Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15760 and HMPREF1058_RS15755 are separated by 368 nucleotides HMPREF1058_RS15755 and HMPREF1058_RS15750 are separated by 161 nucleotides
HMPREF1058_RS15760: HMPREF1058_RS15760 - ABC transporter ATP-binding protein, at 842,950 to 843,615
_RS15760
HMPREF1058_RS15755: HMPREF1058_RS15755 - HlyD family efflux transporter periplasmic adaptor subunit, at 843,984 to 845,231
_RS15755
HMPREF1058_RS15750: HMPREF1058_RS15750 - glucosaminidase domain-containing protein, at 845,393 to 846,289
_RS15750
Position (kb) 843
844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 843.166 kb on + strand, within HMPREF1058_RS15760 at 843.213 kb on + strand, within HMPREF1058_RS15760 at 843.285 kb on + strand, within HMPREF1058_RS15760 at 843.286 kb on - strand, within HMPREF1058_RS15760 at 843.330 kb on + strand, within HMPREF1058_RS15760 at 843.480 kb on + strand, within HMPREF1058_RS15760 at 843.481 kb on - strand, within HMPREF1058_RS15760 at 843.481 kb on - strand, within HMPREF1058_RS15760 at 843.652 kb on + strand at 843.652 kb on + strand at 843.653 kb on - strand at 843.729 kb on + strand at 843.730 kb on - strand at 843.772 kb on + strand at 843.823 kb on + strand at 843.854 kb on + strand at 843.854 kb on + strand at 843.870 kb on + strand at 843.939 kb on - strand at 843.939 kb on - strand at 843.942 kb on + strand at 843.974 kb on + strand at 844.016 kb on - strand at 844.089 kb on - strand at 844.172 kb on - strand, within HMPREF1058_RS15755 at 844.226 kb on - strand, within HMPREF1058_RS15755 at 844.226 kb on - strand, within HMPREF1058_RS15755 at 844.227 kb on + strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand, within HMPREF1058_RS15755 at 844.228 kb on - strand at 844.265 kb on + strand, within HMPREF1058_RS15755 at 844.282 kb on - strand, within HMPREF1058_RS15755 at 844.308 kb on - strand, within HMPREF1058_RS15755 at 844.329 kb on + strand, within HMPREF1058_RS15755 at 844.400 kb on - strand, within HMPREF1058_RS15755 at 844.400 kb on - strand, within HMPREF1058_RS15755 at 844.411 kb on - strand, within HMPREF1058_RS15755 at 844.452 kb on - strand, within HMPREF1058_RS15755 at 844.493 kb on + strand, within HMPREF1058_RS15755 at 844.497 kb on + strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.498 kb on - strand, within HMPREF1058_RS15755 at 844.501 kb on + strand, within HMPREF1058_RS15755 at 844.502 kb on - strand, within HMPREF1058_RS15755 at 844.505 kb on + strand, within HMPREF1058_RS15755 at 844.506 kb on - strand, within HMPREF1058_RS15755 at 844.683 kb on - strand, within HMPREF1058_RS15755 at 844.823 kb on - strand, within HMPREF1058_RS15755 at 844.829 kb on + strand, within HMPREF1058_RS15755 at 844.885 kb on - strand, within HMPREF1058_RS15755 at 844.894 kb on + strand, within HMPREF1058_RS15755 at 844.907 kb on + strand, within HMPREF1058_RS15755 at 844.938 kb on - strand, within HMPREF1058_RS15755 at 844.941 kb on + strand, within HMPREF1058_RS15755 at 844.942 kb on - strand, within HMPREF1058_RS15755 at 844.989 kb on - strand, within HMPREF1058_RS15755 at 844.994 kb on + strand, within HMPREF1058_RS15755 at 845.100 kb on - strand, within HMPREF1058_RS15755 at 845.130 kb on + strand at 845.131 kb on - strand at 845.136 kb on + strand at 845.138 kb on + strand at 845.138 kb on + strand at 845.138 kb on + strand at 845.138 kb on + strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.139 kb on - strand at 845.143 kb on - strand at 845.170 kb on + strand at 845.410 kb on + strand at 845.410 kb on + strand at 845.411 kb on - strand at 845.461 kb on - strand at 845.463 kb on - strand at 845.502 kb on + strand, within HMPREF1058_RS15750 at 845.506 kb on + strand, within HMPREF1058_RS15750 at 845.507 kb on - strand, within HMPREF1058_RS15750 at 845.534 kb on + strand, within HMPREF1058_RS15750 at 845.534 kb on + strand, within HMPREF1058_RS15750 at 845.598 kb on - strand, within HMPREF1058_RS15750 at 845.598 kb on - strand, within HMPREF1058_RS15750 at 845.609 kb on - strand, within HMPREF1058_RS15750 at 845.611 kb on - strand, within HMPREF1058_RS15750 at 845.671 kb on + strand, within HMPREF1058_RS15750 at 845.672 kb on - strand, within HMPREF1058_RS15750 at 845.678 kb on - strand, within HMPREF1058_RS15750 at 845.690 kb on + strand, within HMPREF1058_RS15750 at 845.699 kb on - strand, within HMPREF1058_RS15750 at 845.701 kb on - strand, within HMPREF1058_RS15750 at 845.701 kb on - strand, within HMPREF1058_RS15750 at 845.762 kb on - strand, within HMPREF1058_RS15750 at 845.778 kb on + strand, within HMPREF1058_RS15750 at 845.779 kb on - strand, within HMPREF1058_RS15750 at 845.779 kb on - strand, within HMPREF1058_RS15750 at 845.779 kb on - strand, within HMPREF1058_RS15750 at 845.783 kb on - strand, within HMPREF1058_RS15750 at 845.787 kb on - strand, within HMPREF1058_RS15750 at 845.795 kb on + strand, within HMPREF1058_RS15750 at 845.795 kb on + strand, within HMPREF1058_RS15750 at 845.821 kb on - strand, within HMPREF1058_RS15750 at 845.845 kb on - strand, within HMPREF1058_RS15750 at 845.878 kb on + strand, within HMPREF1058_RS15750 at 845.930 kb on + strand, within HMPREF1058_RS15750 at 845.953 kb on - strand, within HMPREF1058_RS15750 at 845.971 kb on + strand, within HMPREF1058_RS15750 at 846.082 kb on + strand, within HMPREF1058_RS15750 at 846.082 kb on + strand, within HMPREF1058_RS15750 at 846.182 kb on - strand, within HMPREF1058_RS15750 at 846.182 kb on - strand, within HMPREF1058_RS15750 at 846.182 kb on - strand, within HMPREF1058_RS15750 at 846.182 kb on - strand at 846.182 kb on - strand, within HMPREF1058_RS15750 at 846.187 kb on + strand, within HMPREF1058_RS15750 at 846.187 kb on + strand, within HMPREF1058_RS15750 at 846.188 kb on - strand, within HMPREF1058_RS15750 at 846.188 kb on - strand, within HMPREF1058_RS15750 at 846.189 kb on + strand, within HMPREF1058_RS15750
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 843,166 + HMPREF1058_RS15760 0.32 -1.6 843,213 + HMPREF1058_RS15760 0.39 -0.2 843,285 + HMPREF1058_RS15760 0.50 +0.1 843,286 - HMPREF1058_RS15760 0.50 +0.3 843,330 + HMPREF1058_RS15760 0.57 -0.5 843,480 + HMPREF1058_RS15760 0.80 -0.3 843,481 - HMPREF1058_RS15760 0.80 -0.4 843,481 - HMPREF1058_RS15760 0.80 -1.1 843,652 + +0.3 843,652 + +0.4 843,653 - -1.6 843,729 + -1.6 843,730 - +0.3 843,772 + -0.1 843,823 + -0.2 843,854 + +0.3 843,854 + -0.5 843,870 + +0.2 843,939 - -0.1 843,939 - +0.7 843,942 + -1.0 843,974 + -0.2 844,016 - +1.3 844,089 - +2.3 844,172 - HMPREF1058_RS15755 0.15 +3.2 844,226 - HMPREF1058_RS15755 0.19 +2.5 844,226 - HMPREF1058_RS15755 0.19 +2.4 844,227 + HMPREF1058_RS15755 0.19 +2.7 844,228 - HMPREF1058_RS15755 0.20 +2.3 844,228 - HMPREF1058_RS15755 0.20 +3.7 844,228 - HMPREF1058_RS15755 0.20 +2.2 844,228 - -0.7 844,265 + HMPREF1058_RS15755 0.23 +1.9 844,282 - HMPREF1058_RS15755 0.24 +2.8 844,308 - HMPREF1058_RS15755 0.26 +1.5 844,329 + HMPREF1058_RS15755 0.28 +1.4 844,400 - HMPREF1058_RS15755 0.33 +2.5 844,400 - HMPREF1058_RS15755 0.33 +2.8 844,411 - HMPREF1058_RS15755 0.34 +0.9 844,452 - HMPREF1058_RS15755 0.38 +2.3 844,493 + HMPREF1058_RS15755 0.41 +1.2 844,497 + HMPREF1058_RS15755 0.41 +2.5 844,498 - HMPREF1058_RS15755 0.41 +2.6 844,498 - HMPREF1058_RS15755 0.41 +2.9 844,498 - HMPREF1058_RS15755 0.41 +3.7 844,501 + HMPREF1058_RS15755 0.41 +2.1 844,502 - HMPREF1058_RS15755 0.42 +2.0 844,505 + HMPREF1058_RS15755 0.42 +1.5 844,506 - HMPREF1058_RS15755 0.42 +2.7 844,683 - HMPREF1058_RS15755 0.56 +2.0 844,823 - HMPREF1058_RS15755 0.67 +3.1 844,829 + HMPREF1058_RS15755 0.68 +3.2 844,885 - HMPREF1058_RS15755 0.72 +2.7 844,894 + HMPREF1058_RS15755 0.73 +2.0 844,907 + HMPREF1058_RS15755 0.74 +1.7 844,938 - HMPREF1058_RS15755 0.76 +1.9 844,941 + HMPREF1058_RS15755 0.77 +2.0 844,942 - HMPREF1058_RS15755 0.77 +3.4 844,989 - HMPREF1058_RS15755 0.81 +3.7 844,994 + HMPREF1058_RS15755 0.81 +1.9 845,100 - HMPREF1058_RS15755 0.89 +2.9 845,130 + +2.2 845,131 - +2.4 845,136 + +2.7 845,138 + +2.4 845,138 + +2.9 845,138 + +3.3 845,138 + +3.2 845,139 - +3.2 845,139 - +2.9 845,139 - +2.4 845,139 - +2.7 845,139 - +1.2 845,143 - +2.9 845,170 + +3.2 845,410 + -0.4 845,410 + +0.5 845,411 - +0.8 845,461 - +0.2 845,463 - +0.5 845,502 + HMPREF1058_RS15750 0.12 -0.7 845,506 + HMPREF1058_RS15750 0.13 +0.1 845,507 - HMPREF1058_RS15750 0.13 -0.3 845,534 + HMPREF1058_RS15750 0.16 +0.6 845,534 + HMPREF1058_RS15750 0.16 -0.5 845,598 - HMPREF1058_RS15750 0.23 -0.2 845,598 - HMPREF1058_RS15750 0.23 +0.3 845,609 - HMPREF1058_RS15750 0.24 -0.0 845,611 - HMPREF1058_RS15750 0.24 -0.5 845,671 + HMPREF1058_RS15750 0.31 +0.4 845,672 - HMPREF1058_RS15750 0.31 -0.2 845,678 - HMPREF1058_RS15750 0.32 -0.1 845,690 + HMPREF1058_RS15750 0.33 +0.6 845,699 - HMPREF1058_RS15750 0.34 -0.2 845,701 - HMPREF1058_RS15750 0.34 -0.3 845,701 - HMPREF1058_RS15750 0.34 -0.2 845,762 - HMPREF1058_RS15750 0.41 +0.4 845,778 + HMPREF1058_RS15750 0.43 -0.1 845,779 - HMPREF1058_RS15750 0.43 +1.1 845,779 - HMPREF1058_RS15750 0.43 +1.2 845,779 - HMPREF1058_RS15750 0.43 +0.7 845,783 - HMPREF1058_RS15750 0.43 -2.1 845,787 - HMPREF1058_RS15750 0.44 +0.5 845,795 + HMPREF1058_RS15750 0.45 +1.0 845,795 + HMPREF1058_RS15750 0.45 -0.4 845,821 - HMPREF1058_RS15750 0.48 -0.6 845,845 - HMPREF1058_RS15750 0.50 -0.1 845,878 + HMPREF1058_RS15750 0.54 -1.9 845,930 + HMPREF1058_RS15750 0.60 -0.7 845,953 - HMPREF1058_RS15750 0.62 -0.8 845,971 + HMPREF1058_RS15750 0.64 +1.1 846,082 + HMPREF1058_RS15750 0.77 -1.4 846,082 + HMPREF1058_RS15750 0.77 -0.1 846,182 - HMPREF1058_RS15750 0.88 -0.5 846,182 - HMPREF1058_RS15750 0.88 -1.0 846,182 - HMPREF1058_RS15750 0.88 -0.0 846,182 - +2.4 846,182 - HMPREF1058_RS15750 0.88 +2.0 846,187 + HMPREF1058_RS15750 0.89 +2.0 846,187 + HMPREF1058_RS15750 0.89 +0.9 846,188 - HMPREF1058_RS15750 0.89 -0.3 846,188 - HMPREF1058_RS15750 0.89 +1.8 846,189 + HMPREF1058_RS15750 0.89 -0.0
Or see this region's nucleotide sequence