Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12785

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
32,352	+				+0.6
32,352	+				+0.6
32,445	+				-1.0
32,446	-				+0.1
32,461	-				+1.7
32,503	-		HMPREF1058_RS12785	0.12	+0.5
32,550	+				+1.9
32,584	-		HMPREF1058_RS12785	0.17	+1.9
32,601	+		HMPREF1058_RS12785	0.18	-0.2
32,602	-		HMPREF1058_RS12785	0.18	+0.9
32,618	+		HMPREF1058_RS12785	0.19	-0.1
32,662	-		HMPREF1058_RS12785	0.21	+1.4
32,664	-		HMPREF1058_RS12785	0.21	+1.5
32,728	+		HMPREF1058_RS12785	0.25	-0.2
32,728	+		HMPREF1058_RS12785	0.25	-0.0
32,728	+		HMPREF1058_RS12785	0.25	+0.5
32,728	+		HMPREF1058_RS12785	0.25	+1.7
32,732	+				-0.6
32,799	+		HMPREF1058_RS12785	0.29	+0.9
32,804	+		HMPREF1058_RS12785	0.29	-1.1
32,804	+		HMPREF1058_RS12785	0.29	+2.1
32,831	-		HMPREF1058_RS12785	0.30	+2.7
32,836	+				+0.4
32,855	-		HMPREF1058_RS12785	0.32	-0.1
32,968	-		HMPREF1058_RS12785	0.38	+1.3
32,971	-		HMPREF1058_RS12785	0.38	+1.1
32,998	+		HMPREF1058_RS12785	0.40	+1.2
33,140	+		HMPREF1058_RS12785	0.48	+1.2
33,156	+		HMPREF1058_RS12785	0.48	+0.2
33,277	-		HMPREF1058_RS12785	0.55	+0.8
33,334	-		HMPREF1058_RS12785	0.58	-0.5
33,342	+		HMPREF1058_RS12785	0.59	+0.1
33,342	+		HMPREF1058_RS12785	0.59	-0.2
33,411	+		HMPREF1058_RS12785	0.63	+0.5
33,473	+		HMPREF1058_RS12785	0.66	-1.2
33,473	+		HMPREF1058_RS12785	0.66	+1.2
33,535	-		HMPREF1058_RS12785	0.69	-0.1
33,567	+		HMPREF1058_RS12785	0.71	+0.9
33,682	-		HMPREF1058_RS12785	0.78	-1.1
33,731	+		HMPREF1058_RS12785	0.80	+0.5
33,732	-				+1.3
33,757	-		HMPREF1058_RS12785	0.82	+0.5
33,757	-		HMPREF1058_RS12785	0.82	+0.3
33,757	-		HMPREF1058_RS12785	0.82	-0.1
33,757	-		HMPREF1058_RS12785	0.82	+0.7
33,759	-		HMPREF1058_RS12785	0.82	+0.3
33,779	-		HMPREF1058_RS12785	0.83	+0.8
33,784	-		HMPREF1058_RS12785	0.83	+0.2
33,784	-		HMPREF1058_RS12785	0.83	+0.4
33,784	-		HMPREF1058_RS12785	0.83	+0.2
33,785	+		HMPREF1058_RS12785	0.83	+0.5
33,785	+		HMPREF1058_RS12785	0.83	+0.5
33,785	+		HMPREF1058_RS12785	0.83	+1.0
33,785	+		HMPREF1058_RS12785	0.83	-0.7
33,785	+		HMPREF1058_RS12785	0.83	+0.6
33,786	-		HMPREF1058_RS12785	0.83	+0.6
33,786	-		HMPREF1058_RS12785	0.83	+0.5
33,823	+		HMPREF1058_RS12785	0.85	+0.9
33,864	-		HMPREF1058_RS12785	0.88	+0.7
33,901	-		HMPREF1058_RS12785	0.90	+2.2
33,916	+				+0.4
33,916	+				+0.5
33,918	+				+0.9
33,923	-				-0.9
33,923	-				-0.3
33,928	+				+1.7
34,003	-				+0.4
34,057	+				+0.8
34,151	+				+0.7
34,282	+				-0.9
34,282	+				+1.4
34,309	-				-1.2
34,310	+				-2.8
34,311	-				-1.4
34,311	-				-2.9
34,316	-				-2.4
34,411	+		HMPREF1058_RS12780	0.10	-3.1
34,411	+		HMPREF1058_RS12780	0.10	-3.4
34,411	+		HMPREF1058_RS12780	0.10	-5.8
34,411	+				-1.4
34,411	+		HMPREF1058_RS12780	0.10	-4.1
34,412	-		HMPREF1058_RS12780	0.11	-2.8
34,429	-		HMPREF1058_RS12780	0.12	-3.5
34,623	-		HMPREF1058_RS12780	0.30	-1.4
34,623	-		HMPREF1058_RS12780	0.30	-4.3
34,625	+		HMPREF1058_RS12780	0.31	-4.0
34,632	-		HMPREF1058_RS12780	0.31	-2.5
34,657	-		HMPREF1058_RS12780	0.34	-2.3
34,672	+		HMPREF1058_RS12780	0.35	-0.6
34,727	+		HMPREF1058_RS12780	0.40	-4.0
34,727	+		HMPREF1058_RS12780	0.40	-2.6
34,748	+		HMPREF1058_RS12780	0.42	-3.6
34,884	+		HMPREF1058_RS12780	0.55	-5.5
34,983	-		HMPREF1058_RS12780	0.64	-4.2
35,017	-		HMPREF1058_RS12780	0.67	-0.6
35,056	+		HMPREF1058_RS12780	0.71	-4.0
35,057	-		HMPREF1058_RS12780	0.71	-4.8