058_RS15910 0.49 +0.1 809,896 + HMPREF1058_RS15910 0.51 +1.4 809,897 - HMPREF1058_RS15910 0.51 -0.5 809,922 + HMPREF1058_RS15910 0.60 +0.3 809,922 + HMPREF1058_RS15910 0.60 +0.5 809,950 + HMPREF1058_RS15910 0.69 +1.1 809,951 - HMPREF1058_RS15910 0.69 +0.7 809,995 + HMPREF1058_RS15910 0.84 +0.6 810,013 + +0.6 810,033 + +0.5 810,034 - -0.7 810,065 + +1.9 810,066 - -0.6 810,066 - -0.3 810,066 - -0.5 810,074 - +0.8 810,155 + HMPREF1058_RS15905 0.24 +1.4 810,155 + HMPREF1058_RS15905 0.24 +0.4 810,155 + HMPREF1058_RS15905 0.24 -0.1 810,155 + HMPREF1058_RS15905 0.24 +0.2 810,155 + HMPREF1058_RS15905 0.24 -0.4 810,155 + HMPREF1058_RS15905 0.24 +0.9 810,155 + HMPREF1058_RS15905 0.24 -0.9 810,180 - HMPREF1058_RS15905 0.29 -2.1 810,182 + HMPREF1058_RS15905 0.30 -0.2 810,182 + HMPREF1058_RS15905 0.30 -0.8 810,183 - HMPREF1058_RS15905 0.30 +0.9 810,184 + HMPREF1058_RS15905 0.30 -0.0 810,193 - HMPREF1058_RS15905 0.32 +0.0 810,242 + HMPREF1058_RS15905 0.43 -0.1 810,253 - HMPREF1058_RS15905 0.45 +0.3 810,279 - HMPREF1058_RS15905 0.51 -0.6 810,343 + HMPREF1058_RS15905 0.65 +0.4 810,344 - HMPREF1058_RS15905 0.65 -0.8 810,344 - HMPREF1058_RS15905 0.65 +0.1 810,347 + HMPREF1058_RS15905 0.66 -1.2 810,367 + HMPREF1058_RS15905 0.70 -0.1 810,442 + HMPREF1058_RS15905 0.86 -0.1 810,442 + HMPREF1058_RS15905 0.86 -1.2 810,563 + -0.9 810,564 - -0.8 810,564 - -0.2 810,564 - -0.9 810,564 - -0.5 810,587 - +0.5 810,588 + -0.8 810,589 - -0.2 810,589 - +0.5 810,593 + +0.1 810,602 + -0.8 810,603 - -0.8
Or see this region's nucleotide sequence