Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13785

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,362,700	+		HMPREF1058_RS13790	0.28	-2.3
1,362,701	-		HMPREF1058_RS13790	0.28	-0.6
1,362,779	+		HMPREF1058_RS13790	0.34	-1.0
1,362,937	+		HMPREF1058_RS13790	0.47	+2.0
1,362,960	-		HMPREF1058_RS13790	0.48	-1.1
1,362,965	-		HMPREF1058_RS13790	0.49	-1.3
1,363,000	+		HMPREF1058_RS13790	0.52	-3.7
1,363,037	-		HMPREF1058_RS13790	0.55	-1.2
1,363,037	-		HMPREF1058_RS13790	0.55	-1.7
1,363,037	-		HMPREF1058_RS13790	0.55	-0.9
1,363,092	-		HMPREF1058_RS13790	0.59	-1.9
1,363,181	-		HMPREF1058_RS13790	0.66	-1.1
1,363,181	-		HMPREF1058_RS13790	0.66	-0.4
1,363,182	+		HMPREF1058_RS13790	0.66	-2.5
1,363,186	+		HMPREF1058_RS13790	0.66	-3.6
1,363,186	+		HMPREF1058_RS13790	0.66	-1.4
1,363,186	+		HMPREF1058_RS13790	0.66	-1.0
1,363,187	-		HMPREF1058_RS13790	0.67	-1.5
1,363,187	-		HMPREF1058_RS13790	0.67	-0.3
1,363,187	-		HMPREF1058_RS13790	0.67	-1.4
1,363,264	+		HMPREF1058_RS13790	0.73	-4.3
1,363,265	-		HMPREF1058_RS13790	0.73	-2.3
1,363,298	+		HMPREF1058_RS13790	0.75	-2.5
1,363,299	-		HMPREF1058_RS13790	0.75	-0.5
1,363,303	+		HMPREF1058_RS13790	0.76	-3.3
1,363,304	-		HMPREF1058_RS13790	0.76	-0.5
1,363,308	-		HMPREF1058_RS13790	0.76	-1.0
1,363,382	-		HMPREF1058_RS13790	0.82	-1.1
1,363,382	-		HMPREF1058_RS13790	0.82	-1.7
1,363,382	-		HMPREF1058_RS13790	0.82	-1.7
1,363,382	-		HMPREF1058_RS13790	0.82	-1.3
1,363,383	+		HMPREF1058_RS13790	0.82	-0.0
1,363,384	-		HMPREF1058_RS13790	0.82	-1.9
1,363,384	-		HMPREF1058_RS13790	0.82	-1.1
1,363,559	+				-0.0
1,363,640	-				+0.1
1,363,692	+				+0.3
1,363,692	+				+0.5
1,363,692	+				-0.0
1,363,692	+				+0.2
1,363,700	-				-0.6
1,363,701	+				-1.4
1,363,730	+				+0.6
1,363,814	+				+2.2
1,363,814	+				+0.9
1,363,814	+				+1.0
1,363,815	-				-1.0
1,363,816	+				-0.2
1,363,821	+				+0.9
1,363,822	-				+1.4
1,363,834	+				+0.3
1,363,834	+				+0.7
1,363,872	+		HMPREF1058_RS13785	0.11	+0.9
1,363,964	+		HMPREF1058_RS13785	0.17	+1.3
1,363,964	+		HMPREF1058_RS13785	0.17	+1.1
1,364,062	-		HMPREF1058_RS13785	0.23	+0.8
1,364,069	-		HMPREF1058_RS13785	0.23	+0.7
1,364,124	+		HMPREF1058_RS13785	0.27	+1.4
1,364,154	+		HMPREF1058_RS13785	0.29	+0.1
1,364,154	+		HMPREF1058_RS13785	0.29	+0.5
1,364,154	+		HMPREF1058_RS13785	0.29	+1.2
1,364,155	-		HMPREF1058_RS13785	0.29	+0.6
1,364,177	-		HMPREF1058_RS13785	0.30	+0.9
1,364,210	+		HMPREF1058_RS13785	0.32	+1.4
1,364,277	+		HMPREF1058_RS13785	0.36	+2.6
1,364,285	-		HMPREF1058_RS13785	0.37	+0.9
1,364,286	+		HMPREF1058_RS13785	0.37	+0.3
1,364,306	+		HMPREF1058_RS13785	0.38	+0.7
1,364,306	+		HMPREF1058_RS13785	0.38	+1.5
1,364,309	-		HMPREF1058_RS13785	0.39	+1.1
1,364,330	+		HMPREF1058_RS13785	0.40	+0.8
1,364,332	+		HMPREF1058_RS13785	0.40	+1.6
1,364,457	-		HMPREF1058_RS13785	0.48	+0.8
1,364,463	-		HMPREF1058_RS13785	0.48	+1.5
1,364,578	-		HMPREF1058_RS13785	0.55	+0.7
1,364,668	+		HMPREF1058_RS13785	0.61	-1.0
1,364,668	+		HMPREF1058_RS13785	0.61	+0.9
1,364,669	-		HMPREF1058_RS13785	0.61	-0.4
1,364,669	-		HMPREF1058_RS13785	0.61	+1.5
1,364,679	+		HMPREF1058_RS13785	0.62	+1.2
1,364,705	+		HMPREF1058_RS13785	0.63	+1.2
1,364,736	-		HMPREF1058_RS13785	0.65	+0.2
1,364,736	-		HMPREF1058_RS13785	0.65	+1.4
1,364,740	-		HMPREF1058_RS13785	0.66	+1.2
1,364,772	-		HMPREF1058_RS13785	0.68	+0.7
1,364,820	+		HMPREF1058_RS13785	0.71	+1.6
1,364,910	-		HMPREF1058_RS13785	0.76	+0.2
1,364,911	+		HMPREF1058_RS13785	0.76	+1.6
1,364,911	+		HMPREF1058_RS13785	0.76	+1.1
1,364,911	+		HMPREF1058_RS13785	0.76	+2.0
1,364,911	+		HMPREF1058_RS13785	0.76	+1.9
1,364,912	-		HMPREF1058_RS13785	0.76	+0.9
1,364,912	-		HMPREF1058_RS13785	0.76	+1.2
1,364,912	-		HMPREF1058_RS13785	0.76	+1.5
1,364,952	+		HMPREF1058_RS13785	0.79	+1.3
1,364,978	+		HMPREF1058_RS13785	0.81	+1.1
1,364,978	+		HMPREF1058_RS13785	0.81	+1.4
1,364,991	-		HMPREF1058_RS13785	0.81	+0.3
1,364,993	-		HMPREF1058_RS13785	0.82	+3.4
1,365,041	+		HMPREF1058_RS13785	0.85	+1.6
1,365,074	-		HMPREF1058_RS13785	0.87	+0.9
1,365,078	-		HMPREF1058_RS13785	0.87	+0.4
1,365,107	+		HMPREF1058_RS13785	0.89	+0.7
1,365,168	+				+1.7
1,365,169	-				+0.0
1,365,169	-				+0.5
1,365,170	+				+2.1
1,365,192	+				+0.9
1,365,196	+				+1.5
1,365,197	-				+2.1
1,365,197	-				+1.7
1,365,266	-				+1.0
1,365,269	+				+2.2
1,365,270	-				+1.6
1,365,284	+				+1.2
1,365,305	-				+0.7
1,365,323	+				+1.1
1,365,325	+				+2.1
1,365,326	-				+0.9
1,365,347	-				+0.2
1,365,355	-				+1.5
1,365,356	+				+0.2
1,365,356	+				+1.1
1,365,356	+				+1.1
1,365,357	-				+0.7
1,365,357	-				+0.8
1,365,375	+				+0.8
1,365,376	-				-0.6
1,365,467	-				+0.8
1,365,532	+				+2.1
1,365,532	+				+1.8
1,365,562	+				+1.9
1,365,563	-				+0.8
1,365,574	+				+1.6
1,365,626	+		HMPREF1058_RS13780	0.11	+0.7
1,365,632	-		HMPREF1058_RS13780	0.11	+0.1
1,365,685	+		HMPREF1058_RS13780	0.12	+1.5
1,365,685	+		HMPREF1058_RS13780	0.12	+0.9
1,365,685	+		HMPREF1058_RS13780	0.12	+1.2
1,365,685	+		HMPREF1058_RS13780	0.12	+1.2
1,365,686	-		HMPREF1058_RS13780	0.13	-1.5
1,365,686	-		HMPREF1058_RS13780	0.13	+0.7
1,365,697	+		HMPREF1058_RS13780	0.13	+1.0
1,365,775	-		HMPREF1058_RS13780	0.15	+0.6
1,365,785	+		HMPREF1058_RS13780	0.16	+1.8
1,365,786	-		HMPREF1058_RS13780	0.16	+2.2
1,365,786	-		HMPREF1058_RS13780	0.16	+1.7
1,365,844	+		HMPREF1058_RS13780	0.18	+1.2
1,365,912	+		HMPREF1058_RS13780	0.20	+1.8
1,365,913	-		HMPREF1058_RS13780	0.20	+0.6
1,365,913	-		HMPREF1058_RS13780	0.20	+1.0
1,365,913	-		HMPREF1058_RS13780	0.20	+1.1
1,365,921	-		HMPREF1058_RS13780	0.20	+2.0
1,365,934	-		HMPREF1058_RS13780	0.21	+1.4
1,365,938	-		HMPREF1058_RS13780	0.21	+1.4
1,365,938	-		HMPREF1058_RS13780	0.21	+0.8
1,366,080	+		HMPREF1058_RS13780	0.26	+1.7
1,366,080	+		HMPREF1058_RS13780	0.26	+0.6
1,366,200	+		HMPREF1058_RS13780	0.30	+0.7
1,366,218	-		HMPREF1058_RS13780	0.30	+0.7
1,366,222	+		HMPREF1058_RS13780	0.30	+1.2
1,366,222	+		HMPREF1058_RS13780	0.30	+1.4