Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14835

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,089,629	-		HMPREF1058_RS14840	0.33	+1.0
1,089,629	-		HMPREF1058_RS14840	0.33	-0.3
1,089,636	+		HMPREF1058_RS14840	0.33	-0.2
1,089,636	+		HMPREF1058_RS14840	0.33	+0.0
1,089,641	+		HMPREF1058_RS14840	0.34	+0.0
1,089,641	+		HMPREF1058_RS14840	0.34	-1.6
1,089,681	-		HMPREF1058_RS14840	0.37	-1.1
1,089,727	-		HMPREF1058_RS14840	0.41	+0.7
1,089,735	+		HMPREF1058_RS14840	0.42	+0.1
1,089,778	+		HMPREF1058_RS14840	0.45	-0.4
1,089,778	+		HMPREF1058_RS14840	0.45	-0.6
1,089,778	+		HMPREF1058_RS14840	0.45	-0.4
1,089,779	-		HMPREF1058_RS14840	0.45	+0.1
1,089,779	-		HMPREF1058_RS14840	0.45	+0.4
1,089,779	-		HMPREF1058_RS14840	0.45	+0.1
1,089,808	+		HMPREF1058_RS14840	0.48	-0.3
1,089,811	-		HMPREF1058_RS14840	0.48	+1.5
1,089,823	+		HMPREF1058_RS14840	0.49	+0.4
1,089,907	+		HMPREF1058_RS14840	0.56	-0.1
1,089,958	+		HMPREF1058_RS14840	0.60	-0.0
1,089,958	+		HMPREF1058_RS14840	0.60	+0.6
1,089,958	+		HMPREF1058_RS14840	0.60	-0.1
1,090,057	-		HMPREF1058_RS14840	0.68	+2.3
1,090,070	+		HMPREF1058_RS14840	0.69	-0.2
1,090,106	+		HMPREF1058_RS14840	0.72	-0.2
1,090,191	+		HMPREF1058_RS14840	0.79	+0.0
1,090,191	+		HMPREF1058_RS14840	0.79	-0.5
1,090,248	+		HMPREF1058_RS14840	0.84	-0.3
1,090,248	+		HMPREF1058_RS14840	0.84	+0.8
1,090,249	-		HMPREF1058_RS14840	0.84	+1.0
1,090,249	-		HMPREF1058_RS14840	0.84	+1.3
1,090,249	-		HMPREF1058_RS14840	0.84	-0.9
1,090,265	+		HMPREF1058_RS14840	0.85	-1.3
1,090,294	+		HMPREF1058_RS14840	0.88	-0.4
1,090,294	+		HMPREF1058_RS14840	0.88	-0.6
1,090,295	-		HMPREF1058_RS14840	0.88	+0.5
1,090,297	-		HMPREF1058_RS14840	0.88	+0.6
1,090,340	+				-0.6
1,090,341	-				+0.5
1,090,354	-				-0.1
1,090,354	-				+1.2
1,090,454	+				+0.8
1,090,603	+				+1.2
1,090,854	+		HMPREF1058_RS14835	0.14	+0.7
1,090,965	+		HMPREF1058_RS14835	0.21	+2.3
1,091,132	+		HMPREF1058_RS14835	0.30	+0.8
1,091,132	+		HMPREF1058_RS14835	0.30	+1.8
1,091,178	+		HMPREF1058_RS14835	0.33	-0.5
1,091,178	+		HMPREF1058_RS14835	0.33	+1.8
1,091,178	+		HMPREF1058_RS14835	0.33	+1.5
1,091,178	+		HMPREF1058_RS14835	0.33	-1.5
1,091,182	+		HMPREF1058_RS14835	0.33	+1.0
1,091,247	+		HMPREF1058_RS14835	0.37	+1.7
1,091,492	+		HMPREF1058_RS14835	0.51	+0.5
1,091,737	+		HMPREF1058_RS14835	0.66	+0.8
1,091,935	+		HMPREF1058_RS14835	0.77	+0.7
1,092,095	+		HMPREF1058_RS14835	0.86	+1.1
1,092,103	+		HMPREF1058_RS14835	0.87	+1.9
1,092,220	+				-0.7
1,092,255	+				+2.6
1,092,309	+				+0.4
1,092,342	+				+0.9
1,092,353	+				+0.0
1,092,397	+				-0.4
1,092,405	+				-2.2
1,092,405	+				-0.1