Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14280 and HMPREF1058_RS14275 are separated by 83 nucleotides HMPREF1058_RS14275 and HMPREF1058_RS14270 are separated by 3 nucleotides HMPREF1058_RS14270 and HMPREF1058_RS14265 are separated by 127 nucleotides
HMPREF1058_RS14280: HMPREF1058_RS14280 - thymidylate synthase, at 1,245,597 to 1,246,391
_RS14280
HMPREF1058_RS14275: HMPREF1058_RS14275 - dihydrofolate reductase, at 1,246,475 to 1,246,969
_RS14275
HMPREF1058_RS14270: HMPREF1058_RS14270 - Lrp/AsnC ligand binding domain-containing protein, at 1,246,973 to 1,247,449
_RS14270
HMPREF1058_RS14265: HMPREF1058_RS14265 - IgA Peptidase M64, at 1,247,577 to 1,248,863
_RS14265
Position (kb) 1246
1247
1248 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1246.420 kb on + strand at 1246.420 kb on + strand at 1246.474 kb on + strand at 1246.974 kb on + strand at 1246.975 kb on - strand at 1246.999 kb on + strand at 1247.033 kb on + strand, within HMPREF1058_RS14270 at 1247.033 kb on + strand, within HMPREF1058_RS14270 at 1247.036 kb on - strand, within HMPREF1058_RS14270 at 1247.039 kb on - strand, within HMPREF1058_RS14270 at 1247.085 kb on - strand, within HMPREF1058_RS14270 at 1247.115 kb on + strand, within HMPREF1058_RS14270 at 1247.136 kb on + strand, within HMPREF1058_RS14270 at 1247.163 kb on - strand, within HMPREF1058_RS14270 at 1247.227 kb on - strand, within HMPREF1058_RS14270 at 1247.227 kb on - strand, within HMPREF1058_RS14270 at 1247.236 kb on + strand, within HMPREF1058_RS14270 at 1247.238 kb on + strand, within HMPREF1058_RS14270 at 1247.238 kb on + strand, within HMPREF1058_RS14270 at 1247.239 kb on - strand, within HMPREF1058_RS14270 at 1247.239 kb on - strand, within HMPREF1058_RS14270 at 1247.280 kb on + strand, within HMPREF1058_RS14270 at 1247.281 kb on - strand, within HMPREF1058_RS14270 at 1247.281 kb on - strand, within HMPREF1058_RS14270 at 1247.660 kb on + strand at 1247.661 kb on - strand at 1247.680 kb on - strand at 1247.713 kb on + strand, within HMPREF1058_RS14265 at 1247.714 kb on - strand, within HMPREF1058_RS14265 at 1247.959 kb on + strand, within HMPREF1058_RS14265 at 1247.975 kb on - strand, within HMPREF1058_RS14265 at 1247.975 kb on - strand, within HMPREF1058_RS14265 at 1247.981 kb on + strand, within HMPREF1058_RS14265 at 1247.986 kb on + strand, within HMPREF1058_RS14265 at 1247.986 kb on + strand, within HMPREF1058_RS14265 at 1247.987 kb on - strand, within HMPREF1058_RS14265 at 1248.054 kb on - strand, within HMPREF1058_RS14265 at 1248.109 kb on + strand, within HMPREF1058_RS14265 at 1248.130 kb on - strand, within HMPREF1058_RS14265 at 1248.150 kb on - strand, within HMPREF1058_RS14265 at 1248.151 kb on + strand, within HMPREF1058_RS14265 at 1248.299 kb on + strand, within HMPREF1058_RS14265 at 1248.307 kb on + strand, within HMPREF1058_RS14265 at 1248.330 kb on + strand, within HMPREF1058_RS14265 at 1248.411 kb on - strand, within HMPREF1058_RS14265
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 1,246,420 + +1.3 1,246,420 + +0.9 1,246,474 + -0.6 1,246,974 + +2.8 1,246,975 - +2.3 1,246,999 + +3.2 1,247,033 + HMPREF1058_RS14270 0.13 +2.7 1,247,033 + HMPREF1058_RS14270 0.13 +4.1 1,247,036 - HMPREF1058_RS14270 0.13 +3.7 1,247,039 - HMPREF1058_RS14270 0.14 +4.0 1,247,085 - HMPREF1058_RS14270 0.23 +4.4 1,247,115 + HMPREF1058_RS14270 0.30 +3.6 1,247,136 + HMPREF1058_RS14270 0.34 +3.6 1,247,163 - HMPREF1058_RS14270 0.40 +4.2 1,247,227 - HMPREF1058_RS14270 0.53 +3.1 1,247,227 - HMPREF1058_RS14270 0.53 +3.9 1,247,236 + HMPREF1058_RS14270 0.55 +3.7 1,247,238 + HMPREF1058_RS14270 0.56 +3.8 1,247,238 + HMPREF1058_RS14270 0.56 +3.8 1,247,239 - HMPREF1058_RS14270 0.56 +3.6 1,247,239 - HMPREF1058_RS14270 0.56 +3.5 1,247,280 + HMPREF1058_RS14270 0.64 +3.9 1,247,281 - HMPREF1058_RS14270 0.65 +3.2 1,247,281 - HMPREF1058_RS14270 0.65 +3.7 1,247,660 + -0.2 1,247,661 - -1.9 1,247,680 - -1.5 1,247,713 + HMPREF1058_RS14265 0.11 -0.6 1,247,714 - HMPREF1058_RS14265 0.11 -0.7 1,247,959 + HMPREF1058_RS14265 0.30 +2.2 1,247,975 - HMPREF1058_RS14265 0.31 -0.7 1,247,975 - HMPREF1058_RS14265 0.31 -0.3 1,247,981 + HMPREF1058_RS14265 0.31 -0.8 1,247,986 + HMPREF1058_RS14265 0.32 +0.6 1,247,986 + HMPREF1058_RS14265 0.32 +0.0 1,247,987 - HMPREF1058_RS14265 0.32 -3.8 1,248,054 - HMPREF1058_RS14265 0.37 -0.3 1,248,109 + HMPREF1058_RS14265 0.41 -0.6 1,248,130 - HMPREF1058_RS14265 0.43 -0.8 1,248,150 - HMPREF1058_RS14265 0.45 -0.5 1,248,151 + HMPREF1058_RS14265 0.45 -2.7 1,248,299 + HMPREF1058_RS14265 0.56 -0.2 1,248,307 + HMPREF1058_RS14265 0.57 -0.6 1,248,330 + HMPREF1058_RS14265 0.59 -0.0 1,248,411 - HMPREF1058_RS14265 0.65 +0.4
Or see this region's nucleotide sequence