Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14085

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,289,988	-				-1.6
1,290,067	-		HMPREF1058_RS14085	0.11	+0.1
1,290,067	-		HMPREF1058_RS14085	0.11	+0.2
1,290,314	-		HMPREF1058_RS14085	0.43	+0.2
1,290,314	-		HMPREF1058_RS14085	0.43	+0.1
1,290,314	-		HMPREF1058_RS14085	0.43	+0.5
1,290,314	-		HMPREF1058_RS14085	0.43	-1.8
1,290,316	-		HMPREF1058_RS14085	0.43	+0.4
1,290,360	-		HMPREF1058_RS14085	0.49	+1.0
1,290,548	-		HMPREF1058_RS14085	0.73	+0.2
1,290,548	-		HMPREF1058_RS14085	0.73	+0.4
1,290,548	-		HMPREF1058_RS14085	0.73	+0.3
1,290,548	-		HMPREF1058_RS14085	0.73	+1.4
1,290,550	-		HMPREF1058_RS14085	0.73	+0.9
1,290,837	+				+0.1
1,290,858	+				-0.1
1,290,963	+				-1.5
1,290,977	+				+0.6
1,290,977	+				-0.6
1,290,979	+				-0.0
1,290,980	+				+0.3
1,290,980	+				+0.7
1,291,509	+		HMPREF1058_RS14080	0.64	-2.3
1,291,650	+		HMPREF1058_RS14080	0.83	-0.1