Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14160

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,272,343	-		HMPREF1058_RS14165	0.61	-0.7
1,272,434	+		HMPREF1058_RS14165	0.65	-0.0
1,272,435	-		HMPREF1058_RS14165	0.65	+0.2
1,272,435	-		HMPREF1058_RS14165	0.65	+1.4
1,272,466	-		HMPREF1058_RS14165	0.66	+1.1
1,272,516	+				-1.0
1,272,552	+		HMPREF1058_RS14165	0.70	-0.3
1,272,553	-		HMPREF1058_RS14165	0.70	+0.2
1,272,624	-		HMPREF1058_RS14165	0.73	-0.5
1,272,663	+		HMPREF1058_RS14165	0.75	+0.7
1,272,743	+		HMPREF1058_RS14165	0.78	-0.2
1,272,748	+		HMPREF1058_RS14165	0.78	+0.6
1,272,837	+		HMPREF1058_RS14165	0.82	-0.3
1,272,838	-		HMPREF1058_RS14165	0.82	+1.0
1,272,880	+		HMPREF1058_RS14165	0.84	+0.2
1,272,968	+		HMPREF1058_RS14165	0.88	-1.2
1,272,987	-		HMPREF1058_RS14165	0.89	-0.3
1,272,999	+		HMPREF1058_RS14165	0.89	-1.3
1,273,013	+		HMPREF1058_RS14165	0.90	-0.4
1,273,015	+		HMPREF1058_RS14165	0.90	-1.3
1,273,017	+		HMPREF1058_RS14165	0.90	-1.5
1,273,018	-		HMPREF1058_RS14165	0.90	+1.5
1,273,022	+				+0.2
1,273,045	+				-1.1
1,273,091	-				-2.4
1,273,091	-				+0.2
1,273,123	-				-0.3
1,273,123	-				+0.7
1,273,156	+				-0.7
1,273,202	+				-0.2
1,273,203	-				-0.2
1,273,213	+				+0.3
1,273,219	+				-1.6
1,273,219	+				-0.0
1,273,223	+				-0.1
1,273,248	-				-0.9
1,273,270	+				-1.0
1,273,270	+				-0.1
1,273,270	+				-0.5
1,273,317	+				+0.5
1,273,331	+				+0.4
1,273,332	-				-0.5
1,273,338	+				+0.5
1,273,372	+		HMPREF1058_RS14160	0.18	+1.4
1,273,373	-		HMPREF1058_RS14160	0.19	-0.2
1,273,381	-				-1.7
1,273,383	+		HMPREF1058_RS14160	0.22	-0.0
1,273,410	+		HMPREF1058_RS14160	0.31	+1.5
1,273,414	-		HMPREF1058_RS14160	0.32	+1.7
1,273,598	+				+0.2
1,273,601	+				+3.4
1,273,602	-				-0.3
1,273,606	-				-0.6
1,273,606	-				-0.4
1,273,653	+				-0.3
1,273,660	+				+0.6
1,273,661	-				+1.7
1,273,687	+		HMPREF1058_RS14155	0.17	+0.2
1,273,690	+		HMPREF1058_RS14155	0.18	-0.4
1,273,723	+		HMPREF1058_RS14155	0.28	+0.1
1,273,726	+		HMPREF1058_RS14155	0.29	-2.0
1,273,726	+		HMPREF1058_RS14155	0.29	-0.2
1,273,776	-		HMPREF1058_RS14155	0.45	-0.7
1,273,812	+		HMPREF1058_RS14155	0.56	+0.4
1,273,812	+		HMPREF1058_RS14155	0.56	+0.2
1,273,837	-		HMPREF1058_RS14155	0.64	+1.4
1,273,838	+		HMPREF1058_RS14155	0.64	+1.1
1,273,893	-		HMPREF1058_RS14155	0.81	+0.6
1,273,930	+				-0.6
1,273,964	+				-0.8
1,274,187	+				+1.4
1,274,187	+				-0.0
1,274,245	+				-0.1
1,274,245	+				-0.6
1,274,282	-		HMPREF1058_RS14150	0.11	+0.0
1,274,312	+		HMPREF1058_RS14150	0.13	+1.4
1,274,392	+		HMPREF1058_RS14150	0.18	-0.0
1,274,594	+		HMPREF1058_RS14150	0.29	-0.8
1,274,594	+		HMPREF1058_RS14150	0.29	-1.6
1,274,594	+		HMPREF1058_RS14150	0.29	-0.5
1,274,595	-		HMPREF1058_RS14150	0.29	+1.4
1,274,595	-		HMPREF1058_RS14150	0.29	-0.3
1,274,601	-		HMPREF1058_RS14150	0.30	-0.7