Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14485

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,189,457	+		HMPREF1058_RS14490	0.63	-3.2
1,189,457	+		HMPREF1058_RS14490	0.63	-3.5
1,189,587	+		HMPREF1058_RS14490	0.69	-4.7
1,189,609	-		HMPREF1058_RS14490	0.70	-2.4
1,189,609	-				+0.4
1,189,610	+		HMPREF1058_RS14490	0.70	-2.2
1,189,611	-		HMPREF1058_RS14490	0.70	-0.4
1,189,611	-		HMPREF1058_RS14490	0.70	-0.5
1,189,686	+		HMPREF1058_RS14490	0.73	-0.6
1,189,686	+		HMPREF1058_RS14490	0.73	-3.6
1,189,687	-		HMPREF1058_RS14490	0.73	-3.2
1,189,808	-		HMPREF1058_RS14490	0.79	-3.1
1,189,829	+		HMPREF1058_RS14490	0.80	-0.9
1,189,839	+		HMPREF1058_RS14490	0.80	-4.8
1,189,843	+		HMPREF1058_RS14490	0.80	-4.7
1,189,844	-		HMPREF1058_RS14490	0.80	-2.1
1,189,887	+		HMPREF1058_RS14490	0.82	-2.6
1,189,892	+		HMPREF1058_RS14490	0.83	-4.1
1,189,892	+		HMPREF1058_RS14490	0.83	-3.9
1,189,893	-		HMPREF1058_RS14490	0.83	-1.9
1,189,897	+		HMPREF1058_RS14490	0.83	+1.0
1,189,898	-		HMPREF1058_RS14490	0.83	-1.1
1,189,939	+		HMPREF1058_RS14490	0.85	-1.6
1,189,956	-		HMPREF1058_RS14490	0.86	-1.6
1,189,984	-		HMPREF1058_RS14490	0.87	-0.6
1,189,985	+		HMPREF1058_RS14490	0.87	-2.7
1,189,986	-		HMPREF1058_RS14490	0.87	-2.0
1,190,116	+				-2.1
1,190,150	-				-2.4
1,190,181	+				-3.9
1,190,181	+				-4.8
1,190,184	-				-3.6
1,190,231	-				-2.5
1,190,303	+				+0.5
1,190,354	+				-1.0
1,190,357	-				+0.7
1,190,366	-				-0.0
1,190,432	-				+0.3
1,190,432	-				+1.9
1,190,446	+				+1.1
1,190,451	+				+0.3
1,190,451	+				+0.4
1,190,467	-		HMPREF1058_RS14485	0.11	+1.6
1,190,467	-		HMPREF1058_RS14485	0.11	+0.4
1,190,473	+		HMPREF1058_RS14485	0.12	-0.3
1,190,473	+		HMPREF1058_RS14485	0.12	+0.8
1,190,474	-		HMPREF1058_RS14485	0.12	+0.5
1,190,497	+		HMPREF1058_RS14485	0.15	+2.0
1,190,497	+		HMPREF1058_RS14485	0.15	+1.3
1,190,524	+		HMPREF1058_RS14485	0.18	-0.7
1,190,525	-		HMPREF1058_RS14485	0.18	+0.0
1,190,541	+		HMPREF1058_RS14485	0.20	+0.6
1,190,542	-		HMPREF1058_RS14485	0.20	+1.4
1,190,675	-		HMPREF1058_RS14485	0.35	-1.4
1,190,942	-		HMPREF1058_RS14485	0.67	+0.7
1,191,000	+		HMPREF1058_RS14485	0.73	+0.2
1,191,042	+		HMPREF1058_RS14485	0.78	-0.4
1,191,047	-		HMPREF1058_RS14485	0.79	+1.2
1,191,047	-		HMPREF1058_RS14485	0.79	+1.3
1,191,049	+		HMPREF1058_RS14485	0.79	+1.1
1,191,063	+		HMPREF1058_RS14485	0.81	+1.4
1,191,064	-		HMPREF1058_RS14485	0.81	+0.2
1,191,099	-		HMPREF1058_RS14485	0.85	+0.6
1,191,100	+		HMPREF1058_RS14485	0.85	-0.5
1,191,100	+		HMPREF1058_RS14485	0.85	+1.0
1,191,103	+		HMPREF1058_RS14485	0.85	+0.5
1,191,128	-		HMPREF1058_RS14485	0.88	+0.5
1,191,128	-		HMPREF1058_RS14485	0.88	+0.2
1,191,209	-				-0.9
1,191,209	-				+0.2
1,191,345	+				+0.4
1,191,750	-		HMPREF1058_RS14480	0.47	-1.5
1,191,793	-		HMPREF1058_RS14480	0.51	-2.1
1,191,918	-		HMPREF1058_RS14480	0.64	-0.0
1,192,114	+		HMPREF1058_RS14480	0.84	-0.6