Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15055

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,029,394	+		HMPREF1058_RS15060	0.38	+1.0
1,029,395	-		HMPREF1058_RS15060	0.38	+2.3
1,029,395	-		HMPREF1058_RS15060	0.38	+0.9
1,029,398	+		HMPREF1058_RS15060	0.38	-1.5
1,029,399	-		HMPREF1058_RS15060	0.39	+0.9
1,029,399	-		HMPREF1058_RS15060	0.39	+1.0
1,029,404	-		HMPREF1058_RS15060	0.39	-0.1
1,029,404	-		HMPREF1058_RS15060	0.39	+1.4
1,029,406	-		HMPREF1058_RS15060	0.39	-0.1
1,029,433	+		HMPREF1058_RS15060	0.41	-0.2
1,029,433	+		HMPREF1058_RS15060	0.41	-0.3
1,029,509	+		HMPREF1058_RS15060	0.47	+0.3
1,029,613	+		HMPREF1058_RS15060	0.54	-0.1
1,029,740	-		HMPREF1058_RS15060	0.64	+0.2
1,029,769	+		HMPREF1058_RS15060	0.66	+0.4
1,029,844	-		HMPREF1058_RS15060	0.71	+0.2
1,029,877	+		HMPREF1058_RS15060	0.74	-0.0
1,029,960	+		HMPREF1058_RS15060	0.80	+0.7
1,029,999	+		HMPREF1058_RS15060	0.83	+0.0
1,029,999	+		HMPREF1058_RS15060	0.83	+0.7
1,030,006	+		HMPREF1058_RS15060	0.83	+0.1
1,030,010	+		HMPREF1058_RS15060	0.84	-0.8
1,030,105	+				+0.8
1,030,105	+				-0.8
1,030,106	-				+1.7
1,030,118	+				-0.2
1,030,179	+				+0.0
1,030,179	+				+0.4
1,030,180	-				+0.7
1,030,182	-				+0.1
1,030,184	-				+1.7
1,030,238	+				-0.1
1,030,238	+				+0.3
1,030,240	+				-0.8
1,030,240	+				+0.4
1,030,457	+		HMPREF1058_RS15055	0.30	+1.7
1,030,458	-		HMPREF1058_RS15055	0.30	+1.5
1,030,547	+		HMPREF1058_RS15055	0.46	+0.8
1,030,575	-		HMPREF1058_RS15055	0.51	+1.2
1,030,581	+		HMPREF1058_RS15055	0.52	-0.3
1,030,582	-		HMPREF1058_RS15055	0.52	+1.0
1,030,582	-		HMPREF1058_RS15055	0.52	+1.2
1,030,583	+		HMPREF1058_RS15055	0.52	+0.0
1,030,601	+		HMPREF1058_RS15055	0.55	+0.4
1,030,602	-		HMPREF1058_RS15055	0.56	+0.9
1,030,606	-		HMPREF1058_RS15055	0.56	+0.4
1,030,707	+		HMPREF1058_RS15055	0.74	+0.6
1,030,707	+		HMPREF1058_RS15055	0.74	+1.0
1,030,708	-		HMPREF1058_RS15055	0.75	+0.4
1,030,715	+		HMPREF1058_RS15055	0.76	+1.3
1,030,729	-		HMPREF1058_RS15055	0.78	-0.5
1,030,889	-				-1.6
1,030,920	-				+2.0
1,030,992	+		HMPREF1058_RS15050	0.11	+0.2
1,031,066	+		HMPREF1058_RS15050	0.17	+0.4
1,031,066	+		HMPREF1058_RS15050	0.17	+1.7
1,031,211	-		HMPREF1058_RS15050	0.31	+1.1
1,031,262	-		HMPREF1058_RS15050	0.35	-0.5
1,031,283	+		HMPREF1058_RS15050	0.37	+0.4
1,031,297	+		HMPREF1058_RS15050	0.39	-1.0
1,031,329	+		HMPREF1058_RS15050	0.42	-1.3
1,031,329	+		HMPREF1058_RS15050	0.42	+1.1
1,031,337	+		HMPREF1058_RS15050	0.42	-0.2
1,031,344	-		HMPREF1058_RS15050	0.43	-0.3
1,031,344	-				+0.3
1,031,410	+		HMPREF1058_RS15050	0.49	+1.1
1,031,410	+		HMPREF1058_RS15050	0.49	-1.4
1,031,410	+		HMPREF1058_RS15050	0.49	-0.2
1,031,424	-				+0.3
1,031,454	+		HMPREF1058_RS15050	0.53	+0.4
1,031,456	+		HMPREF1058_RS15050	0.53	+2.4
1,031,546	+		HMPREF1058_RS15050	0.61	+1.1
1,031,547	-		HMPREF1058_RS15050	0.62	-0.6
1,031,547	-		HMPREF1058_RS15050	0.62	-0.6
1,031,562	-		HMPREF1058_RS15050	0.63	+0.6
1,031,562	-		HMPREF1058_RS15050	0.63	+0.1
1,031,562	-		HMPREF1058_RS15050	0.63	+1.4
1,031,589	+		HMPREF1058_RS15050	0.65	-0.5
1,031,590	-		HMPREF1058_RS15050	0.65	-0.7
1,031,706	-		HMPREF1058_RS15050	0.76	-0.7
1,031,706	-		HMPREF1058_RS15050	0.76	+1.2
1,031,729	+		HMPREF1058_RS15050	0.78	-0.4
1,031,751	-		HMPREF1058_RS15050	0.80	-2.2