Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14500

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,184,892	-				+1.4
1,184,899	-				+2.0
1,184,899	-				-1.2
1,184,917	+				+0.8
1,184,934	+				-0.2
1,185,000	+				+2.0
1,185,054	+		HMPREF1058_RS14505	0.15	+1.0
1,185,264	+		HMPREF1058_RS14505	0.40	-1.1
1,185,289	+		HMPREF1058_RS14505	0.43	+0.6
1,185,289	+		HMPREF1058_RS14505	0.43	+3.8
1,185,412	-		HMPREF1058_RS14505	0.58	+1.1
1,185,413	+		HMPREF1058_RS14505	0.58	-0.0
1,185,414	-		HMPREF1058_RS14505	0.58	+1.5
1,185,414	-		HMPREF1058_RS14505	0.58	+0.2
1,185,480	+		HMPREF1058_RS14505	0.66	-2.0
1,185,480	+		HMPREF1058_RS14505	0.66	+2.2
1,185,504	-		HMPREF1058_RS14505	0.69	+1.1
1,185,517	+		HMPREF1058_RS14505	0.71	+1.5
1,185,520	+		HMPREF1058_RS14505	0.71	-0.4
1,185,520	+		HMPREF1058_RS14505	0.71	-0.0
1,185,559	+		HMPREF1058_RS14505	0.76	-0.0
1,185,566	-		HMPREF1058_RS14505	0.77	-0.5
1,185,621	+		HMPREF1058_RS14505	0.83	+1.2
1,185,621	+		HMPREF1058_RS14505	0.83	-1.5
1,185,625	+		HMPREF1058_RS14505	0.84	-0.6
1,185,748	-				+1.1
1,185,841	-				-0.4
1,185,937	-				+1.1
1,185,937	-				+0.5
1,186,026	+		HMPREF1058_RS14500	0.14	+1.0
1,186,026	+		HMPREF1058_RS14500	0.14	+1.3
1,186,027	-		HMPREF1058_RS14500	0.14	+0.9
1,186,027	-		HMPREF1058_RS14500	0.14	+0.6
1,186,027	-		HMPREF1058_RS14500	0.14	-1.6
1,186,027	-		HMPREF1058_RS14500	0.14	-0.2
1,186,049	+		HMPREF1058_RS14500	0.16	+0.9
1,186,060	+		HMPREF1058_RS14500	0.17	+0.1
1,186,060	+		HMPREF1058_RS14500	0.17	+2.0
1,186,120	-		HMPREF1058_RS14500	0.22	+1.2
1,186,149	+		HMPREF1058_RS14500	0.25	+0.7
1,186,171	-		HMPREF1058_RS14500	0.27	+2.0
1,186,200	+		HMPREF1058_RS14500	0.29	+1.9
1,186,215	+		HMPREF1058_RS14500	0.30	+0.7
1,186,249	-		HMPREF1058_RS14500	0.33	+0.8
1,186,249	-		HMPREF1058_RS14500	0.33	+0.2
1,186,269	+		HMPREF1058_RS14500	0.35	-0.5
1,186,272	+		HMPREF1058_RS14500	0.35	+1.3
1,186,273	-		HMPREF1058_RS14500	0.35	+2.0
1,186,277	+		HMPREF1058_RS14500	0.35	+0.7
1,186,278	-		HMPREF1058_RS14500	0.36	-0.9
1,186,278	-		HMPREF1058_RS14500	0.36	+1.3
1,186,297	+		HMPREF1058_RS14500	0.37	+1.1
1,186,297	+		HMPREF1058_RS14500	0.37	+2.5
1,186,338	-		HMPREF1058_RS14500	0.41	+1.0
1,186,386	+		HMPREF1058_RS14500	0.45	+1.5
1,186,468	-		HMPREF1058_RS14500	0.52	+1.7
1,186,473	-		HMPREF1058_RS14500	0.52	+1.5
1,186,512	+		HMPREF1058_RS14500	0.55	+1.3
1,186,513	-				+1.4
1,186,650	+		HMPREF1058_RS14500	0.67	+0.0
1,186,651	-		HMPREF1058_RS14500	0.67	+1.4
1,186,706	-		HMPREF1058_RS14500	0.72	+1.6
1,186,713	-		HMPREF1058_RS14500	0.72	+1.7
1,186,816	-		HMPREF1058_RS14500	0.81	+0.4
1,186,822	+		HMPREF1058_RS14500	0.81	+0.4
1,186,823	-		HMPREF1058_RS14500	0.81	+0.1
1,186,877	+		HMPREF1058_RS14500	0.86	+0.5
1,186,878	-		HMPREF1058_RS14500	0.86	+0.8
1,186,878	-		HMPREF1058_RS14500	0.86	+1.1
1,186,878	-		HMPREF1058_RS14500	0.86	+0.5
1,186,890	-		HMPREF1058_RS14500	0.87	+0.8
1,186,894	+		HMPREF1058_RS14500	0.87	+1.9
1,186,895	-		HMPREF1058_RS14500	0.87	+1.4
1,186,895	-		HMPREF1058_RS14500	0.87	+0.5
1,186,895	-		HMPREF1058_RS14500	0.87	+1.0
1,186,895	-		HMPREF1058_RS14500	0.87	+0.8
1,186,905	+		HMPREF1058_RS14500	0.88	+1.5
1,186,948	-				+1.7
1,186,950	-				+2.1
1,187,018	+				+0.7
1,187,018	+				-0.4
1,187,018	+				+1.1
1,187,018	+				+1.2
1,187,019	-				+0.9
1,187,019	-				+0.6
1,187,019	-				+1.1
1,187,023	+				+1.0
1,187,061	-				+1.0
1,187,133	-				-2.9
1,187,172	+		HMPREF1058_RS14495	0.12	+0.4
1,187,224	+		HMPREF1058_RS14495	0.18	+0.5
1,187,226	+		HMPREF1058_RS14495	0.18	-1.0
1,187,229	-		HMPREF1058_RS14495	0.18	-0.1
1,187,262	+		HMPREF1058_RS14495	0.22	+1.4
1,187,264	+		HMPREF1058_RS14495	0.22	-0.6
1,187,265	-		HMPREF1058_RS14495	0.22	-1.1
1,187,322	+		HMPREF1058_RS14495	0.28	-0.3
1,187,323	-		HMPREF1058_RS14495	0.28	-1.9
1,187,428	-		HMPREF1058_RS14495	0.40	-2.7
1,187,440	+		HMPREF1058_RS14495	0.41	+0.9
1,187,494	-		HMPREF1058_RS14495	0.47	+0.6
1,187,494	-		HMPREF1058_RS14495	0.47	-0.5
1,187,588	+		HMPREF1058_RS14495	0.57	+2.5
1,187,610	+		HMPREF1058_RS14495	0.59	+0.1
1,187,611	-		HMPREF1058_RS14495	0.60	+0.2
1,187,703	-		HMPREF1058_RS14495	0.69	+0.0
1,187,706	+		HMPREF1058_RS14495	0.70	+0.6
1,187,707	-		HMPREF1058_RS14495	0.70	+0.8
1,187,714	+		HMPREF1058_RS14495	0.71	+0.8
1,187,842	-		HMPREF1058_RS14495	0.84	-0.3
1,187,846	+		HMPREF1058_RS14495	0.85	+0.1
1,187,846	+		HMPREF1058_RS14495	0.85	+1.4
1,187,941	-				-1.1
1,187,945	-				+0.4
1,187,956	+				+1.5
1,187,966	+				+0.8
1,187,967	-				-0.6
1,187,991	+				+0.2