Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15380

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15385 and HMPREF1058_RS15380 are separated by 39 nucleotidesHMPREF1058_RS15380 and HMPREF1058_RS15375 are separated by 13 nucleotidesHMPREF1058_RS15375 and HMPREF1058_RS15370 are separated by 193 nucleotides HMPREF1058_RS15385: HMPREF1058_RS15385 - metallophosphoesterase, at 933,927 to 935,087 _RS15385 HMPREF1058_RS15380: HMPREF1058_RS15380 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 935,127 to 935,885 _RS15380 HMPREF1058_RS15375: HMPREF1058_RS15375 - DUF4369 domain-containing protein, at 935,899 to 936,597 _RS15375 HMPREF1058_RS15370: HMPREF1058_RS15370 - S46 family peptidase, at 936,791 to 938,956 _RS15370 Position (kb) 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.205 kb on - strandat 934.206 kb on + strand, within HMPREF1058_RS15385at 934.206 kb on + strand, within HMPREF1058_RS15385at 934.206 kb on + strandat 934.208 kb on + strand, within HMPREF1058_RS15385at 934.239 kb on + strand, within HMPREF1058_RS15385at 934.239 kb on + strand, within HMPREF1058_RS15385at 934.273 kb on + strand, within HMPREF1058_RS15385at 934.276 kb on - strandat 934.279 kb on + strand, within HMPREF1058_RS15385at 934.282 kb on + strand, within HMPREF1058_RS15385at 934.282 kb on + strand, within HMPREF1058_RS15385at 934.283 kb on - strand, within HMPREF1058_RS15385at 934.284 kb on + strand, within HMPREF1058_RS15385at 934.451 kb on + strandat 934.546 kb on + strand, within HMPREF1058_RS15385at 934.546 kb on + strand, within HMPREF1058_RS15385at 934.566 kb on + strand, within HMPREF1058_RS15385at 934.601 kb on + strand, within HMPREF1058_RS15385at 934.688 kb on + strand, within HMPREF1058_RS15385at 934.705 kb on + strand, within HMPREF1058_RS15385at 934.725 kb on - strand, within HMPREF1058_RS15385at 934.725 kb on - strand, within HMPREF1058_RS15385at 934.823 kb on - strand, within HMPREF1058_RS15385at 934.879 kb on + strand, within HMPREF1058_RS15385at 934.880 kb on - strand, within HMPREF1058_RS15385at 934.973 kb on - strandat 934.973 kb on - strandat 935.100 kb on - strandat 935.137 kb on + strandat 935.139 kb on + strandat 935.139 kb on + strandat 935.146 kb on + strandat 935.147 kb on - strandat 935.182 kb on + strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.196 kb on - strandat 935.203 kb on + strand, within HMPREF1058_RS15380at 935.203 kb on + strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.204 kb on - strand, within HMPREF1058_RS15380at 935.207 kb on + strand, within HMPREF1058_RS15380at 935.207 kb on + strand, within HMPREF1058_RS15380at 935.287 kb on - strand, within HMPREF1058_RS15380at 935.287 kb on - strand, within HMPREF1058_RS15380at 935.293 kb on + strand, within HMPREF1058_RS15380at 935.297 kb on + strand, within HMPREF1058_RS15380at 935.315 kb on - strand, within HMPREF1058_RS15380at 935.346 kb on + strand, within HMPREF1058_RS15380at 935.487 kb on - strand, within HMPREF1058_RS15380at 935.488 kb on + strand, within HMPREF1058_RS15380at 935.489 kb on - strand, within HMPREF1058_RS15380at 935.489 kb on - strand, within HMPREF1058_RS15380at 935.499 kb on - strand, within HMPREF1058_RS15380at 935.530 kb on + strand, within HMPREF1058_RS15380at 935.576 kb on - strand, within HMPREF1058_RS15380at 935.621 kb on + strand, within HMPREF1058_RS15380at 935.679 kb on - strand, within HMPREF1058_RS15380at 935.679 kb on - strand, within HMPREF1058_RS15380at 935.694 kb on - strand, within HMPREF1058_RS15380at 935.697 kb on - strand, within HMPREF1058_RS15380at 935.735 kb on + strand, within HMPREF1058_RS15380at 935.749 kb on + strand, within HMPREF1058_RS15380at 935.749 kb on + strand, within HMPREF1058_RS15380at 935.750 kb on - strand, within HMPREF1058_RS15380at 935.750 kb on - strand, within HMPREF1058_RS15380at 935.753 kb on + strandat 935.754 kb on - strand, within HMPREF1058_RS15380at 935.754 kb on - strand, within HMPREF1058_RS15380at 935.883 kb on + strandat 935.901 kb on - strandat 936.074 kb on - strand, within HMPREF1058_RS15375at 936.295 kb on + strand, within HMPREF1058_RS15375at 936.296 kb on - strand, within HMPREF1058_RS15375at 936.405 kb on + strand, within HMPREF1058_RS15375at 936.530 kb on - strandat 936.715 kb on + strandat 936.760 kb on - strandat 936.760 kb on - strandat 936.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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934,205 - +0.6
934,206 + HMPREF1058_RS15385 0.24 +0.0
934,206 + HMPREF1058_RS15385 0.24 -0.5
934,206 + -0.3
934,208 + HMPREF1058_RS15385 0.24 -0.8
934,239 + HMPREF1058_RS15385 0.27 -0.0
934,239 + HMPREF1058_RS15385 0.27 +0.2
934,273 + HMPREF1058_RS15385 0.30 -2.8
934,276 - -0.9
934,279 + HMPREF1058_RS15385 0.30 -0.7
934,282 + HMPREF1058_RS15385 0.31 +0.7
934,282 + HMPREF1058_RS15385 0.31 -1.4
934,283 - HMPREF1058_RS15385 0.31 +0.1
934,284 + HMPREF1058_RS15385 0.31 -0.3
934,451 + -0.6
934,546 + HMPREF1058_RS15385 0.53 -0.4
934,546 + HMPREF1058_RS15385 0.53 -1.4
934,566 + HMPREF1058_RS15385 0.55 +0.0
934,601 + HMPREF1058_RS15385 0.58 +0.2
934,688 + HMPREF1058_RS15385 0.66 -0.8
934,705 + HMPREF1058_RS15385 0.67 -0.4
934,725 - HMPREF1058_RS15385 0.69 -0.4
934,725 - HMPREF1058_RS15385 0.69 -0.4
934,823 - HMPREF1058_RS15385 0.77 -0.2
934,879 + HMPREF1058_RS15385 0.82 -0.8
934,880 - HMPREF1058_RS15385 0.82 -0.0
934,973 - +0.9
934,973 - +0.7
935,100 - +0.3
935,137 + +0.8
935,139 + +1.2
935,139 + -1.1
935,146 + -0.5
935,147 - +0.9
935,182 + +0.4
935,196 - -0.1
935,196 - -0.1
935,196 - +0.6
935,196 - +1.6
935,203 + HMPREF1058_RS15380 0.10 +0.6
935,203 + HMPREF1058_RS15380 0.10 +0.4
935,204 - HMPREF1058_RS15380 0.10 +0.1
935,204 - HMPREF1058_RS15380 0.10 +1.9
935,204 - HMPREF1058_RS15380 0.10 +0.9
935,207 + HMPREF1058_RS15380 0.11 +1.6
935,207 + HMPREF1058_RS15380 0.11 +0.8
935,287 - HMPREF1058_RS15380 0.21 +0.6
935,287 - HMPREF1058_RS15380 0.21 +1.7
935,293 + HMPREF1058_RS15380 0.22 +1.2
935,297 + HMPREF1058_RS15380 0.22 +1.2
935,315 - HMPREF1058_RS15380 0.25 +1.1
935,346 + HMPREF1058_RS15380 0.29 +0.7
935,487 - HMPREF1058_RS15380 0.47 +1.0
935,488 + HMPREF1058_RS15380 0.48 +0.6
935,489 - HMPREF1058_RS15380 0.48 +1.4
935,489 - HMPREF1058_RS15380 0.48 -0.5
935,499 - HMPREF1058_RS15380 0.49 -0.4
935,530 + HMPREF1058_RS15380 0.53 +0.9
935,576 - HMPREF1058_RS15380 0.59 +2.1
935,621 + HMPREF1058_RS15380 0.65 +0.6
935,679 - HMPREF1058_RS15380 0.73 +1.5
935,679 - HMPREF1058_RS15380 0.73 +1.8
935,694 - HMPREF1058_RS15380 0.75 +1.0
935,697 - HMPREF1058_RS15380 0.75 -0.3
935,735 + HMPREF1058_RS15380 0.80 +0.8
935,749 + HMPREF1058_RS15380 0.82 +1.3
935,749 + HMPREF1058_RS15380 0.82 +1.2
935,750 - HMPREF1058_RS15380 0.82 +0.3
935,750 - HMPREF1058_RS15380 0.82 +0.8
935,753 + -0.6
935,754 - HMPREF1058_RS15380 0.83 -0.0
935,754 - HMPREF1058_RS15380 0.83 -0.1
935,883 + +1.0
935,901 - -0.8
936,074 - HMPREF1058_RS15375 0.25 +1.9
936,295 + HMPREF1058_RS15375 0.57 +1.0
936,296 - HMPREF1058_RS15375 0.57 +2.0
936,405 + HMPREF1058_RS15375 0.72 -0.6
936,530 - -0.8
936,715 + +1.0
936,760 - -0.2
936,760 - +1.1
936,862 + +1.0

Or see this region's nucleotide sequence