Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14845

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14850 and HMPREF1058_RS14845 are separated by 329 nucleotidesHMPREF1058_RS14845 and HMPREF1058_RS14840 are separated by 28 nucleotides HMPREF1058_RS14850: HMPREF1058_RS14850 - patatin family protein, at 1,086,628 to 1,087,482 _RS14850 HMPREF1058_RS14845: HMPREF1058_RS14845 - aminopeptidase P family protein, at 1,087,812 to 1,089,203 _RS14845 HMPREF1058_RS14840: HMPREF1058_RS14840 - aminopeptidase, at 1,089,232 to 1,090,443 _RS14840 Position (kb) 1087 1088 1089 1090Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1086.813 kb on - strand, within HMPREF1058_RS14850at 1086.868 kb on - strand, within HMPREF1058_RS14850at 1086.885 kb on + strand, within HMPREF1058_RS14850at 1086.926 kb on - strandat 1087.016 kb on - strand, within HMPREF1058_RS14850at 1087.019 kb on + strand, within HMPREF1058_RS14850at 1087.020 kb on - strand, within HMPREF1058_RS14850at 1087.020 kb on - strand, within HMPREF1058_RS14850at 1087.020 kb on - strand, within HMPREF1058_RS14850at 1087.024 kb on + strand, within HMPREF1058_RS14850at 1087.025 kb on - strand, within HMPREF1058_RS14850at 1087.060 kb on - strand, within HMPREF1058_RS14850at 1087.060 kb on - strand, within HMPREF1058_RS14850at 1087.074 kb on + strand, within HMPREF1058_RS14850at 1087.103 kb on + strand, within HMPREF1058_RS14850at 1087.128 kb on + strand, within HMPREF1058_RS14850at 1087.174 kb on - strand, within HMPREF1058_RS14850at 1087.176 kb on - strand, within HMPREF1058_RS14850at 1087.181 kb on + strand, within HMPREF1058_RS14850at 1087.258 kb on + strand, within HMPREF1058_RS14850at 1087.312 kb on - strand, within HMPREF1058_RS14850at 1087.329 kb on + strand, within HMPREF1058_RS14850at 1087.331 kb on + strand, within HMPREF1058_RS14850at 1087.331 kb on + strand, within HMPREF1058_RS14850at 1087.332 kb on - strand, within HMPREF1058_RS14850at 1087.401 kb on + strandat 1087.401 kb on + strandat 1087.402 kb on - strandat 1087.402 kb on - strandat 1087.402 kb on - strandat 1087.403 kb on + strandat 1087.404 kb on - strandat 1087.437 kb on + strandat 1087.573 kb on - strandat 1087.597 kb on - strandat 1087.622 kb on - strandat 1087.626 kb on + strandat 1087.757 kb on - strandat 1087.761 kb on - strandat 1087.764 kb on - strandat 1087.875 kb on - strandat 1087.883 kb on + strandat 1087.888 kb on + strandat 1087.889 kb on - strandat 1087.889 kb on - strandat 1087.895 kb on + strandat 1087.929 kb on + strandat 1087.932 kb on - strandat 1087.987 kb on - strand, within HMPREF1058_RS14845at 1087.996 kb on + strand, within HMPREF1058_RS14845at 1087.996 kb on + strand, within HMPREF1058_RS14845at 1087.999 kb on + strand, within HMPREF1058_RS14845at 1088.000 kb on - strand, within HMPREF1058_RS14845at 1088.000 kb on - strandat 1088.003 kb on + strand, within HMPREF1058_RS14845at 1088.004 kb on - strand, within HMPREF1058_RS14845at 1088.005 kb on + strand, within HMPREF1058_RS14845at 1088.005 kb on + strandat 1088.006 kb on - strand, within HMPREF1058_RS14845at 1088.023 kb on - strand, within HMPREF1058_RS14845at 1088.041 kb on + strand, within HMPREF1058_RS14845at 1088.045 kb on + strand, within HMPREF1058_RS14845at 1088.104 kb on + strand, within HMPREF1058_RS14845at 1088.105 kb on - strand, within HMPREF1058_RS14845at 1088.105 kb on - strand, within HMPREF1058_RS14845at 1088.172 kb on - strand, within HMPREF1058_RS14845at 1088.210 kb on + strand, within HMPREF1058_RS14845at 1088.251 kb on + strand, within HMPREF1058_RS14845at 1088.251 kb on + strand, within HMPREF1058_RS14845at 1088.262 kb on + strand, within HMPREF1058_RS14845at 1088.263 kb on - strand, within HMPREF1058_RS14845at 1088.300 kb on - strand, within HMPREF1058_RS14845at 1088.386 kb on + strand, within HMPREF1058_RS14845at 1088.390 kb on + strand, within HMPREF1058_RS14845at 1088.390 kb on + strand, within HMPREF1058_RS14845at 1088.412 kb on + strand, within HMPREF1058_RS14845at 1088.412 kb on + strand, within HMPREF1058_RS14845at 1088.412 kb on + strand, within HMPREF1058_RS14845at 1088.412 kb on + strand, within HMPREF1058_RS14845at 1088.413 kb on - strand, within HMPREF1058_RS14845at 1088.413 kb on - strand, within HMPREF1058_RS14845at 1088.501 kb on - strand, within HMPREF1058_RS14845at 1088.501 kb on - strand, within HMPREF1058_RS14845at 1088.505 kb on - strand, within HMPREF1058_RS14845at 1088.522 kb on + strand, within HMPREF1058_RS14845at 1088.523 kb on - strand, within HMPREF1058_RS14845at 1088.523 kb on - strand, within HMPREF1058_RS14845at 1088.523 kb on - strand, within HMPREF1058_RS14845at 1088.523 kb on - strand, within HMPREF1058_RS14845at 1088.523 kb on - strand, within HMPREF1058_RS14845at 1088.525 kb on - strand, within HMPREF1058_RS14845at 1088.525 kb on - strand, within HMPREF1058_RS14845at 1088.525 kb on - strand, within HMPREF1058_RS14845at 1088.528 kb on - strand, within HMPREF1058_RS14845at 1088.581 kb on - strand, within HMPREF1058_RS14845at 1088.646 kb on + strand, within HMPREF1058_RS14845at 1088.646 kb on + strand, within HMPREF1058_RS14845at 1088.646 kb on + strand, within HMPREF1058_RS14845at 1088.646 kb on + strand, within HMPREF1058_RS14845at 1088.687 kb on + strand, within HMPREF1058_RS14845at 1088.706 kb on + strand, within HMPREF1058_RS14845at 1088.707 kb on - strand, within HMPREF1058_RS14845at 1088.707 kb on - strand, within HMPREF1058_RS14845at 1088.707 kb on - strand, within HMPREF1058_RS14845at 1088.707 kb on - strand, within HMPREF1058_RS14845at 1088.707 kb on - strand, within HMPREF1058_RS14845at 1088.709 kb on - strand, within HMPREF1058_RS14845at 1088.716 kb on + strand, within HMPREF1058_RS14845at 1088.752 kb on + strand, within HMPREF1058_RS14845at 1088.834 kb on - strand, within HMPREF1058_RS14845at 1088.840 kb on + strandat 1088.858 kb on - strand, within HMPREF1058_RS14845at 1088.858 kb on - strand, within HMPREF1058_RS14845at 1089.188 kb on + strandat 1089.206 kb on + strandat 1089.207 kb on - strandat 1089.244 kb on - strandat 1089.274 kb on - strandat 1089.274 kb on - strandat 1089.275 kb on + strandat 1089.276 kb on - strandat 1089.337 kb on - strandat 1089.357 kb on + strand, within HMPREF1058_RS14840at 1089.388 kb on - strand, within HMPREF1058_RS14840at 1089.401 kb on - strand, within HMPREF1058_RS14840at 1089.432 kb on - strand, within HMPREF1058_RS14840at 1089.515 kb on + strand, within HMPREF1058_RS14840at 1089.560 kb on - strand, within HMPREF1058_RS14840at 1089.629 kb on - strand, within HMPREF1058_RS14840at 1089.629 kb on - strand, within HMPREF1058_RS14840at 1089.636 kb on + strand, within HMPREF1058_RS14840at 1089.636 kb on + strand, within HMPREF1058_RS14840at 1089.641 kb on + strand, within HMPREF1058_RS14840at 1089.641 kb on + strand, within HMPREF1058_RS14840at 1089.681 kb on - strand, within HMPREF1058_RS14840at 1089.727 kb on - strand, within HMPREF1058_RS14840at 1089.735 kb on + strand, within HMPREF1058_RS14840at 1089.778 kb on + strand, within HMPREF1058_RS14840at 1089.778 kb on + strand, within HMPREF1058_RS14840at 1089.778 kb on + strand, within HMPREF1058_RS14840at 1089.779 kb on - strand, within HMPREF1058_RS14840at 1089.779 kb on - strand, within HMPREF1058_RS14840at 1089.779 kb on - strand, within HMPREF1058_RS14840at 1089.808 kb on + strand, within HMPREF1058_RS14840at 1089.811 kb on - strand, within HMPREF1058_RS14840at 1089.823 kb on + strand, within HMPREF1058_RS14840at 1089.907 kb on + strand, within HMPREF1058_RS14840at 1089.958 kb on + strand, within HMPREF1058_RS14840at 1089.958 kb on + strand, within HMPREF1058_RS14840at 1089.958 kb on + strand, within HMPREF1058_RS14840at 1090.057 kb on - strand, within HMPREF1058_RS14840at 1090.070 kb on + strand, within HMPREF1058_RS14840at 1090.106 kb on + strand, within HMPREF1058_RS14840at 1090.191 kb on + strand, within HMPREF1058_RS14840at 1090.191 kb on + strand, within HMPREF1058_RS14840

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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1,086,813 - HMPREF1058_RS14850 0.22 -0.1
1,086,868 - HMPREF1058_RS14850 0.28 -0.4
1,086,885 + HMPREF1058_RS14850 0.30 +0.3
1,086,926 - +0.4
1,087,016 - HMPREF1058_RS14850 0.45 +0.6
1,087,019 + HMPREF1058_RS14850 0.46 +0.1
1,087,020 - HMPREF1058_RS14850 0.46 -0.5
1,087,020 - HMPREF1058_RS14850 0.46 +0.7
1,087,020 - HMPREF1058_RS14850 0.46 -0.2
1,087,024 + HMPREF1058_RS14850 0.46 +0.9
1,087,025 - HMPREF1058_RS14850 0.46 +1.8
1,087,060 - HMPREF1058_RS14850 0.51 -0.8
1,087,060 - HMPREF1058_RS14850 0.51 -0.3
1,087,074 + HMPREF1058_RS14850 0.52 -0.7
1,087,103 + HMPREF1058_RS14850 0.56 -0.4
1,087,128 + HMPREF1058_RS14850 0.58 -0.5
1,087,174 - HMPREF1058_RS14850 0.64 +1.0
1,087,176 - HMPREF1058_RS14850 0.64 +0.0
1,087,181 + HMPREF1058_RS14850 0.65 +0.1
1,087,258 + HMPREF1058_RS14850 0.74 -0.3
1,087,312 - HMPREF1058_RS14850 0.80 +0.8
1,087,329 + HMPREF1058_RS14850 0.82 +0.3
1,087,331 + HMPREF1058_RS14850 0.82 +3.2
1,087,331 + HMPREF1058_RS14850 0.82 -1.2
1,087,332 - HMPREF1058_RS14850 0.82 +0.5
1,087,401 + -1.5
1,087,401 + -0.3
1,087,402 - -0.3
1,087,402 - -0.4
1,087,402 - +0.4
1,087,403 + +0.0
1,087,404 - -0.3
1,087,437 + -0.1
1,087,573 - -0.5
1,087,597 - -0.3
1,087,622 - +1.2
1,087,626 + +0.4
1,087,757 - +2.2
1,087,761 - -0.4
1,087,764 - -0.3
1,087,875 - +1.4
1,087,883 + +1.4
1,087,888 + +1.1
1,087,889 - +0.3
1,087,889 - -1.0
1,087,895 + +0.1
1,087,929 + +1.1
1,087,932 - -0.6
1,087,987 - HMPREF1058_RS14845 0.13 +1.0
1,087,996 + HMPREF1058_RS14845 0.13 -0.8
1,087,996 + HMPREF1058_RS14845 0.13 +0.1
1,087,999 + HMPREF1058_RS14845 0.13 -0.2
1,088,000 - HMPREF1058_RS14845 0.14 +0.5
1,088,000 - +1.2
1,088,003 + HMPREF1058_RS14845 0.14 +1.8
1,088,004 - HMPREF1058_RS14845 0.14 +0.8
1,088,005 + HMPREF1058_RS14845 0.14 +0.1
1,088,005 + +0.0
1,088,006 - HMPREF1058_RS14845 0.14 +1.5
1,088,023 - HMPREF1058_RS14845 0.15 +0.5
1,088,041 + HMPREF1058_RS14845 0.16 -0.1
1,088,045 + HMPREF1058_RS14845 0.17 +1.1
1,088,104 + HMPREF1058_RS14845 0.21 -1.2
1,088,105 - HMPREF1058_RS14845 0.21 +2.9
1,088,105 - HMPREF1058_RS14845 0.21 -2.5
1,088,172 - HMPREF1058_RS14845 0.26 +1.6
1,088,210 + HMPREF1058_RS14845 0.29 +0.3
1,088,251 + HMPREF1058_RS14845 0.32 +0.3
1,088,251 + HMPREF1058_RS14845 0.32 -0.1
1,088,262 + HMPREF1058_RS14845 0.32 -0.2
1,088,263 - HMPREF1058_RS14845 0.32 +0.2
1,088,300 - HMPREF1058_RS14845 0.35 -0.3
1,088,386 + HMPREF1058_RS14845 0.41 +1.0
1,088,390 + HMPREF1058_RS14845 0.42 -0.1
1,088,390 + HMPREF1058_RS14845 0.42 -1.9
1,088,412 + HMPREF1058_RS14845 0.43 +0.3
1,088,412 + HMPREF1058_RS14845 0.43 +1.1
1,088,412 + HMPREF1058_RS14845 0.43 +0.7
1,088,412 + HMPREF1058_RS14845 0.43 +0.9
1,088,413 - HMPREF1058_RS14845 0.43 +3.0
1,088,413 - HMPREF1058_RS14845 0.43 -0.9
1,088,501 - HMPREF1058_RS14845 0.49 +0.3
1,088,501 - HMPREF1058_RS14845 0.49 +0.8
1,088,505 - HMPREF1058_RS14845 0.50 -0.1
1,088,522 + HMPREF1058_RS14845 0.51 +0.3
1,088,523 - HMPREF1058_RS14845 0.51 +1.0
1,088,523 - HMPREF1058_RS14845 0.51 +2.3
1,088,523 - HMPREF1058_RS14845 0.51 +0.7
1,088,523 - HMPREF1058_RS14845 0.51 +0.6
1,088,523 - HMPREF1058_RS14845 0.51 +0.8
1,088,525 - HMPREF1058_RS14845 0.51 +0.4
1,088,525 - HMPREF1058_RS14845 0.51 +0.1
1,088,525 - HMPREF1058_RS14845 0.51 +0.5
1,088,528 - HMPREF1058_RS14845 0.51 +0.5
1,088,581 - HMPREF1058_RS14845 0.55 -0.4
1,088,646 + HMPREF1058_RS14845 0.60 +0.5
1,088,646 + HMPREF1058_RS14845 0.60 -0.0
1,088,646 + HMPREF1058_RS14845 0.60 +0.2
1,088,646 + HMPREF1058_RS14845 0.60 -0.4
1,088,687 + HMPREF1058_RS14845 0.63 +0.3
1,088,706 + HMPREF1058_RS14845 0.64 -0.3
1,088,707 - HMPREF1058_RS14845 0.64 +0.3
1,088,707 - HMPREF1058_RS14845 0.64 +2.5
1,088,707 - HMPREF1058_RS14845 0.64 +1.3
1,088,707 - HMPREF1058_RS14845 0.64 +0.6
1,088,707 - HMPREF1058_RS14845 0.64 -0.2
1,088,709 - HMPREF1058_RS14845 0.64 +2.6
1,088,716 + HMPREF1058_RS14845 0.65 +1.6
1,088,752 + HMPREF1058_RS14845 0.68 +0.7
1,088,834 - HMPREF1058_RS14845 0.73 +1.0
1,088,840 + +1.0
1,088,858 - HMPREF1058_RS14845 0.75 +0.6
1,088,858 - HMPREF1058_RS14845 0.75 +1.0
1,089,188 + -0.1
1,089,206 + +0.3
1,089,207 - -1.0
1,089,244 - +0.4
1,089,274 - +0.8
1,089,274 - +0.2
1,089,275 + -0.1
1,089,276 - -1.6
1,089,337 - +3.7
1,089,357 + HMPREF1058_RS14840 0.10 +0.4
1,089,388 - HMPREF1058_RS14840 0.13 +0.8
1,089,401 - HMPREF1058_RS14840 0.14 -0.8
1,089,432 - HMPREF1058_RS14840 0.17 +0.0
1,089,515 + HMPREF1058_RS14840 0.23 -0.8
1,089,560 - HMPREF1058_RS14840 0.27 -1.1
1,089,629 - HMPREF1058_RS14840 0.33 +1.0
1,089,629 - HMPREF1058_RS14840 0.33 -0.3
1,089,636 + HMPREF1058_RS14840 0.33 -0.2
1,089,636 + HMPREF1058_RS14840 0.33 +0.0
1,089,641 + HMPREF1058_RS14840 0.34 +0.0
1,089,641 + HMPREF1058_RS14840 0.34 -1.6
1,089,681 - HMPREF1058_RS14840 0.37 -1.1
1,089,727 - HMPREF1058_RS14840 0.41 +0.7
1,089,735 + HMPREF1058_RS14840 0.42 +0.1
1,089,778 + HMPREF1058_RS14840 0.45 -0.4
1,089,778 + HMPREF1058_RS14840 0.45 -0.6
1,089,778 + HMPREF1058_RS14840 0.45 -0.4
1,089,779 - HMPREF1058_RS14840 0.45 +0.1
1,089,779 - HMPREF1058_RS14840 0.45 +0.4
1,089,779 - HMPREF1058_RS14840 0.45 +0.1
1,089,808 + HMPREF1058_RS14840 0.48 -0.3
1,089,811 - HMPREF1058_RS14840 0.48 +1.5
1,089,823 + HMPREF1058_RS14840 0.49 +0.4
1,089,907 + HMPREF1058_RS14840 0.56 -0.1
1,089,958 + HMPREF1058_RS14840 0.60 -0.0
1,089,958 + HMPREF1058_RS14840 0.60 +0.6
1,089,958 + HMPREF1058_RS14840 0.60 -0.1
1,090,057 - HMPREF1058_RS14840 0.68 +2.3
1,090,070 + HMPREF1058_RS14840 0.69 -0.2
1,090,106 + HMPREF1058_RS14840 0.72 -0.2
1,090,191 + HMPREF1058_RS14840 0.79 +0.0
1,090,191 + HMPREF1058_RS14840 0.79 -0.5

Or see this region's nucleotide sequence