Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12810 and HMPREF1058_RS12805 are separated by 80 nucleotides HMPREF1058_RS12805 and HMPREF1058_RS12800 are separated by 168 nucleotides HMPREF1058_RS12800 and HMPREF1058_RS12795 are separated by 89 nucleotides HMPREF1058_RS12795 and HMPREF1058_RS12790 are separated by 294 nucleotides
HMPREF1058_RS12810: HMPREF1058_RS12810 - VanZ family protein, at 26,640 to 27,026
_RS12810
HMPREF1058_RS12805: HMPREF1058_RS12805 - RNA polymerase sigma factor, at 27,107 to 27,610
_RS12805
HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253
_RS12800
HMPREF1058_RS12795: HMPREF1058_RS12795 - CYTH domain-containing protein, at 30,343 to 30,813
_RS12795
HMPREF1058_RS12790: HMPREF1058_RS12790 - peptide chain release factor 2, at 31,108 to 32,223
_RS12790
Position (kb) 27
28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.804 kb on - strand, within HMPREF1058_RS12810 at 26.845 kb on + strand, within HMPREF1058_RS12810 at 26.846 kb on - strand, within HMPREF1058_RS12810 at 26.863 kb on + strand, within HMPREF1058_RS12810 at 26.864 kb on - strand, within HMPREF1058_RS12810 at 26.876 kb on + strand, within HMPREF1058_RS12810 at 26.877 kb on - strand, within HMPREF1058_RS12810 at 26.907 kb on + strand, within HMPREF1058_RS12810 at 26.981 kb on - strand, within HMPREF1058_RS12810 at 26.989 kb on - strand at 26.991 kb on + strand at 26.992 kb on - strand at 26.995 kb on + strand at 26.995 kb on + strand at 27.009 kb on - strand at 27.010 kb on + strand at 27.011 kb on - strand at 27.011 kb on - strand at 27.018 kb on - strand at 27.082 kb on + strand at 27.084 kb on + strand at 27.089 kb on + strand at 27.108 kb on + strand at 27.109 kb on - strand at 27.208 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.224 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.228 kb on + strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.229 kb on - strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.232 kb on + strand, within HMPREF1058_RS12805 at 27.233 kb on - strand, within HMPREF1058_RS12805 at 27.282 kb on - strand, within HMPREF1058_RS12805 at 27.409 kb on + strand, within HMPREF1058_RS12805 at 27.410 kb on - strand, within HMPREF1058_RS12805 at 27.490 kb on + strand, within HMPREF1058_RS12805 at 27.574 kb on + strand at 27.578 kb on + strand at 27.579 kb on - strand at 27.582 kb on - strand at 27.592 kb on + strand at 27.613 kb on + strand at 27.614 kb on - strand at 27.614 kb on - strand at 27.714 kb on + strand at 27.715 kb on - strand at 27.727 kb on - strand at 27.901 kb on + strand at 27.987 kb on + strand at 28.022 kb on - strand at 28.069 kb on - strand, within HMPREF1058_RS12800 at 28.114 kb on + strand, within HMPREF1058_RS12800 at 28.225 kb on + strand, within HMPREF1058_RS12800 at 28.236 kb on + strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.237 kb on - strand, within HMPREF1058_RS12800 at 28.316 kb on - strand, within HMPREF1058_RS12800 at 28.326 kb on - strand, within HMPREF1058_RS12800 at 28.331 kb on - strand, within HMPREF1058_RS12800 at 28.336 kb on - strand, within HMPREF1058_RS12800 at 28.340 kb on - strand, within HMPREF1058_RS12800 at 28.371 kb on + strand, within HMPREF1058_RS12800 at 28.380 kb on - strand, within HMPREF1058_RS12800 at 28.380 kb on - strand, within HMPREF1058_RS12800 at 28.381 kb on + strand, within HMPREF1058_RS12800 at 28.388 kb on - strand, within HMPREF1058_RS12800 at 28.402 kb on - strand, within HMPREF1058_RS12800 at 28.418 kb on + strand, within HMPREF1058_RS12800 at 28.570 kb on + strand, within HMPREF1058_RS12800 at 28.571 kb on - strand, within HMPREF1058_RS12800 at 28.573 kb on + strand, within HMPREF1058_RS12800 at 28.690 kb on + strand, within HMPREF1058_RS12800 at 28.696 kb on + strand, within HMPREF1058_RS12800 at 28.697 kb on - strand, within HMPREF1058_RS12800 at 28.780 kb on + strand, within HMPREF1058_RS12800 at 28.788 kb on + strand, within HMPREF1058_RS12800 at 28.788 kb on + strand, within HMPREF1058_RS12800 at 28.789 kb on - strand, within HMPREF1058_RS12800 at 28.795 kb on + strand, within HMPREF1058_RS12800 at 28.813 kb on - strand, within HMPREF1058_RS12800 at 28.816 kb on + strand, within HMPREF1058_RS12800 at 28.817 kb on - strand, within HMPREF1058_RS12800 at 28.817 kb on - strand, within HMPREF1058_RS12800 at 28.879 kb on - strand, within HMPREF1058_RS12800 at 28.883 kb on + strand, within HMPREF1058_RS12800 at 29.283 kb on + strand, within HMPREF1058_RS12800 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.420 kb on - strand, within HMPREF1058_RS12800 at 29.421 kb on + strand, within HMPREF1058_RS12800 at 29.428 kb on - strand, within HMPREF1058_RS12800 at 29.481 kb on + strand, within HMPREF1058_RS12800 at 29.492 kb on - strand, within HMPREF1058_RS12800 at 29.521 kb on + strand, within HMPREF1058_RS12800 at 29.554 kb on + strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.586 kb on + strand, within HMPREF1058_RS12800 at 29.616 kb on - strand, within HMPREF1058_RS12800 at 29.618 kb on - strand, within HMPREF1058_RS12800 at 29.624 kb on - strand, within HMPREF1058_RS12800 at 29.642 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.666 kb on - strand, within HMPREF1058_RS12800 at 29.708 kb on - strand, within HMPREF1058_RS12800 at 29.713 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.822 kb on - strand, within HMPREF1058_RS12800 at 29.824 kb on + strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.826 kb on + strand, within HMPREF1058_RS12800 at 29.840 kb on + strand, within HMPREF1058_RS12800 at 29.992 kb on + strand, within HMPREF1058_RS12800 at 30.109 kb on + strand at 30.110 kb on - strand at 30.143 kb on + strand at 30.226 kb on + strand at 30.226 kb on + strand at 30.255 kb on + strand at 30.334 kb on - strand at 30.335 kb on + strand at 30.337 kb on + strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.550 kb on - strand, within HMPREF1058_RS12795 at 30.717 kb on + strand at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.724 kb on - strand, within HMPREF1058_RS12795 at 30.725 kb on + strand, within HMPREF1058_RS12795 at 30.744 kb on + strand, within HMPREF1058_RS12795 at 30.745 kb on - strand, within HMPREF1058_RS12795 at 30.767 kb on + strand at 30.785 kb on - strand at 30.799 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.891 kb on + strand at 30.891 kb on + strand at 30.892 kb on - strand at 30.900 kb on + strand at 30.913 kb on + strand at 30.923 kb on + strand at 30.933 kb on - strand at 30.953 kb on + strand at 30.953 kb on + strand at 30.961 kb on + strand at 30.962 kb on - strand at 30.988 kb on + strand at 31.016 kb on - strand at 31.037 kb on - strand at 31.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 26,804 - HMPREF1058_RS12810 0.42 +1.0 26,845 + HMPREF1058_RS12810 0.53 -0.5 26,846 - HMPREF1058_RS12810 0.53 -0.1 26,863 + HMPREF1058_RS12810 0.58 +1.4 26,864 - HMPREF1058_RS12810 0.58 +0.7 26,876 + HMPREF1058_RS12810 0.61 -0.1 26,877 - HMPREF1058_RS12810 0.61 +0.8 26,907 + HMPREF1058_RS12810 0.69 -0.3 26,981 - HMPREF1058_RS12810 0.88 +0.1 26,989 - +0.9 26,991 + +0.6 26,992 - -0.3 26,995 + +0.9 26,995 + +0.0 27,009 - -0.7 27,010 + +0.2 27,011 - +0.0 27,011 - +0.1 27,018 - +0.5 27,082 + +0.9 27,084 + -0.2 27,089 + +0.0 27,108 + -1.4 27,109 - -0.4 27,208 + HMPREF1058_RS12805 0.20 -0.5 27,224 + HMPREF1058_RS12805 0.23 -1.1 27,224 + HMPREF1058_RS12805 0.23 -1.8 27,228 + HMPREF1058_RS12805 0.24 +0.4 27,228 + HMPREF1058_RS12805 0.24 -0.2 27,228 + HMPREF1058_RS12805 0.24 -0.3 27,228 + HMPREF1058_RS12805 0.24 -0.7 27,228 + HMPREF1058_RS12805 0.24 +0.6 27,228 + HMPREF1058_RS12805 0.24 +0.4 27,228 + HMPREF1058_RS12805 0.24 +1.0 27,229 - HMPREF1058_RS12805 0.24 -0.6 27,229 - HMPREF1058_RS12805 0.24 -0.0 27,229 - HMPREF1058_RS12805 0.24 +0.2 27,232 + HMPREF1058_RS12805 0.25 +0.9 27,232 + HMPREF1058_RS12805 0.25 -1.1 27,233 - HMPREF1058_RS12805 0.25 -0.6 27,282 - HMPREF1058_RS12805 0.35 -0.4 27,409 + HMPREF1058_RS12805 0.60 -0.9 27,410 - HMPREF1058_RS12805 0.60 +0.4 27,490 + HMPREF1058_RS12805 0.76 -1.3 27,574 + +0.2 27,578 + -2.0 27,579 - -0.2 27,582 - -1.1 27,592 + -0.2 27,613 + -0.4 27,614 - +0.7 27,614 - -0.1 27,714 + +0.6 27,715 - +1.0 27,727 - +0.1 27,901 + -0.1 27,987 + +0.2 28,022 - +0.6 28,069 - HMPREF1058_RS12800 0.12 +0.2 28,114 + HMPREF1058_RS12800 0.14 +1.0 28,225 + HMPREF1058_RS12800 0.18 +0.7 28,236 + HMPREF1058_RS12800 0.18 +0.4 28,237 - HMPREF1058_RS12800 0.19 +0.1 28,237 - HMPREF1058_RS12800 0.19 -0.2 28,237 - HMPREF1058_RS12800 0.19 -0.2 28,237 - HMPREF1058_RS12800 0.19 +0.5 28,316 - HMPREF1058_RS12800 0.22 -0.4 28,326 - HMPREF1058_RS12800 0.22 +2.1 28,331 - HMPREF1058_RS12800 0.22 +0.1 28,336 - HMPREF1058_RS12800 0.23 +1.8 28,340 - HMPREF1058_RS12800 0.23 +0.1 28,371 + HMPREF1058_RS12800 0.24 +1.0 28,380 - HMPREF1058_RS12800 0.24 -1.1 28,380 - HMPREF1058_RS12800 0.24 -1.6 28,381 + HMPREF1058_RS12800 0.24 +1.0 28,388 - HMPREF1058_RS12800 0.25 +0.2 28,402 - HMPREF1058_RS12800 0.25 +0.4 28,418 + HMPREF1058_RS12800 0.26 -0.4 28,570 + HMPREF1058_RS12800 0.32 +1.0 28,571 - HMPREF1058_RS12800 0.32 +1.2 28,573 + HMPREF1058_RS12800 0.32 +0.9 28,690 + HMPREF1058_RS12800 0.37 +0.5 28,696 + HMPREF1058_RS12800 0.37 -0.1 28,697 - HMPREF1058_RS12800 0.37 +0.2 28,780 + HMPREF1058_RS12800 0.40 +2.0 28,788 + HMPREF1058_RS12800 0.41 +1.2 28,788 + HMPREF1058_RS12800 0.41 +0.6 28,789 - HMPREF1058_RS12800 0.41 +1.0 28,795 + HMPREF1058_RS12800 0.41 +1.5 28,813 - HMPREF1058_RS12800 0.42 +1.3 28,816 + HMPREF1058_RS12800 0.42 -0.1 28,817 - HMPREF1058_RS12800 0.42 +0.6 28,817 - HMPREF1058_RS12800 0.42 +0.0 28,879 - HMPREF1058_RS12800 0.44 +1.2 28,883 + HMPREF1058_RS12800 0.45 +0.8 29,283 + HMPREF1058_RS12800 0.61 -1.2 29,415 + HMPREF1058_RS12800 0.66 -0.4 29,415 + HMPREF1058_RS12800 0.66 +1.2 29,420 - HMPREF1058_RS12800 0.66 +0.0 29,421 + HMPREF1058_RS12800 0.66 +0.9 29,428 - HMPREF1058_RS12800 0.67 -0.7 29,481 + HMPREF1058_RS12800 0.69 +0.3 29,492 - HMPREF1058_RS12800 0.69 -0.0 29,521 + HMPREF1058_RS12800 0.70 +1.5 29,554 + HMPREF1058_RS12800 0.72 +0.2 29,555 - HMPREF1058_RS12800 0.72 -0.9 29,555 - HMPREF1058_RS12800 0.72 -0.2 29,586 + HMPREF1058_RS12800 0.73 +0.2 29,616 - HMPREF1058_RS12800 0.74 +0.9 29,618 - HMPREF1058_RS12800 0.74 +0.5 29,624 - HMPREF1058_RS12800 0.75 +1.6 29,642 - HMPREF1058_RS12800 0.75 +1.1 29,652 - HMPREF1058_RS12800 0.76 +0.3 29,652 - HMPREF1058_RS12800 0.76 -0.5 29,666 - HMPREF1058_RS12800 0.76 -0.6 29,708 - HMPREF1058_RS12800 0.78 -0.8 29,713 + HMPREF1058_RS12800 0.78 +1.7 29,819 + HMPREF1058_RS12800 0.82 +1.0 29,819 + HMPREF1058_RS12800 0.82 +0.1 29,822 - HMPREF1058_RS12800 0.83 -0.2 29,824 + HMPREF1058_RS12800 0.83 +0.0 29,825 - HMPREF1058_RS12800 0.83 +1.0 29,825 - HMPREF1058_RS12800 0.83 +0.3 29,825 - HMPREF1058_RS12800 0.83 +0.8 29,825 - HMPREF1058_RS12800 0.83 +0.2 29,825 - HMPREF1058_RS12800 0.83 -1.2 29,826 + HMPREF1058_RS12800 0.83 -0.1 29,840 + HMPREF1058_RS12800 0.83 -0.1 29,992 + HMPREF1058_RS12800 0.89 +0.7 30,109 + -0.6 30,110 - +1.6 30,143 + +0.9 30,226 + -0.2 30,226 + -0.8 30,255 + -0.3 30,334 - +0.5 30,335 + +0.7 30,337 + +0.2 30,338 - -0.2 30,338 - -0.3 30,338 - +0.2 30,550 - HMPREF1058_RS12795 0.44 -1.5 30,717 + -1.8 30,723 + HMPREF1058_RS12795 0.81 -1.0 30,723 + HMPREF1058_RS12795 0.81 -1.2 30,724 - HMPREF1058_RS12795 0.81 -0.6 30,725 + HMPREF1058_RS12795 0.81 -1.0 30,744 + HMPREF1058_RS12795 0.85 -2.3 30,745 - HMPREF1058_RS12795 0.85 -0.9 30,767 + -3.0 30,785 - -1.0 30,799 + -0.1 30,828 + -0.0 30,828 + -0.7 30,891 + -0.7 30,891 + -2.8 30,892 - +0.9 30,900 + -1.0 30,913 + -1.5 30,923 + -1.4 30,933 - +0.4 30,953 + -0.4 30,953 + -2.3 30,961 + -0.8 30,962 - -3.5 30,988 + -2.1 31,016 - +0.1 31,037 - +0.3 31,091 - -0.6
Or see this region's nucleotide sequence