Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13745

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
1,381,973	-		HMPREF1058_RS13750	0.69	+0.4
1,382,060	+		HMPREF1058_RS13750	0.72	-0.5
1,382,061	-		HMPREF1058_RS13750	0.72	+0.0
1,382,072	+		HMPREF1058_RS13750	0.73	-0.4
1,382,073	-		HMPREF1058_RS13750	0.73	+1.0
1,382,078	-		HMPREF1058_RS13750	0.73	+2.4
1,382,124	-		HMPREF1058_RS13750	0.74	+1.1
1,382,124	-		HMPREF1058_RS13750	0.74	+0.9
1,382,165	+		HMPREF1058_RS13750	0.76	+0.4
1,382,166	-		HMPREF1058_RS13750	0.76	+1.8
1,382,196	-		HMPREF1058_RS13750	0.77	-0.6
1,382,196	-		HMPREF1058_RS13750	0.77	+1.7
1,382,209	+		HMPREF1058_RS13750	0.77	+0.8
1,382,209	+		HMPREF1058_RS13750	0.77	+0.6
1,382,209	+		HMPREF1058_RS13750	0.77	+1.4
1,382,232	+		HMPREF1058_RS13750	0.78	+0.2
1,382,234	+		HMPREF1058_RS13750	0.78	+0.7
1,382,235	-		HMPREF1058_RS13750	0.78	+1.8
1,382,235	-		HMPREF1058_RS13750	0.78	+0.6
1,382,238	+		HMPREF1058_RS13750	0.78	-0.0
1,382,277	+		HMPREF1058_RS13750	0.80	-0.4
1,382,278	-		HMPREF1058_RS13750	0.80	+1.9
1,382,365	-		HMPREF1058_RS13750	0.82	+0.9
1,382,365	-		HMPREF1058_RS13750	0.82	+0.5
1,382,385	+		HMPREF1058_RS13750	0.83	-0.3
1,382,389	+		HMPREF1058_RS13750	0.83	-0.3
1,382,390	-		HMPREF1058_RS13750	0.83	+2.2
1,382,468	+		HMPREF1058_RS13750	0.86	+0.6
1,382,474	+		HMPREF1058_RS13750	0.86	+0.7
1,382,596	-				+0.6
1,382,604	+				-0.0
1,382,605	-				+0.1
1,382,610	+				+0.9
1,382,624	+				+1.0
1,382,653	+				-0.1
1,382,654	-				+2.9
1,382,654	-				-2.3
1,382,655	+				+1.9
1,382,656	-				+1.8
1,382,656	-				+0.4
1,382,657	+				+0.3
1,382,657	+				+0.9
1,382,672	-				+2.2
1,382,692	+				+0.0
1,382,693	-				+0.1
1,382,693	-				+0.7
1,382,697	+				-1.2
1,382,753	+				-0.2
1,382,754	-				+0.1
1,382,755	+				+0.9
1,382,818	-				+0.0
1,382,830	+				-0.0
1,382,831	-				+1.8
1,382,858	+				-0.1
1,383,048	-				+0.4
1,383,048	-				+0.9
1,383,060	+				+0.8
1,383,060	+				-0.3
1,383,069	-		HMPREF1058_RS13745	0.10	+2.6
1,383,079	+		HMPREF1058_RS13745	0.11	+0.6
1,383,080	-		HMPREF1058_RS13745	0.11	+0.8
1,383,090	-		HMPREF1058_RS13745	0.12	-0.8
1,383,116	-		HMPREF1058_RS13745	0.13	+1.9
1,383,142	-		HMPREF1058_RS13745	0.15	+0.4
1,383,150	+		HMPREF1058_RS13745	0.16	+1.4
1,383,154	+		HMPREF1058_RS13745	0.16	+1.1
1,383,155	-		HMPREF1058_RS13745	0.16	+1.5
1,383,190	+		HMPREF1058_RS13745	0.18	+0.7
1,383,191	-		HMPREF1058_RS13745	0.18	+1.5
1,383,196	+		HMPREF1058_RS13745	0.19	-0.0
1,383,210	+		HMPREF1058_RS13745	0.20	+1.0
1,383,211	-		HMPREF1058_RS13745	0.20	+1.0
1,383,275	+		HMPREF1058_RS13745	0.24	-0.5
1,383,298	+		HMPREF1058_RS13745	0.26	+0.7
1,383,299	-		HMPREF1058_RS13745	0.26	+1.4
1,383,299	-		HMPREF1058_RS13745	0.26	-1.4
1,383,300	+		HMPREF1058_RS13745	0.26	+0.8
1,383,300	+		HMPREF1058_RS13745	0.26	+0.5
1,383,300	+		HMPREF1058_RS13745	0.26	+0.6
1,383,334	-		HMPREF1058_RS13745	0.28	+0.2
1,383,337	-		HMPREF1058_RS13745	0.28	+1.1
1,383,340	+		HMPREF1058_RS13745	0.28	-0.2
1,383,356	-		HMPREF1058_RS13745	0.30	+0.5
1,383,388	-		HMPREF1058_RS13745	0.32	+1.7
1,383,394	-		HMPREF1058_RS13745	0.32	+0.2
1,383,455	+		HMPREF1058_RS13745	0.36	+1.9
1,383,456	-		HMPREF1058_RS13745	0.36	+0.6
1,383,499	-		HMPREF1058_RS13745	0.39	+0.5
1,383,515	-		HMPREF1058_RS13745	0.40	+2.1
1,383,592	+		HMPREF1058_RS13745	0.46	+0.4
1,383,593	-		HMPREF1058_RS13745	0.46	-0.6
1,383,609	+		HMPREF1058_RS13745	0.47	-0.5
1,383,638	+		HMPREF1058_RS13745	0.49	+0.5
1,383,705	+		HMPREF1058_RS13745	0.53	+0.2
1,383,742	+		HMPREF1058_RS13745	0.56	+1.3
1,383,744	+		HMPREF1058_RS13745	0.56	+1.1
1,383,745	-		HMPREF1058_RS13745	0.56	+0.1
1,383,755	+		HMPREF1058_RS13745	0.57	+2.3
1,383,787	-		HMPREF1058_RS13745	0.59	+0.2
1,383,838	-		HMPREF1058_RS13745	0.62	+0.9
1,383,849	+		HMPREF1058_RS13745	0.63	+1.2
1,383,849	+		HMPREF1058_RS13745	0.63	+0.4
1,383,850	-		HMPREF1058_RS13745	0.63	+0.7
1,383,878	-		HMPREF1058_RS13745	0.65	+1.2
1,384,006	+		HMPREF1058_RS13745	0.74	+1.0
1,384,007	-		HMPREF1058_RS13745	0.74	+0.8
1,384,013	+		HMPREF1058_RS13745	0.74	-0.1
1,384,013	+		HMPREF1058_RS13745	0.74	+0.4
1,384,014	-		HMPREF1058_RS13745	0.74	+0.7
1,384,038	+		HMPREF1058_RS13745	0.76	+0.6
1,384,056	-		HMPREF1058_RS13745	0.77	+1.9
1,384,062	-		HMPREF1058_RS13745	0.77	-0.3
1,384,092	-		HMPREF1058_RS13745	0.79	+0.4
1,384,116	-		HMPREF1058_RS13745	0.81	+0.5
1,384,139	+		HMPREF1058_RS13745	0.83	-0.0
1,384,210	-		HMPREF1058_RS13745	0.87	+1.0
1,384,217	+		HMPREF1058_RS13745	0.88	+1.2
1,384,217	+		HMPREF1058_RS13745	0.88	+0.1
1,384,253	+				+1.4
1,384,255	+				-0.4
1,384,256	-				+2.1
1,384,288	+				+1.6
1,384,290	+				+0.1
1,384,290	+				+0.1
1,384,291	-				+1.9
1,384,293	+				+0.4
1,384,297	+				+0.1
1,384,324	-				+0.9
1,384,329	+				+1.5
1,384,381	-				+1.5
1,384,467	-				+0.4
1,384,497	+				-1.4
1,384,521	-				+0.3
1,384,621	+		HMPREF1058_RS13740	0.11	-1.8
1,384,622	-		HMPREF1058_RS13740	0.11	+0.1
1,384,622	-		HMPREF1058_RS13740	0.11	-0.3
1,384,623	+		HMPREF1058_RS13740	0.11	-0.0
1,384,623	+		HMPREF1058_RS13740	0.11	+1.3
1,384,627	-		HMPREF1058_RS13740	0.12	+0.9
1,384,629	-		HMPREF1058_RS13740	0.12	+0.2
1,384,683	+		HMPREF1058_RS13740	0.20	-1.2
1,384,704	+		HMPREF1058_RS13740	0.23	-0.9
1,384,705	-		HMPREF1058_RS13740	0.23	+2.2
1,384,705	-		HMPREF1058_RS13740	0.23	-0.7
1,384,761	+		HMPREF1058_RS13740	0.31	+0.7
1,384,761	+		HMPREF1058_RS13740	0.31	-0.8
1,384,762	-		HMPREF1058_RS13740	0.31	+0.7
1,384,762	-		HMPREF1058_RS13740	0.31	-0.0
1,384,765	+		HMPREF1058_RS13740	0.32	-0.6
1,384,766	-		HMPREF1058_RS13740	0.32	+0.1
1,384,766	-		HMPREF1058_RS13740	0.32	-0.3
1,384,771	+		HMPREF1058_RS13740	0.33	+0.6
1,384,771	+		HMPREF1058_RS13740	0.33	+0.9
1,384,771	+		HMPREF1058_RS13740	0.33	-0.8
1,384,771	+		HMPREF1058_RS13740	0.33	-0.8
1,384,875	+		HMPREF1058_RS13740	0.48	-0.8
1,384,876	-		HMPREF1058_RS13740	0.48	-0.7
1,384,934	+		HMPREF1058_RS13740	0.56	+1.0
1,384,965	-		HMPREF1058_RS13740	0.61	+0.0
1,384,997	-		HMPREF1058_RS13740	0.65	-0.5
1,384,997	-				+1.5
1,385,052	+		HMPREF1058_RS13740	0.73	-0.4
1,385,063	+		HMPREF1058_RS13740	0.75	-1.4
1,385,096	+		HMPREF1058_RS13740	0.80	+0.6
1,385,106	-		HMPREF1058_RS13740	0.81	+0.7
1,385,153	+		HMPREF1058_RS13740	0.88	-1.2
1,385,153	+		HMPREF1058_RS13740	0.88	-0.5
1,385,153	+		HMPREF1058_RS13740	0.88	-1.4
1,385,154	-		HMPREF1058_RS13740	0.88	-0.5
1,385,154	-		HMPREF1058_RS13740	0.88	-0.7
1,385,169	+				+0.2
1,385,217	+				-0.4
1,385,221	+				-1.0
1,385,221	+				-0.1
1,385,222	-				-0.7
1,385,223	+				-1.1
1,385,230	-				+0.7
1,385,230	-				+0.1
1,385,231	+				-0.2
1,385,231	+				+1.1
1,385,231	+				-0.6
1,385,232	-				+0.7
1,385,232	-				+0.0
1,385,232	-				-1.5
1,385,235	+				-0.0
1,385,236	-				+0.2
1,385,253	-				+0.9
1,385,298	+				+0.2
1,385,312	+				-0.4