Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15045

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,031,211	-		HMPREF1058_RS15050	0.31	+1.1
1,031,262	-		HMPREF1058_RS15050	0.35	-0.5
1,031,283	+		HMPREF1058_RS15050	0.37	+0.4
1,031,297	+		HMPREF1058_RS15050	0.39	-1.0
1,031,329	+		HMPREF1058_RS15050	0.42	-1.3
1,031,329	+		HMPREF1058_RS15050	0.42	+1.1
1,031,337	+		HMPREF1058_RS15050	0.42	-0.2
1,031,344	-		HMPREF1058_RS15050	0.43	-0.3
1,031,344	-				+0.3
1,031,410	+		HMPREF1058_RS15050	0.49	+1.1
1,031,410	+		HMPREF1058_RS15050	0.49	-1.4
1,031,410	+		HMPREF1058_RS15050	0.49	-0.2
1,031,424	-				+0.3
1,031,454	+		HMPREF1058_RS15050	0.53	+0.4
1,031,456	+		HMPREF1058_RS15050	0.53	+2.4
1,031,546	+		HMPREF1058_RS15050	0.61	+1.1
1,031,547	-		HMPREF1058_RS15050	0.62	-0.6
1,031,547	-		HMPREF1058_RS15050	0.62	-0.6
1,031,562	-		HMPREF1058_RS15050	0.63	+0.6
1,031,562	-		HMPREF1058_RS15050	0.63	+0.1
1,031,562	-		HMPREF1058_RS15050	0.63	+1.4
1,031,589	+		HMPREF1058_RS15050	0.65	-0.5
1,031,590	-		HMPREF1058_RS15050	0.65	-0.7
1,031,706	-		HMPREF1058_RS15050	0.76	-0.7
1,031,706	-		HMPREF1058_RS15050	0.76	+1.2
1,031,729	+		HMPREF1058_RS15050	0.78	-0.4
1,031,751	-		HMPREF1058_RS15050	0.80	-2.2
1,031,860	+				+0.7
1,031,867	-				+1.7
1,031,889	+				+0.5
1,031,890	-				-1.0
1,031,910	-				+0.7
1,031,955	-				-1.1
1,031,978	+				-0.1
1,031,981	+				-1.2
1,032,014	-				-0.1
1,032,067	+				+0.5
1,032,068	-				-0.9
1,032,106	+				-1.2
1,032,131	+				+0.2
1,032,234	+				+1.3
1,032,235	-				-0.3
1,032,246	-				+0.1
1,032,246	-				-1.1
1,032,316	+				+1.2
1,032,581	+		HMPREF1058_RS15045	0.17	+1.1
1,032,582	-		HMPREF1058_RS15045	0.17	+0.2
1,032,618	+		HMPREF1058_RS15045	0.19	+0.8
1,032,619	-		HMPREF1058_RS15045	0.19	+0.7
1,032,679	-		HMPREF1058_RS15045	0.21	+1.0
1,032,679	-		HMPREF1058_RS15045	0.21	-0.3
1,032,704	+		HMPREF1058_RS15045	0.22	-0.1
1,032,705	-		HMPREF1058_RS15045	0.22	+0.3
1,032,705	-		HMPREF1058_RS15045	0.22	+1.3
1,032,707	-		HMPREF1058_RS15045	0.22	-0.2
1,032,721	-		HMPREF1058_RS15045	0.23	+1.1
1,032,860	+		HMPREF1058_RS15045	0.29	-0.3
1,032,956	+		HMPREF1058_RS15045	0.33	+1.3
1,032,957	-		HMPREF1058_RS15045	0.33	-0.5
1,032,958	+		HMPREF1058_RS15045	0.33	+0.2
1,032,978	+		HMPREF1058_RS15045	0.33	+0.1
1,032,978	+		HMPREF1058_RS15045	0.33	+0.5
1,032,978	+		HMPREF1058_RS15045	0.33	-0.4
1,033,086	+		HMPREF1058_RS15045	0.38	+0.1
1,033,087	-		HMPREF1058_RS15045	0.38	+0.7
1,033,163	+		HMPREF1058_RS15045	0.41	+0.9
1,033,163	+		HMPREF1058_RS15045	0.41	+0.7
1,033,163	+		HMPREF1058_RS15045	0.41	+0.6
1,033,164	-		HMPREF1058_RS15045	0.41	+0.3
1,033,165	+		HMPREF1058_RS15045	0.41	+1.1
1,033,167	+		HMPREF1058_RS15045	0.41	+1.1
1,033,167	+		HMPREF1058_RS15045	0.41	+0.5
1,033,167	+		HMPREF1058_RS15045	0.41	+0.9
1,033,168	-		HMPREF1058_RS15045	0.41	+1.0
1,033,168	-		HMPREF1058_RS15045	0.41	+0.6
1,033,168	-		HMPREF1058_RS15045	0.41	+1.3
1,033,168	-		HMPREF1058_RS15045	0.41	+0.5
1,033,171	+		HMPREF1058_RS15045	0.41	+1.9
1,033,171	+		HMPREF1058_RS15045	0.41	-0.4
1,033,172	-		HMPREF1058_RS15045	0.41	-0.3
1,033,172	-		HMPREF1058_RS15045	0.41	+0.4
1,033,172	-		HMPREF1058_RS15045	0.41	+0.9
1,033,172	-		HMPREF1058_RS15045	0.41	+0.4
1,033,172	-		HMPREF1058_RS15045	0.41	+2.6
1,033,174	-		HMPREF1058_RS15045	0.42	-0.4
1,033,174	-		HMPREF1058_RS15045	0.42	+0.5
1,033,174	-		HMPREF1058_RS15045	0.42	+0.0
1,033,276	-		HMPREF1058_RS15045	0.46	+0.9
1,033,292	-		HMPREF1058_RS15045	0.46	+0.0
1,033,360	+		HMPREF1058_RS15045	0.49	+0.9
1,033,361	-		HMPREF1058_RS15045	0.49	+0.6
1,033,361	-		HMPREF1058_RS15045	0.49	-0.1
1,033,361	-		HMPREF1058_RS15045	0.49	+0.5
1,033,364	-		HMPREF1058_RS15045	0.49	+0.6
1,033,475	-		HMPREF1058_RS15045	0.54	-0.1
1,033,478	-		HMPREF1058_RS15045	0.54	+0.3
1,033,487	-		HMPREF1058_RS15045	0.54	+0.4
1,033,575	-		HMPREF1058_RS15045	0.58	+0.2
1,033,658	+		HMPREF1058_RS15045	0.62	+0.8
1,033,658	+		HMPREF1058_RS15045	0.62	+0.1
1,033,658	+		HMPREF1058_RS15045	0.62	+1.2
1,033,659	-		HMPREF1058_RS15045	0.62	+0.0
1,033,659	-		HMPREF1058_RS15045	0.62	+0.2
1,033,659	-		HMPREF1058_RS15045	0.62	+0.4
1,033,711	+		HMPREF1058_RS15045	0.64	-1.1
1,033,753	+		HMPREF1058_RS15045	0.65	+0.5
1,033,836	+		HMPREF1058_RS15045	0.69	+0.9
1,033,919	-		HMPREF1058_RS15045	0.72	+0.5
1,033,944	+		HMPREF1058_RS15045	0.73	+0.3
1,033,944	+		HMPREF1058_RS15045	0.73	+0.3
1,033,944	+		HMPREF1058_RS15045	0.73	+0.2
1,033,944	+		HMPREF1058_RS15045	0.73	+0.1
1,033,945	-		HMPREF1058_RS15045	0.73	+1.4
1,033,945	-		HMPREF1058_RS15045	0.73	-0.2
1,033,989	-		HMPREF1058_RS15045	0.75	-0.2
1,033,989	-		HMPREF1058_RS15045	0.75	+1.9
1,034,064	+		HMPREF1058_RS15045	0.78	+0.7
1,034,081	+		HMPREF1058_RS15045	0.79	+2.1
1,034,139	+		HMPREF1058_RS15045	0.81	+0.5
1,034,251	+		HMPREF1058_RS15045	0.86	+0.4
1,034,254	-		HMPREF1058_RS15045	0.86	-1.7
1,034,303	+		HMPREF1058_RS15045	0.88	+0.5
1,034,304	-		HMPREF1058_RS15045	0.88	-0.4
1,034,323	-		HMPREF1058_RS15045	0.89	+0.6
1,034,349	-				+1.0
1,034,362	-				+1.4
1,034,403	-				+0.9
1,034,446	-				+0.1
1,034,501	-				+0.1
1,034,539	+				+0.6
1,034,540	-				-0.2
1,034,563	-				-0.4
1,034,592	+				+0.6
1,034,597	-				-1.0
1,034,602	+				+0.7
1,034,670	+				-1.0
1,034,732	+				-0.1
1,034,785	-				-1.1
1,034,823	+				+1.2
1,034,857	-				+1.0
1,034,949	+		HMPREF1058_RS15040	0.15	+1.4
1,035,146	-		HMPREF1058_RS15040	0.39	+0.1
1,035,195	-		HMPREF1058_RS15040	0.45	-0.2
1,035,222	+		HMPREF1058_RS15040	0.48	+0.1
1,035,222	+		HMPREF1058_RS15040	0.48	-0.4
1,035,295	+				+0.4
1,035,295	+		HMPREF1058_RS15040	0.57	-0.5
1,035,341	+		HMPREF1058_RS15040	0.62	-0.1
1,035,341	+		HMPREF1058_RS15040	0.62	+0.9
1,035,466	-		HMPREF1058_RS15040	0.77	-0.1