Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13780

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,364,309	-		HMPREF1058_RS13785	0.39	+1.1
1,364,330	+		HMPREF1058_RS13785	0.40	+0.8
1,364,332	+		HMPREF1058_RS13785	0.40	+1.6
1,364,457	-		HMPREF1058_RS13785	0.48	+0.8
1,364,463	-		HMPREF1058_RS13785	0.48	+1.5
1,364,578	-		HMPREF1058_RS13785	0.55	+0.7
1,364,668	+		HMPREF1058_RS13785	0.61	-1.0
1,364,668	+		HMPREF1058_RS13785	0.61	+0.9
1,364,669	-		HMPREF1058_RS13785	0.61	-0.4
1,364,669	-		HMPREF1058_RS13785	0.61	+1.5
1,364,679	+		HMPREF1058_RS13785	0.62	+1.2
1,364,705	+		HMPREF1058_RS13785	0.63	+1.2
1,364,736	-		HMPREF1058_RS13785	0.65	+0.2
1,364,736	-		HMPREF1058_RS13785	0.65	+1.4
1,364,740	-		HMPREF1058_RS13785	0.66	+1.2
1,364,772	-		HMPREF1058_RS13785	0.68	+0.7
1,364,820	+		HMPREF1058_RS13785	0.71	+1.6
1,364,910	-		HMPREF1058_RS13785	0.76	+0.2
1,364,911	+		HMPREF1058_RS13785	0.76	+1.6
1,364,911	+		HMPREF1058_RS13785	0.76	+1.1
1,364,911	+		HMPREF1058_RS13785	0.76	+2.0
1,364,911	+		HMPREF1058_RS13785	0.76	+1.9
1,364,912	-		HMPREF1058_RS13785	0.76	+0.9
1,364,912	-		HMPREF1058_RS13785	0.76	+1.2
1,364,912	-		HMPREF1058_RS13785	0.76	+1.5
1,364,952	+		HMPREF1058_RS13785	0.79	+1.3
1,364,978	+		HMPREF1058_RS13785	0.81	+1.1
1,364,978	+		HMPREF1058_RS13785	0.81	+1.4
1,364,991	-		HMPREF1058_RS13785	0.81	+0.3
1,364,993	-		HMPREF1058_RS13785	0.82	+3.4
1,365,041	+		HMPREF1058_RS13785	0.85	+1.6
1,365,074	-		HMPREF1058_RS13785	0.87	+0.9
1,365,078	-		HMPREF1058_RS13785	0.87	+0.4
1,365,107	+		HMPREF1058_RS13785	0.89	+0.7
1,365,168	+				+1.7
1,365,169	-				+0.0
1,365,169	-				+0.5
1,365,170	+				+2.1
1,365,192	+				+0.9
1,365,196	+				+1.5
1,365,197	-				+2.1
1,365,197	-				+1.7
1,365,266	-				+1.0
1,365,269	+				+2.2
1,365,270	-				+1.6
1,365,284	+				+1.2
1,365,305	-				+0.7
1,365,323	+				+1.1
1,365,325	+				+2.1
1,365,326	-				+0.9
1,365,347	-				+0.2
1,365,355	-				+1.5
1,365,356	+				+0.2
1,365,356	+				+1.1
1,365,356	+				+1.1
1,365,357	-				+0.7
1,365,357	-				+0.8
1,365,375	+				+0.8
1,365,376	-				-0.6
1,365,467	-				+0.8
1,365,532	+				+2.1
1,365,532	+				+1.8
1,365,562	+				+1.9
1,365,563	-				+0.8
1,365,574	+				+1.6
1,365,626	+		HMPREF1058_RS13780	0.11	+0.7
1,365,632	-		HMPREF1058_RS13780	0.11	+0.1
1,365,685	+		HMPREF1058_RS13780	0.12	+1.5
1,365,685	+		HMPREF1058_RS13780	0.12	+0.9
1,365,685	+		HMPREF1058_RS13780	0.12	+1.2
1,365,685	+		HMPREF1058_RS13780	0.12	+1.2
1,365,686	-		HMPREF1058_RS13780	0.13	-1.5
1,365,686	-		HMPREF1058_RS13780	0.13	+0.7
1,365,697	+		HMPREF1058_RS13780	0.13	+1.0
1,365,775	-		HMPREF1058_RS13780	0.15	+0.6
1,365,785	+		HMPREF1058_RS13780	0.16	+1.8
1,365,786	-		HMPREF1058_RS13780	0.16	+2.2
1,365,786	-		HMPREF1058_RS13780	0.16	+1.7
1,365,844	+		HMPREF1058_RS13780	0.18	+1.2
1,365,912	+		HMPREF1058_RS13780	0.20	+1.8
1,365,913	-		HMPREF1058_RS13780	0.20	+0.6
1,365,913	-		HMPREF1058_RS13780	0.20	+1.0
1,365,913	-		HMPREF1058_RS13780	0.20	+1.1
1,365,921	-		HMPREF1058_RS13780	0.20	+2.0
1,365,934	-		HMPREF1058_RS13780	0.21	+1.4
1,365,938	-		HMPREF1058_RS13780	0.21	+1.4
1,365,938	-		HMPREF1058_RS13780	0.21	+0.8
1,366,080	+		HMPREF1058_RS13780	0.26	+1.7
1,366,080	+		HMPREF1058_RS13780	0.26	+0.6
1,366,200	+		HMPREF1058_RS13780	0.30	+0.7
1,366,218	-		HMPREF1058_RS13780	0.30	+0.7
1,366,222	+		HMPREF1058_RS13780	0.30	+1.2
1,366,222	+		HMPREF1058_RS13780	0.30	+1.4
1,366,298	-		HMPREF1058_RS13780	0.33	+0.4
1,366,298	-		HMPREF1058_RS13780	0.33	+1.6
1,366,299	+		HMPREF1058_RS13780	0.33	+0.4
1,366,299	+		HMPREF1058_RS13780	0.33	+1.2
1,366,299	+		HMPREF1058_RS13780	0.33	+1.1
1,366,300	-		HMPREF1058_RS13780	0.33	+0.2
1,366,300	-		HMPREF1058_RS13780	0.33	+1.2
1,366,301	-		HMPREF1058_RS13780	0.33	+0.9
1,366,305	-		HMPREF1058_RS13780	0.33	+0.7
1,366,327	+		HMPREF1058_RS13780	0.34	+2.0
1,366,342	+		HMPREF1058_RS13780	0.34	+1.5
1,366,342	+		HMPREF1058_RS13780	0.34	+0.4
1,366,342	+		HMPREF1058_RS13780	0.34	+1.3
1,366,343	-		HMPREF1058_RS13780	0.34	-0.6
1,366,343	-		HMPREF1058_RS13780	0.34	+1.7
1,366,365	+		HMPREF1058_RS13780	0.35	+0.8
1,366,365	+		HMPREF1058_RS13780	0.35	+1.7
1,366,365	+		HMPREF1058_RS13780	0.35	+1.6
1,366,366	-		HMPREF1058_RS13780	0.35	-0.4
1,366,419	+		HMPREF1058_RS13780	0.37	+2.0
1,366,481	+		HMPREF1058_RS13780	0.39	+0.6
1,366,481	+		HMPREF1058_RS13780	0.39	+1.2
1,366,482	-		HMPREF1058_RS13780	0.39	+1.2
1,366,484	+		HMPREF1058_RS13780	0.39	+2.0
1,366,596	+		HMPREF1058_RS13780	0.43	-0.9
1,366,630	-		HMPREF1058_RS13780	0.44	+0.5
1,366,648	+		HMPREF1058_RS13780	0.44	+1.2
1,366,667	-		HMPREF1058_RS13780	0.45	+3.0
1,366,676	+		HMPREF1058_RS13780	0.45	+0.5
1,366,735	+		HMPREF1058_RS13780	0.47	+1.2
1,366,774	+		HMPREF1058_RS13780	0.49	+1.6
1,366,787	-		HMPREF1058_RS13780	0.49	-1.4
1,366,787	-		HMPREF1058_RS13780	0.49	+1.2
1,366,800	+		HMPREF1058_RS13780	0.49	+1.7
1,366,801	-		HMPREF1058_RS13780	0.49	+0.5
1,366,824	-		HMPREF1058_RS13780	0.50	+1.7
1,366,843	+		HMPREF1058_RS13780	0.51	+0.2
1,366,844	-		HMPREF1058_RS13780	0.51	+1.6
1,366,847	+		HMPREF1058_RS13780	0.51	+0.9
1,366,848	-		HMPREF1058_RS13780	0.51	+0.2
1,366,848	-		HMPREF1058_RS13780	0.51	+1.7
1,366,885	-		HMPREF1058_RS13780	0.52	+2.0
1,366,928	-		HMPREF1058_RS13780	0.54	+0.8
1,366,928	-		HMPREF1058_RS13780	0.54	+1.1
1,366,931	+		HMPREF1058_RS13780	0.54	+0.8
1,367,020	-		HMPREF1058_RS13780	0.57	+1.6
1,367,039	-		HMPREF1058_RS13780	0.57	+0.7
1,367,040	+		HMPREF1058_RS13780	0.57	+1.1
1,367,041	-		HMPREF1058_RS13780	0.57	-0.5
1,367,062	+		HMPREF1058_RS13780	0.58	+1.1
1,367,169	+		HMPREF1058_RS13780	0.62	+1.8
1,367,169	+		HMPREF1058_RS13780	0.62	+1.1
1,367,169	+		HMPREF1058_RS13780	0.62	+3.0
1,367,170	-		HMPREF1058_RS13780	0.62	+0.7
1,367,173	+		HMPREF1058_RS13780	0.62	+1.7
1,367,174	-		HMPREF1058_RS13780	0.62	+0.1
1,367,174	-		HMPREF1058_RS13780	0.62	+0.8
1,367,266	+		HMPREF1058_RS13780	0.65	+2.2
1,367,354	-		HMPREF1058_RS13780	0.68	-0.0
1,367,392	+		HMPREF1058_RS13780	0.69	+1.0
1,367,393	-		HMPREF1058_RS13780	0.69	+1.2
1,367,398	-		HMPREF1058_RS13780	0.69	-0.1
1,367,398	-		HMPREF1058_RS13780	0.69	+0.6
1,367,429	+		HMPREF1058_RS13780	0.70	+1.0
1,367,434	+		HMPREF1058_RS13780	0.70	+1.8
1,367,434	+		HMPREF1058_RS13780	0.70	+0.4
1,367,489	-		HMPREF1058_RS13780	0.72	+0.6
1,367,496	+		HMPREF1058_RS13780	0.72	-0.7
1,367,497	-		HMPREF1058_RS13780	0.73	+0.7
1,367,501	-		HMPREF1058_RS13780	0.73	+0.9
1,367,516	+		HMPREF1058_RS13780	0.73	+0.1
1,367,517	-		HMPREF1058_RS13780	0.73	+1.6
1,367,527	+		HMPREF1058_RS13780	0.74	+1.0
1,367,602	+		HMPREF1058_RS13780	0.76	+0.2
1,367,602	+		HMPREF1058_RS13780	0.76	+0.2
1,367,602	+		HMPREF1058_RS13780	0.76	+1.8
1,367,636	-		HMPREF1058_RS13780	0.77	+0.7
1,367,685	+		HMPREF1058_RS13780	0.79	+0.4
1,367,690	-		HMPREF1058_RS13780	0.79	+0.6
1,367,740	-		HMPREF1058_RS13780	0.81	-0.5
1,367,806	+		HMPREF1058_RS13780	0.83	+0.8
1,367,807	-		HMPREF1058_RS13780	0.83	+0.6
1,367,807	-		HMPREF1058_RS13780	0.83	+0.5
1,367,832	-		HMPREF1058_RS13780	0.84	+0.5
1,367,832	-		HMPREF1058_RS13780	0.84	+1.6
1,367,911	+		HMPREF1058_RS13780	0.86	+1.8
1,367,952	-		HMPREF1058_RS13780	0.88	+0.7
1,367,958	+		HMPREF1058_RS13780	0.88	+2.1
1,367,958	+		HMPREF1058_RS13780	0.88	+1.2
1,367,959	-		HMPREF1058_RS13780	0.88	+1.7
1,367,983	+		HMPREF1058_RS13780	0.89	+0.7
1,367,983	+		HMPREF1058_RS13780	0.89	+1.3
1,368,038	-				+1.0
1,368,038	-				+1.0
1,368,043	+				+1.7
1,368,043	+				+2.7
1,368,044	-				-2.3
1,368,122	+				-0.0
1,368,125	-				-0.1
1,368,143	-				+1.5
1,368,220	+				+0.2
1,368,301	-				+0.7
1,368,349	+				-0.1
1,368,349	+				+0.3
1,368,350	-				-0.3
1,368,369	+				-0.0
1,368,375	-				-1.1
1,368,393	+				+0.1
1,368,397	+				-0.0
1,368,427	+				-0.3
1,368,449	+				+0.6
1,368,450	-				-0.9
1,368,454	-				+0.5
1,368,469	-				-0.4
1,368,472	-				-1.0
1,368,477	-				+1.7
1,368,494	+				-0.2
1,368,501	-				+0.4
1,368,506	+				+0.3
1,368,506	+				+0.7
1,368,507	-				-0.2
1,368,546	-				-0.2
1,368,726	-		HMPREF1058_RS13775	0.14	-0.9
1,368,824	-		HMPREF1058_RS13775	0.21	-1.4
1,368,824	-				-1.0
1,368,825	+		HMPREF1058_RS13775	0.21	-0.2
1,368,825	+		HMPREF1058_RS13775	0.21	-1.1
1,368,826	-		HMPREF1058_RS13775	0.21	+1.4
1,368,827	+		HMPREF1058_RS13775	0.21	-0.8
1,368,827	+		HMPREF1058_RS13775	0.21	+0.0
1,368,827	+		HMPREF1058_RS13775	0.21	+2.3
1,368,827	+		HMPREF1058_RS13775	0.21	+0.1
1,368,875	-		HMPREF1058_RS13775	0.24	+0.3
1,368,877	-		HMPREF1058_RS13775	0.25	-0.0
1,368,929	+		HMPREF1058_RS13775	0.28	+1.2
1,368,929	+		HMPREF1058_RS13775	0.28	+1.3
1,368,931	+		HMPREF1058_RS13775	0.28	+0.8
1,368,955	-		HMPREF1058_RS13775	0.30	+0.5
1,368,955	-		HMPREF1058_RS13775	0.30	+0.3
1,368,955	-		HMPREF1058_RS13775	0.30	+0.6
1,368,955	-		HMPREF1058_RS13775	0.30	-0.0
1,368,967	+		HMPREF1058_RS13775	0.31	+0.9
1,369,013	-		HMPREF1058_RS13775	0.34	-0.1
1,369,078	+		HMPREF1058_RS13775	0.38	+0.8
1,369,129	-		HMPREF1058_RS13775	0.41	+0.5
1,369,136	-		HMPREF1058_RS13775	0.42	+0.0
1,369,153	+		HMPREF1058_RS13775	0.43	-0.5
1,369,259	-		HMPREF1058_RS13775	0.50	-0.8
1,369,259	-		HMPREF1058_RS13775	0.50	+0.5
1,369,314	+		HMPREF1058_RS13775	0.54	+1.3
1,369,315	-		HMPREF1058_RS13775	0.54	+0.3