Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12705

Experiment: Xylan from corn core 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS12715 and HMPREF1058_RS12710 are separated by 163 nucleotidesHMPREF1058_RS12710 and HMPREF1058_RS12705 are separated by 71 nucleotidesHMPREF1058_RS12705 and HMPREF1058_RS12700 are separated by 8 nucleotidesHMPREF1058_RS12700 and HMPREF1058_RS12695 are separated by 104 nucleotides HMPREF1058_RS12715: HMPREF1058_RS12715 - porin family protein, at 51,544 to 52,143 _RS12715 HMPREF1058_RS12710: HMPREF1058_RS12710 - DUF2795 domain-containing protein, at 52,307 to 52,528 _RS12710 HMPREF1058_RS12705: HMPREF1058_RS12705 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 52,600 to 53,163 _RS12705 HMPREF1058_RS12700: HMPREF1058_RS12700 - hypothetical protein, at 53,172 to 53,795 _RS12700 HMPREF1058_RS12695: HMPREF1058_RS12695 - tripeptidyl aminopeptidase, at 53,900 to 55,210 _RS12695 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.628 kb on - strand, within HMPREF1058_RS12715at 51.628 kb on - strand, within HMPREF1058_RS12715at 51.630 kb on - strand, within HMPREF1058_RS12715at 51.632 kb on + strand, within HMPREF1058_RS12715at 51.639 kb on - strand, within HMPREF1058_RS12715at 51.639 kb on - strand, within HMPREF1058_RS12715at 51.639 kb on - strand, within HMPREF1058_RS12715at 51.685 kb on + strand, within HMPREF1058_RS12715at 51.685 kb on + strand, within HMPREF1058_RS12715at 51.695 kb on - strand, within HMPREF1058_RS12715at 51.695 kb on - strand, within HMPREF1058_RS12715at 51.695 kb on - strand, within HMPREF1058_RS12715at 51.716 kb on - strand, within HMPREF1058_RS12715at 51.808 kb on - strand, within HMPREF1058_RS12715at 51.808 kb on - strand, within HMPREF1058_RS12715at 51.808 kb on - strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.809 kb on + strand, within HMPREF1058_RS12715at 51.810 kb on - strand, within HMPREF1058_RS12715at 51.810 kb on - strand, within HMPREF1058_RS12715at 51.810 kb on - strand, within HMPREF1058_RS12715at 51.825 kb on + strand, within HMPREF1058_RS12715at 51.920 kb on + strand, within HMPREF1058_RS12715at 51.921 kb on - strand, within HMPREF1058_RS12715at 51.923 kb on - strand, within HMPREF1058_RS12715at 51.999 kb on + strand, within HMPREF1058_RS12715at 51.999 kb on + strand, within HMPREF1058_RS12715at 52.044 kb on + strand, within HMPREF1058_RS12715at 52.060 kb on + strand, within HMPREF1058_RS12715at 52.108 kb on + strandat 52.114 kb on + strandat 52.128 kb on + strandat 52.128 kb on + strandat 52.129 kb on - strandat 52.129 kb on - strandat 52.132 kb on - strandat 52.132 kb on - strandat 52.175 kb on + strandat 52.192 kb on + strandat 52.194 kb on + strandat 52.195 kb on - strandat 52.308 kb on + strandat 52.589 kb on - strandat 52.592 kb on - strandat 52.597 kb on - strandat 52.717 kb on + strand, within HMPREF1058_RS12705at 52.718 kb on - strand, within HMPREF1058_RS12705at 52.821 kb on + strand, within HMPREF1058_RS12705at 52.899 kb on + strand, within HMPREF1058_RS12705at 52.900 kb on - strand, within HMPREF1058_RS12705at 52.900 kb on - strand, within HMPREF1058_RS12705at 52.964 kb on - strand, within HMPREF1058_RS12705at 52.968 kb on + strand, within HMPREF1058_RS12705at 52.975 kb on + strand, within HMPREF1058_RS12705at 53.016 kb on - strand, within HMPREF1058_RS12705at 53.077 kb on + strand, within HMPREF1058_RS12705at 53.077 kb on + strand, within HMPREF1058_RS12705at 53.079 kb on + strand, within HMPREF1058_RS12705at 53.108 kb on - strandat 53.144 kb on + strandat 53.144 kb on + strandat 53.144 kb on + strandat 53.145 kb on - strandat 53.147 kb on - strandat 53.147 kb on - strandat 53.147 kb on - strandat 53.809 kb on - strandat 53.877 kb on - strandat 53.920 kb on + strandat 53.921 kb on - strandat 54.066 kb on - strand, within HMPREF1058_RS12695at 54.069 kb on + strand, within HMPREF1058_RS12695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
remove
51,628 - HMPREF1058_RS12715 0.14 +0.4
51,628 - HMPREF1058_RS12715 0.14 +0.2
51,630 - HMPREF1058_RS12715 0.14 -1.1
51,632 + HMPREF1058_RS12715 0.15 +0.7
51,639 - HMPREF1058_RS12715 0.16 -0.3
51,639 - HMPREF1058_RS12715 0.16 -1.0
51,639 - HMPREF1058_RS12715 0.16 -0.2
51,685 + HMPREF1058_RS12715 0.23 +0.2
51,685 + HMPREF1058_RS12715 0.23 -0.4
51,695 - HMPREF1058_RS12715 0.25 +0.1
51,695 - HMPREF1058_RS12715 0.25 +0.6
51,695 - HMPREF1058_RS12715 0.25 +0.4
51,716 - HMPREF1058_RS12715 0.29 +1.2
51,808 - HMPREF1058_RS12715 0.44 -1.1
51,808 - HMPREF1058_RS12715 0.44 +0.5
51,808 - HMPREF1058_RS12715 0.44 +1.2
51,809 + HMPREF1058_RS12715 0.44 +0.0
51,809 + HMPREF1058_RS12715 0.44 +0.1
51,809 + HMPREF1058_RS12715 0.44 -1.0
51,809 + HMPREF1058_RS12715 0.44 +0.3
51,809 + HMPREF1058_RS12715 0.44 +0.6
51,809 + HMPREF1058_RS12715 0.44 +1.1
51,810 - HMPREF1058_RS12715 0.44 +0.5
51,810 - HMPREF1058_RS12715 0.44 +0.2
51,810 - HMPREF1058_RS12715 0.44 +0.4
51,825 + HMPREF1058_RS12715 0.47 +0.4
51,920 + HMPREF1058_RS12715 0.63 +0.4
51,921 - HMPREF1058_RS12715 0.63 +0.1
51,923 - HMPREF1058_RS12715 0.63 -0.2
51,999 + HMPREF1058_RS12715 0.76 -0.2
51,999 + HMPREF1058_RS12715 0.76 +0.0
52,044 + HMPREF1058_RS12715 0.83 -0.9
52,060 + HMPREF1058_RS12715 0.86 +0.4
52,108 + -0.7
52,114 + -0.4
52,128 + +1.2
52,128 + -0.1
52,129 - -0.3
52,129 - +0.5
52,132 - +0.1
52,132 - -0.8
52,175 + -0.6
52,192 + +0.0
52,194 + +0.9
52,195 - -0.0
52,308 + +1.2
52,589 - +0.5
52,592 - +0.2
52,597 - -0.7
52,717 + HMPREF1058_RS12705 0.21 +0.9
52,718 - HMPREF1058_RS12705 0.21 +0.3
52,821 + HMPREF1058_RS12705 0.39 +2.9
52,899 + HMPREF1058_RS12705 0.53 +0.9
52,900 - HMPREF1058_RS12705 0.53 +1.8
52,900 - HMPREF1058_RS12705 0.53 +0.5
52,964 - HMPREF1058_RS12705 0.65 -0.3
52,968 + HMPREF1058_RS12705 0.65 +1.5
52,975 + HMPREF1058_RS12705 0.66 +0.8
53,016 - HMPREF1058_RS12705 0.74 +0.5
53,077 + HMPREF1058_RS12705 0.85 +1.5
53,077 + HMPREF1058_RS12705 0.85 +2.5
53,079 + HMPREF1058_RS12705 0.85 +1.1
53,108 - +0.7
53,144 + -0.1
53,144 + +0.4
53,144 + +1.8
53,145 - +0.0
53,147 - +1.1
53,147 - +0.4
53,147 - +0.4
53,809 - -1.6
53,877 - -2.9
53,920 + -0.3
53,921 - -1.7
54,066 - HMPREF1058_RS12695 0.13 -1.7
54,069 + HMPREF1058_RS12695 0.13 -0.8

Or see this region's nucleotide sequence