Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13750

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,378,884	-		HMPREF1058_RS13755	0.46	+0.9
1,378,939	-		HMPREF1058_RS13755	0.50	-0.5
1,378,943	-		HMPREF1058_RS13755	0.51	+0.6
1,378,964	-		HMPREF1058_RS13755	0.52	-1.3
1,378,966	+		HMPREF1058_RS13755	0.53	+1.0
1,379,017	+		HMPREF1058_RS13755	0.57	+0.4
1,379,072	-		HMPREF1058_RS13755	0.62	+0.4
1,379,114	+		HMPREF1058_RS13755	0.65	-0.5
1,379,153	-		HMPREF1058_RS13755	0.69	-0.4
1,379,213	-		HMPREF1058_RS13755	0.74	-0.2
1,379,234	+		HMPREF1058_RS13755	0.76	+0.2
1,379,244	-		HMPREF1058_RS13755	0.77	-0.9
1,379,366	+		HMPREF1058_RS13755	0.87	+0.4
1,379,516	-				-0.2
1,379,541	-				-1.4
1,379,603	+				+0.1
1,379,604	-				+0.0
1,379,683	-				-0.3
1,379,769	+				-0.2
1,379,769	+				+1.7
1,379,847	-				+1.2
1,379,928	-				+2.3
1,379,929	+				+1.4
1,379,959	+				+0.2
1,379,966	+				+1.2
1,379,972	+				+1.4
1,380,011	+				+1.1
1,380,030	-				+2.4
1,380,034	+				+0.6
1,380,140	+				+0.9
1,380,141	-				+0.2
1,380,156	-				+0.9
1,380,200	-		HMPREF1058_RS13750	0.11	+0.5
1,380,252	-		HMPREF1058_RS13750	0.12	-0.3
1,380,252	-		HMPREF1058_RS13750	0.12	-0.5
1,380,269	+		HMPREF1058_RS13750	0.13	-0.6
1,380,328	+		HMPREF1058_RS13750	0.15	+0.8
1,380,351	-		HMPREF1058_RS13750	0.16	+0.9
1,380,418	+		HMPREF1058_RS13750	0.18	-0.4
1,380,419	-		HMPREF1058_RS13750	0.18	+1.4
1,380,420	+		HMPREF1058_RS13750	0.18	+0.1
1,380,420	+		HMPREF1058_RS13750	0.18	+1.1
1,380,427	+		HMPREF1058_RS13750	0.18	+0.8
1,380,461	+		HMPREF1058_RS13750	0.19	+0.3
1,380,462	-		HMPREF1058_RS13750	0.19	+1.2
1,380,467	+		HMPREF1058_RS13750	0.19	-0.7
1,380,480	-		HMPREF1058_RS13750	0.20	+1.8
1,380,494	+		HMPREF1058_RS13750	0.20	+0.5
1,380,495	-		HMPREF1058_RS13750	0.20	-0.5
1,380,602	+		HMPREF1058_RS13750	0.24	+0.1
1,380,678	-		HMPREF1058_RS13750	0.26	+0.8
1,380,708	-		HMPREF1058_RS13750	0.27	+0.7
1,380,716	-		HMPREF1058_RS13750	0.28	+0.0
1,380,716	-		HMPREF1058_RS13750	0.28	+1.1
1,380,747	-		HMPREF1058_RS13750	0.29	+0.6
1,380,754	-		HMPREF1058_RS13750	0.29	-0.1
1,380,864	+		HMPREF1058_RS13750	0.33	+0.6
1,380,865	-		HMPREF1058_RS13750	0.33	-0.1
1,380,907	-		HMPREF1058_RS13750	0.34	+0.4
1,380,925	+		HMPREF1058_RS13750	0.35	+0.1
1,380,925	+		HMPREF1058_RS13750	0.35	-1.0
1,380,925	+		HMPREF1058_RS13750	0.35	+0.4
1,380,926	-		HMPREF1058_RS13750	0.35	+0.3
1,380,986	-		HMPREF1058_RS13750	0.37	+0.9
1,380,992	+		HMPREF1058_RS13750	0.37	+0.2
1,381,035	-		HMPREF1058_RS13750	0.38	+0.4
1,381,102	+		HMPREF1058_RS13750	0.41	-0.5
1,381,150	-		HMPREF1058_RS13750	0.42	+0.1
1,381,164	-		HMPREF1058_RS13750	0.43	-1.3
1,381,170	-		HMPREF1058_RS13750	0.43	+0.5
1,381,183	+		HMPREF1058_RS13750	0.43	+1.1
1,381,183	+		HMPREF1058_RS13750	0.43	+0.3
1,381,185	+		HMPREF1058_RS13750	0.43	+0.5
1,381,186	-		HMPREF1058_RS13750	0.43	-0.1
1,381,186	-		HMPREF1058_RS13750	0.43	+0.2
1,381,186	-		HMPREF1058_RS13750	0.43	+1.3
1,381,272	-		HMPREF1058_RS13750	0.46	+0.8
1,381,339	+				-0.6
1,381,339	+		HMPREF1058_RS13750	0.48	-0.1
1,381,339	+		HMPREF1058_RS13750	0.48	+0.1
1,381,342	-		HMPREF1058_RS13750	0.48	+0.7
1,381,372	+		HMPREF1058_RS13750	0.49	+1.1
1,381,397	+		HMPREF1058_RS13750	0.50	+0.3
1,381,420	+		HMPREF1058_RS13750	0.51	+0.8
1,381,420	+		HMPREF1058_RS13750	0.51	+0.4
1,381,420	+		HMPREF1058_RS13750	0.51	-0.3
1,381,421	-		HMPREF1058_RS13750	0.51	+1.5
1,381,421	-		HMPREF1058_RS13750	0.51	-0.4
1,381,436	+		HMPREF1058_RS13750	0.52	+0.8
1,381,454	+		HMPREF1058_RS13750	0.52	+0.6
1,381,455	-		HMPREF1058_RS13750	0.52	+0.1
1,381,457	+		HMPREF1058_RS13750	0.52	-0.2
1,381,587	+		HMPREF1058_RS13750	0.57	-0.4
1,381,590	+		HMPREF1058_RS13750	0.57	+0.4
1,381,590	+		HMPREF1058_RS13750	0.57	-0.1
1,381,590	+		HMPREF1058_RS13750	0.57	+0.1
1,381,642	-		HMPREF1058_RS13750	0.58	+1.1
1,381,649	+		HMPREF1058_RS13750	0.59	+0.5
1,381,653	+		HMPREF1058_RS13750	0.59	+0.1
1,381,654	-		HMPREF1058_RS13750	0.59	+0.3
1,381,656	+		HMPREF1058_RS13750	0.59	+0.9
1,381,660	+		HMPREF1058_RS13750	0.59	+0.9
1,381,660	+		HMPREF1058_RS13750	0.59	+0.4
1,381,660	+		HMPREF1058_RS13750	0.59	+0.4
1,381,660	+		HMPREF1058_RS13750	0.59	+1.4
1,381,661	-		HMPREF1058_RS13750	0.59	+0.9
1,381,661	-		HMPREF1058_RS13750	0.59	+0.6
1,381,750	+		HMPREF1058_RS13750	0.62	+0.9
1,381,751	-		HMPREF1058_RS13750	0.62	+1.5
1,381,775	+		HMPREF1058_RS13750	0.63	+0.2
1,381,782	-		HMPREF1058_RS13750	0.63	+1.1
1,381,827	-		HMPREF1058_RS13750	0.65	+2.0
1,381,882	-		HMPREF1058_RS13750	0.66	-0.1
1,381,973	-		HMPREF1058_RS13750	0.69	+0.4
1,382,060	+		HMPREF1058_RS13750	0.72	-0.5
1,382,061	-		HMPREF1058_RS13750	0.72	+0.0
1,382,072	+		HMPREF1058_RS13750	0.73	-0.4
1,382,073	-		HMPREF1058_RS13750	0.73	+1.0
1,382,078	-		HMPREF1058_RS13750	0.73	+2.4
1,382,124	-		HMPREF1058_RS13750	0.74	+1.1
1,382,124	-		HMPREF1058_RS13750	0.74	+0.9
1,382,165	+		HMPREF1058_RS13750	0.76	+0.4
1,382,166	-		HMPREF1058_RS13750	0.76	+1.8
1,382,196	-		HMPREF1058_RS13750	0.77	-0.6
1,382,196	-		HMPREF1058_RS13750	0.77	+1.7
1,382,209	+		HMPREF1058_RS13750	0.77	+0.8
1,382,209	+		HMPREF1058_RS13750	0.77	+0.6
1,382,209	+		HMPREF1058_RS13750	0.77	+1.4
1,382,232	+		HMPREF1058_RS13750	0.78	+0.2
1,382,234	+		HMPREF1058_RS13750	0.78	+0.7
1,382,235	-		HMPREF1058_RS13750	0.78	+1.8
1,382,235	-		HMPREF1058_RS13750	0.78	+0.6
1,382,238	+		HMPREF1058_RS13750	0.78	-0.0
1,382,277	+		HMPREF1058_RS13750	0.80	-0.4
1,382,278	-		HMPREF1058_RS13750	0.80	+1.9
1,382,365	-		HMPREF1058_RS13750	0.82	+0.9
1,382,365	-		HMPREF1058_RS13750	0.82	+0.5
1,382,385	+		HMPREF1058_RS13750	0.83	-0.3
1,382,389	+		HMPREF1058_RS13750	0.83	-0.3
1,382,390	-		HMPREF1058_RS13750	0.83	+2.2
1,382,468	+		HMPREF1058_RS13750	0.86	+0.6
1,382,474	+		HMPREF1058_RS13750	0.86	+0.7
1,382,596	-				+0.6
1,382,604	+				-0.0
1,382,605	-				+0.1
1,382,610	+				+0.9
1,382,624	+				+1.0
1,382,653	+				-0.1
1,382,654	-				+2.9
1,382,654	-				-2.3
1,382,655	+				+1.9
1,382,656	-				+1.8
1,382,656	-				+0.4
1,382,657	+				+0.3
1,382,657	+				+0.9
1,382,672	-				+2.2
1,382,692	+				+0.0
1,382,693	-				+0.1
1,382,693	-				+0.7
1,382,697	+				-1.2
1,382,753	+				-0.2
1,382,754	-				+0.1
1,382,755	+				+0.9
1,382,818	-				+0.0
1,382,830	+				-0.0
1,382,831	-				+1.8
1,382,858	+				-0.1
1,383,048	-				+0.4
1,383,048	-				+0.9
1,383,060	+				+0.8
1,383,060	+				-0.3
1,383,069	-		HMPREF1058_RS13745	0.10	+2.6
1,383,079	+		HMPREF1058_RS13745	0.11	+0.6
1,383,080	-		HMPREF1058_RS13745	0.11	+0.8
1,383,090	-		HMPREF1058_RS13745	0.12	-0.8
1,383,116	-		HMPREF1058_RS13745	0.13	+1.9
1,383,142	-		HMPREF1058_RS13745	0.15	+0.4
1,383,150	+		HMPREF1058_RS13745	0.16	+1.4
1,383,154	+		HMPREF1058_RS13745	0.16	+1.1
1,383,155	-		HMPREF1058_RS13745	0.16	+1.5
1,383,190	+		HMPREF1058_RS13745	0.18	+0.7
1,383,191	-		HMPREF1058_RS13745	0.18	+1.5
1,383,196	+		HMPREF1058_RS13745	0.19	-0.0
1,383,210	+		HMPREF1058_RS13745	0.20	+1.0
1,383,211	-		HMPREF1058_RS13745	0.20	+1.0
1,383,275	+		HMPREF1058_RS13745	0.24	-0.5
1,383,298	+		HMPREF1058_RS13745	0.26	+0.7
1,383,299	-		HMPREF1058_RS13745	0.26	+1.4
1,383,299	-		HMPREF1058_RS13745	0.26	-1.4
1,383,300	+		HMPREF1058_RS13745	0.26	+0.8
1,383,300	+		HMPREF1058_RS13745	0.26	+0.5
1,383,300	+		HMPREF1058_RS13745	0.26	+0.6
1,383,334	-		HMPREF1058_RS13745	0.28	+0.2
1,383,337	-		HMPREF1058_RS13745	0.28	+1.1
1,383,340	+		HMPREF1058_RS13745	0.28	-0.2
1,383,356	-		HMPREF1058_RS13745	0.30	+0.5
1,383,388	-		HMPREF1058_RS13745	0.32	+1.7
1,383,394	-		HMPREF1058_RS13745	0.32	+0.2
1,383,455	+		HMPREF1058_RS13745	0.36	+1.9
1,383,456	-		HMPREF1058_RS13745	0.36	+0.6
1,383,499	-		HMPREF1058_RS13745	0.39	+0.5
1,383,515	-		HMPREF1058_RS13745	0.40	+2.1
1,383,592	+		HMPREF1058_RS13745	0.46	+0.4
1,383,593	-		HMPREF1058_RS13745	0.46	-0.6
1,383,609	+		HMPREF1058_RS13745	0.47	-0.5
1,383,638	+		HMPREF1058_RS13745	0.49	+0.5
1,383,705	+		HMPREF1058_RS13745	0.53	+0.2
1,383,742	+		HMPREF1058_RS13745	0.56	+1.3
1,383,744	+		HMPREF1058_RS13745	0.56	+1.1
1,383,745	-		HMPREF1058_RS13745	0.56	+0.1
1,383,755	+		HMPREF1058_RS13745	0.57	+2.3
1,383,787	-		HMPREF1058_RS13745	0.59	+0.2
1,383,838	-		HMPREF1058_RS13745	0.62	+0.9
1,383,849	+		HMPREF1058_RS13745	0.63	+1.2
1,383,849	+		HMPREF1058_RS13745	0.63	+0.4
1,383,850	-		HMPREF1058_RS13745	0.63	+0.7
1,383,878	-		HMPREF1058_RS13745	0.65	+1.2