Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14000

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,310,516	-		HMPREF1058_RS14005	0.32	+0.4
1,310,521	+		HMPREF1058_RS14005	0.32	+2.0
1,310,677	-		HMPREF1058_RS14005	0.47	+0.4
1,310,766	+		HMPREF1058_RS14005	0.55	-0.6
1,310,771	+		HMPREF1058_RS14005	0.56	-1.2
1,310,822	-		HMPREF1058_RS14005	0.61	+1.0
1,310,822	-		HMPREF1058_RS14005	0.61	+2.0
1,310,931	+		HMPREF1058_RS14005	0.71	+2.0
1,310,932	-		HMPREF1058_RS14005	0.71	-1.5
1,311,012	+		HMPREF1058_RS14005	0.79	-0.0
1,311,012	+		HMPREF1058_RS14005	0.79	+0.4
1,311,144	+				-0.0
1,311,268	-				-0.5
1,311,307	+				+0.0
1,311,496	+				-0.4
1,311,509	+				+0.8
1,311,518	+				+0.7
1,311,519	-				+1.9
1,311,548	-				+0.9
1,311,550	-				+1.0
1,311,578	-				+1.3
1,311,615	-		HMPREF1058_RS14000	0.12	+0.0
1,311,616	+		HMPREF1058_RS14000	0.12	+0.6
1,311,623	-		HMPREF1058_RS14000	0.13	+0.6
1,311,624	+		HMPREF1058_RS14000	0.13	+2.0
1,311,625	-		HMPREF1058_RS14000	0.13	+0.0
1,311,625	-		HMPREF1058_RS14000	0.13	+0.8
1,311,625	-		HMPREF1058_RS14000	0.13	+0.0
1,311,631	+		HMPREF1058_RS14000	0.14	+1.1
1,311,643	+		HMPREF1058_RS14000	0.15	+1.3
1,311,645	+		HMPREF1058_RS14000	0.15	+1.2
1,311,646	-		HMPREF1058_RS14000	0.16	+0.7
1,311,646	-		HMPREF1058_RS14000	0.16	+2.0
1,311,658	+				+1.7
1,311,664	-		HMPREF1058_RS14000	0.18	+0.0
1,311,684	-		HMPREF1058_RS14000	0.20	+1.6
1,311,685	+		HMPREF1058_RS14000	0.20	+0.1
1,311,686	-		HMPREF1058_RS14000	0.20	+1.1
1,311,689	-		HMPREF1058_RS14000	0.21	+1.1
1,311,690	+		HMPREF1058_RS14000	0.21	+1.5
1,311,690	+		HMPREF1058_RS14000	0.21	+1.7
1,311,691	-		HMPREF1058_RS14000	0.21	+0.3
1,311,798	-		HMPREF1058_RS14000	0.33	+0.4
1,311,804	+		HMPREF1058_RS14000	0.34	+0.0
1,311,894	-		HMPREF1058_RS14000	0.44	+0.9
1,311,905	+		HMPREF1058_RS14000	0.46	+0.9
1,311,906	-		HMPREF1058_RS14000	0.46	+0.9
1,311,906	-		HMPREF1058_RS14000	0.46	-0.6
1,311,915	+		HMPREF1058_RS14000	0.47	+1.7
1,311,966	+		HMPREF1058_RS14000	0.53	+0.3
1,311,966	+		HMPREF1058_RS14000	0.53	+1.9
1,311,967	-		HMPREF1058_RS14000	0.53	+0.8
1,311,967	-		HMPREF1058_RS14000	0.53	+2.3
1,311,982	+		HMPREF1058_RS14000	0.55	+1.0
1,311,984	+		HMPREF1058_RS14000	0.55	+1.1
1,311,996	+		HMPREF1058_RS14000	0.56	+1.1
1,311,996	+		HMPREF1058_RS14000	0.56	+2.6
1,311,997	-		HMPREF1058_RS14000	0.56	+0.7
1,312,016	+		HMPREF1058_RS14000	0.59	+0.7
1,312,027	+		HMPREF1058_RS14000	0.60	+1.3
1,312,028	-		HMPREF1058_RS14000	0.60	+1.2
1,312,036	+		HMPREF1058_RS14000	0.61	+1.2
1,312,077	-		HMPREF1058_RS14000	0.66	+0.7
1,312,098	-		HMPREF1058_RS14000	0.68	+1.2
1,312,108	+		HMPREF1058_RS14000	0.69	+0.3
1,312,154	+		HMPREF1058_RS14000	0.75	+0.8
1,312,155	-		HMPREF1058_RS14000	0.75	+0.4
1,312,167	+		HMPREF1058_RS14000	0.76	+0.8
1,312,230	+		HMPREF1058_RS14000	0.83	+0.7
1,312,272	+		HMPREF1058_RS14000	0.88	+0.9
1,312,308	+				-0.1
1,312,336	+				+0.9
1,312,337	-				+0.8
1,312,370	+				+0.5
1,312,383	-				+0.3
1,312,569	+				-0.2
1,312,594	-				+0.1
1,312,598	+				+0.4
1,312,673	+				+1.7
1,312,689	+				+0.2
1,312,690	-				-0.5
1,312,736	+				-1.0
1,312,746	-				-0.4
1,312,746	-				-0.1
1,312,746	-				-2.0
1,312,831	+				-0.4
1,312,831	+				-1.2
1,312,832	-				-0.7
1,312,835	+				-0.2
1,312,854	+				+0.5
1,312,937	-		HMPREF1058_RS13990	0.11	+0.9
1,312,972	+		HMPREF1058_RS13990	0.15	-0.5
1,312,973	-		HMPREF1058_RS13990	0.15	+0.2
1,313,047	+		HMPREF1058_RS13990	0.21	+0.3
1,313,050	-		HMPREF1058_RS13990	0.22	+0.5
1,313,051	+		HMPREF1058_RS13990	0.22	-0.5
1,313,051	+		HMPREF1058_RS13990	0.22	-1.0
1,313,052	-		HMPREF1058_RS13990	0.22	-0.7
1,313,079	-		HMPREF1058_RS13990	0.24	+1.7
1,313,087	+		HMPREF1058_RS13990	0.25	+0.3
1,313,087	+		HMPREF1058_RS13990	0.25	-0.7
1,313,091	+		HMPREF1058_RS13990	0.25	-0.8
1,313,091	+		HMPREF1058_RS13990	0.25	-0.3
1,313,092	-		HMPREF1058_RS13990	0.26	+0.9
1,313,099	+		HMPREF1058_RS13990	0.26	+0.2
1,313,099	+		HMPREF1058_RS13990	0.26	+0.5
1,313,104	+		HMPREF1058_RS13990	0.27	-1.7
1,313,141	-		HMPREF1058_RS13990	0.30	-0.9
1,313,172	-		HMPREF1058_RS13990	0.33	+0.2
1,313,173	+		HMPREF1058_RS13990	0.33	-0.5
1,313,173	+		HMPREF1058_RS13990	0.33	+1.2
1,313,174	-		HMPREF1058_RS13990	0.33	-0.8
1,313,174	-		HMPREF1058_RS13990	0.33	-0.3
1,313,174	-		HMPREF1058_RS13990	0.33	+0.6
1,313,174	-		HMPREF1058_RS13990	0.33	+0.2
1,313,178	-		HMPREF1058_RS13990	0.33	+0.7
1,313,192	-		HMPREF1058_RS13990	0.35	+0.3
1,313,225	-		HMPREF1058_RS13990	0.38	-0.0
1,313,300	+		HMPREF1058_RS13990	0.45	-0.2
1,313,305	+		HMPREF1058_RS13990	0.45	-0.2
1,313,305	+		HMPREF1058_RS13990	0.45	-0.2
1,313,305	+		HMPREF1058_RS13990	0.45	-2.0
1,313,305	+				+0.4
1,313,305	+		HMPREF1058_RS13990	0.45	-0.4
1,313,306	-		HMPREF1058_RS13990	0.45	+1.1
1,313,306	-		HMPREF1058_RS13990	0.45	-0.1
1,313,365	+		HMPREF1058_RS13990	0.51	+0.0
1,313,366	-		HMPREF1058_RS13990	0.51	+1.3
1,313,366	-		HMPREF1058_RS13990	0.51	-0.6