Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15800 and HMPREF1058_RS15795 are separated by 85 nucleotides HMPREF1058_RS15795 and HMPREF1058_RS15790 are separated by 153 nucleotides
HMPREF1058_RS15800: HMPREF1058_RS15800 - sigma-54-dependent Fis family transcriptional regulator, at 832,122 to 833,477
_RS15800
HMPREF1058_RS15795: HMPREF1058_RS15795 - TolC family protein, at 833,563 to 835,047
_RS15795
HMPREF1058_RS15790: HMPREF1058_RS15790 - FtsX-like permease family protein, at 835,201 to 836,445
_RS15790
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 832.565 kb on + strand, within HMPREF1058_RS15800 at 832.617 kb on + strand, within HMPREF1058_RS15800 at 832.832 kb on + strand, within HMPREF1058_RS15800 at 832.871 kb on + strand, within HMPREF1058_RS15800 at 832.872 kb on - strand, within HMPREF1058_RS15800 at 832.872 kb on - strand, within HMPREF1058_RS15800 at 832.949 kb on + strand, within HMPREF1058_RS15800 at 833.133 kb on + strand, within HMPREF1058_RS15800 at 833.220 kb on - strand, within HMPREF1058_RS15800 at 833.241 kb on + strand, within HMPREF1058_RS15800 at 833.242 kb on - strand, within HMPREF1058_RS15800 at 833.244 kb on - strand, within HMPREF1058_RS15800 at 833.408 kb on - strand at 833.465 kb on + strand at 833.470 kb on - strand at 833.477 kb on + strand at 833.477 kb on + strand at 833.477 kb on + strand at 833.507 kb on - strand at 833.533 kb on - strand at 833.598 kb on + strand at 833.598 kb on + strand at 833.603 kb on - strand at 833.605 kb on - strand at 833.605 kb on - strand at 833.649 kb on - strand at 833.651 kb on + strand at 833.652 kb on - strand at 833.679 kb on + strand at 833.680 kb on - strand at 833.680 kb on - strand at 833.890 kb on + strand, within HMPREF1058_RS15795 at 833.916 kb on + strand, within HMPREF1058_RS15795 at 833.964 kb on + strand, within HMPREF1058_RS15795 at 833.973 kb on + strand, within HMPREF1058_RS15795 at 833.974 kb on - strand, within HMPREF1058_RS15795 at 834.021 kb on + strand, within HMPREF1058_RS15795 at 834.138 kb on + strand, within HMPREF1058_RS15795 at 834.139 kb on - strand, within HMPREF1058_RS15795 at 834.279 kb on + strand, within HMPREF1058_RS15795 at 834.312 kb on + strand, within HMPREF1058_RS15795 at 834.409 kb on - strand, within HMPREF1058_RS15795 at 834.476 kb on + strand, within HMPREF1058_RS15795 at 834.486 kb on + strand, within HMPREF1058_RS15795 at 834.496 kb on + strand, within HMPREF1058_RS15795 at 834.540 kb on - strand, within HMPREF1058_RS15795 at 834.627 kb on + strand, within HMPREF1058_RS15795 at 834.627 kb on + strand, within HMPREF1058_RS15795 at 834.627 kb on + strand, within HMPREF1058_RS15795 at 834.627 kb on + strand, within HMPREF1058_RS15795 at 834.628 kb on - strand, within HMPREF1058_RS15795 at 834.628 kb on - strand, within HMPREF1058_RS15795 at 834.628 kb on - strand, within HMPREF1058_RS15795 at 834.628 kb on - strand, within HMPREF1058_RS15795 at 834.628 kb on - strand, within HMPREF1058_RS15795 at 834.679 kb on - strand, within HMPREF1058_RS15795 at 834.749 kb on + strand, within HMPREF1058_RS15795 at 834.750 kb on - strand, within HMPREF1058_RS15795 at 834.750 kb on - strand, within HMPREF1058_RS15795 at 834.753 kb on + strand, within HMPREF1058_RS15795 at 834.761 kb on - strand, within HMPREF1058_RS15795 at 834.769 kb on - strand, within HMPREF1058_RS15795 at 834.800 kb on + strand, within HMPREF1058_RS15795 at 834.800 kb on + strand, within HMPREF1058_RS15795 at 834.807 kb on + strand, within HMPREF1058_RS15795 at 834.810 kb on + strand, within HMPREF1058_RS15795 at 834.810 kb on + strand, within HMPREF1058_RS15795 at 834.939 kb on + strand at 834.942 kb on + strand at 835.163 kb on + strand at 835.166 kb on - strand at 835.166 kb on - strand at 835.166 kb on - strand at 835.166 kb on - strand at 835.348 kb on - strand, within HMPREF1058_RS15790 at 835.356 kb on + strand, within HMPREF1058_RS15790 at 835.357 kb on - strand, within HMPREF1058_RS15790 at 835.435 kb on + strand, within HMPREF1058_RS15790 at 835.436 kb on - strand, within HMPREF1058_RS15790 at 835.440 kb on - strand, within HMPREF1058_RS15790 at 835.440 kb on - strand, within HMPREF1058_RS15790 at 835.472 kb on - strand, within HMPREF1058_RS15790 at 835.490 kb on - strand, within HMPREF1058_RS15790 at 835.548 kb on + strand, within HMPREF1058_RS15790 at 835.613 kb on - strand, within HMPREF1058_RS15790 at 835.657 kb on + strand, within HMPREF1058_RS15790 at 835.661 kb on + strand, within HMPREF1058_RS15790 at 835.662 kb on - strand, within HMPREF1058_RS15790 at 835.662 kb on - strand, within HMPREF1058_RS15790 at 835.678 kb on + strand, within HMPREF1058_RS15790 at 835.679 kb on - strand, within HMPREF1058_RS15790 at 835.679 kb on - strand, within HMPREF1058_RS15790 at 835.692 kb on + strand, within HMPREF1058_RS15790 at 835.702 kb on - strand, within HMPREF1058_RS15790 at 835.731 kb on + strand, within HMPREF1058_RS15790 at 835.764 kb on - strand, within HMPREF1058_RS15790 at 835.787 kb on + strand, within HMPREF1058_RS15790 at 835.846 kb on + strand, within HMPREF1058_RS15790 at 835.852 kb on - strand, within HMPREF1058_RS15790 at 835.887 kb on - strand, within HMPREF1058_RS15790 at 835.974 kb on - strand, within HMPREF1058_RS15790
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 832,565 + HMPREF1058_RS15800 0.33 -0.5 832,617 + HMPREF1058_RS15800 0.37 +0.5 832,832 + HMPREF1058_RS15800 0.52 +0.6 832,871 + HMPREF1058_RS15800 0.55 -0.1 832,872 - HMPREF1058_RS15800 0.55 +0.3 832,872 - HMPREF1058_RS15800 0.55 -0.0 832,949 + HMPREF1058_RS15800 0.61 -0.1 833,133 + HMPREF1058_RS15800 0.75 -1.8 833,220 - HMPREF1058_RS15800 0.81 +0.6 833,241 + HMPREF1058_RS15800 0.83 -0.4 833,242 - HMPREF1058_RS15800 0.83 -0.2 833,244 - HMPREF1058_RS15800 0.83 -0.2 833,408 - +0.4 833,465 + +0.7 833,470 - -0.2 833,477 + +1.7 833,477 + -0.9 833,477 + -0.7 833,507 - +1.6 833,533 - +1.5 833,598 + +0.9 833,598 + +1.9 833,603 - +1.2 833,605 - +0.1 833,605 - -0.3 833,649 - +1.8 833,651 + -0.1 833,652 - +2.3 833,679 + +0.3 833,680 - +1.5 833,680 - -0.9 833,890 + HMPREF1058_RS15795 0.22 -0.2 833,916 + HMPREF1058_RS15795 0.24 +1.0 833,964 + HMPREF1058_RS15795 0.27 +0.9 833,973 + HMPREF1058_RS15795 0.28 +0.9 833,974 - HMPREF1058_RS15795 0.28 +1.8 834,021 + HMPREF1058_RS15795 0.31 +0.1 834,138 + HMPREF1058_RS15795 0.39 +0.4 834,139 - HMPREF1058_RS15795 0.39 +1.8 834,279 + HMPREF1058_RS15795 0.48 -0.5 834,312 + HMPREF1058_RS15795 0.50 +0.2 834,409 - HMPREF1058_RS15795 0.57 +1.2 834,476 + HMPREF1058_RS15795 0.61 +2.2 834,486 + HMPREF1058_RS15795 0.62 +1.5 834,496 + HMPREF1058_RS15795 0.63 +1.4 834,540 - HMPREF1058_RS15795 0.66 +1.7 834,627 + HMPREF1058_RS15795 0.72 +2.5 834,627 + HMPREF1058_RS15795 0.72 +0.3 834,627 + HMPREF1058_RS15795 0.72 +1.6 834,627 + HMPREF1058_RS15795 0.72 +0.0 834,628 - HMPREF1058_RS15795 0.72 +0.4 834,628 - HMPREF1058_RS15795 0.72 +1.4 834,628 - HMPREF1058_RS15795 0.72 +1.7 834,628 - HMPREF1058_RS15795 0.72 +2.3 834,628 - HMPREF1058_RS15795 0.72 +1.4 834,679 - HMPREF1058_RS15795 0.75 +0.0 834,749 + HMPREF1058_RS15795 0.80 +1.7 834,750 - HMPREF1058_RS15795 0.80 -0.6 834,750 - HMPREF1058_RS15795 0.80 +1.7 834,753 + HMPREF1058_RS15795 0.80 -0.6 834,761 - HMPREF1058_RS15795 0.81 +1.8 834,769 - HMPREF1058_RS15795 0.81 +1.3 834,800 + HMPREF1058_RS15795 0.83 +0.6 834,800 + HMPREF1058_RS15795 0.83 +1.0 834,807 + HMPREF1058_RS15795 0.84 +1.4 834,810 + HMPREF1058_RS15795 0.84 +0.7 834,810 + HMPREF1058_RS15795 0.84 +1.2 834,939 + -0.2 834,942 + +0.1 835,163 + +0.8 835,166 - -0.8 835,166 - -0.6 835,166 - -0.7 835,166 - +1.1 835,348 - HMPREF1058_RS15790 0.12 -0.1 835,356 + HMPREF1058_RS15790 0.12 -0.1 835,357 - HMPREF1058_RS15790 0.13 -1.0 835,435 + HMPREF1058_RS15790 0.19 +1.7 835,436 - HMPREF1058_RS15790 0.19 -0.4 835,440 - HMPREF1058_RS15790 0.19 -0.4 835,440 - HMPREF1058_RS15790 0.19 +0.1 835,472 - HMPREF1058_RS15790 0.22 -0.0 835,490 - HMPREF1058_RS15790 0.23 -0.1 835,548 + HMPREF1058_RS15790 0.28 +0.4 835,613 - HMPREF1058_RS15790 0.33 +0.3 835,657 + HMPREF1058_RS15790 0.37 -0.5 835,661 + HMPREF1058_RS15790 0.37 -0.3 835,662 - HMPREF1058_RS15790 0.37 +0.1 835,662 - HMPREF1058_RS15790 0.37 +0.1 835,678 + HMPREF1058_RS15790 0.38 -1.3 835,679 - HMPREF1058_RS15790 0.38 +3.0 835,679 - HMPREF1058_RS15790 0.38 -0.4 835,692 + HMPREF1058_RS15790 0.39 +0.0 835,702 - HMPREF1058_RS15790 0.40 -0.9 835,731 + HMPREF1058_RS15790 0.43 +0.2 835,764 - HMPREF1058_RS15790 0.45 +0.0 835,787 + HMPREF1058_RS15790 0.47 +0.0 835,846 + HMPREF1058_RS15790 0.52 -0.3 835,852 - HMPREF1058_RS15790 0.52 +0.6 835,887 - HMPREF1058_RS15790 0.55 +0.4 835,974 - HMPREF1058_RS15790 0.62 -0.1
Or see this region's nucleotide sequence